View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4438_low_5 (Length: 397)
Name: NF4438_low_5
Description: NF4438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4438_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 22 - 382
Target Start/End: Original strand, 20344185 - 20344545
Alignment:
| Q |
22 |
ttatgttcttcataatctaaaaggttgaacaaaggtgcgttatattttaggaatgttgtgggcagctaggttatccttcaatagttaacttaggaccttt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20344185 |
ttatgttcttcataatctaaaaggttgaacaaaggtgcgttatattttaggaatgttgtgggcagctaggttctccttcaatagttaacttaggaccttt |
20344284 |
T |
|
| Q |
122 |
caagttattatcccttattgcttcttgattagtcgccatgtttggagcagctgaagatgtagatgcatacattctcttctttatgtttttcttgcaagtt |
221 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20344285 |
cgagttattatcccttattgcttcttgattagtcgccatgtttggagcagctgaagatgtagatgcatacattctcttctttatgtttttcttgcaagtt |
20344384 |
T |
|
| Q |
222 |
gccaaaattatctaatggaaaaagagaaagttttagtaagtgtgtaacaatggatattaaaacaattcaacacaatgacgttaaagatttgtattttatt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20344385 |
gccaaaattatctaatggaaaaagagaaagttttagtaagtgtgtaacaatggatattaaaacaattcaacacaatgacgttaaagatttgtattttatt |
20344484 |
T |
|
| Q |
322 |
cactactgttagtttagtcgtgataaatattggttgggatttaaaacagaaggtagtttct |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20344485 |
cactactgttagtttagtcgtgataaatattggttgggatttaaaacagaaggtagtttct |
20344545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 293
Target Start/End: Original strand, 18200990 - 18201066
Alignment:
| Q |
217 |
aagttgccaaaattatctaatggaaaaagagaaagttttagtaagtgtgtaacaatggatattaaaacaattcaaca |
293 |
Q |
| |
|
||||| |||||| |||| ||||||||||||||| ||| ||||||||||| ||||||| ||| ||| |||| ||||| |
|
|
| T |
18200990 |
aagttcccaaaacaatctgatggaaaaagagaaactttgagtaagtgtgtgacaatggctatcaaatcaatgcaaca |
18201066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University