View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4438_low_6 (Length: 391)

Name: NF4438_low_6
Description: NF4438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4438_low_6
NF4438_low_6
[»] chr6 (11 HSPs)
chr6 (294-362)||(26890870-26890938)
chr6 (269-354)||(26641231-26641316)
chr6 (269-354)||(26747197-26747282)
chr6 (311-362)||(27651844-27651895)
chr6 (305-362)||(27713769-27713826)
chr6 (240-319)||(26966479-26966559)
chr6 (242-324)||(26631875-26631958)
chr6 (242-324)||(26737850-26737933)
chr6 (240-278)||(26651403-26651441)
chr6 (240-278)||(26757371-26757409)
chr6 (245-303)||(26854111-26854169)
[»] chr4 (3 HSPs)
chr4 (285-358)||(18682696-18682769)
chr4 (298-342)||(18692037-18692081)
chr4 (326-358)||(18650319-18650351)
[»] scaffold0349 (1 HSPs)
scaffold0349 (305-362)||(18118-18175)
[»] chr8 (1 HSPs)
chr8 (305-362)||(29269635-29269692)


Alignment Details
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 294 - 362
Target Start/End: Complemental strand, 26890938 - 26890870
Alignment:
Q  294 agagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtattcttaaaagcaaatta 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26890938 agagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaatta 26890870  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 354
Target Start/End: Complemental strand, 26641316 - 26641231
Alignment:
Q  269 gaaatggaagctctcgtcattgaacagagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtattcttaaaa 354  Q
    |||||||||| || | ||||||||| |||||||||||||||||||||||| ||||||| |||||| |||| ||||||||| |||||    
T  26641316 gaaatggaagttcacatcattgaactgagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaa 26641231  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 354
Target Start/End: Complemental strand, 26747282 - 26747197
Alignment:
Q  269 gaaatggaagctctcgtcattgaacagagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtattcttaaaa 354  Q
    |||||||||| || | ||||||||| |||||||||||||||||||||||| ||||||| |||||| |||| ||||||||| |||||    
T  26747282 gaaatggaagttcacatcattgaactgagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaa 26747197  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 27651844 - 27651895
Alignment:
Q  311 atctgtcagtatcacaatatgtacaaactcttgtattcttaaaagcaaatta 362  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  27651844 atctgtcagtatcgcaatatgtacaaactcttgtattcgtaaaagcaaatta 27651895  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 305 - 362
Target Start/End: Original strand, 27713769 - 27713826
Alignment:
Q  305 tgaaccatctgtcagtatcacaatatgtacaaactcttgtattcttaaaagcaaatta 362  Q
    |||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  27713769 tgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaatta 27713826  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 26966559 - 26966479
Alignment:
Q  240 tgtaattaataatcaaacacttcattggagaaatggaagctctcgtcattgaacagaga-ttgtgatgaaccatctgtcag 319  Q
    |||||||||||||||||||||  ||| |||||||||||| || | ||||| || ||||| ||| ||||| |||||||||||    
T  26966559 tgtaattaataatcaaacactatatttgagaaatggaagttcacatcattaaatagagatttgagatgagccatctgtcag 26966479  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 26631958 - 26631875
Alignment:
Q  242 taattaataatcaaacacttcattggagaaatggaagctctcgtcattgaacagaga-ttgtgatgaaccatctgtcagtatca 324  Q
    |||||||||||||||||||| ||| |||||||||||| |  | |||||||| ||||| |||  || ||||||||||||| ||||    
T  26631958 taattaataatcaaacactttatttgagaaatggaagttaacatcattgaatagagatttgacattaaccatctgtcagaatca 26631875  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 26737933 - 26737850
Alignment:
Q  242 taattaataatcaaacacttcattggagaaatggaagctctcgtcattgaacagaga-ttgtgatgaaccatctgtcagtatca 324  Q
    |||||||||||||||||||| ||| |||||||||||| |  | |||||||| ||||| |||  || ||||||||||||| ||||    
T  26737933 taattaataatcaaacactttatttgagaaatggaagttaacatcattgaatagagatttgacattaaccatctgtcagaatca 26737850  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 278
Target Start/End: Complemental strand, 26651441 - 26651403
Alignment:
Q  240 tgtaattaataatcaaacacttcattggagaaatggaag 278  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  26651441 tgtaattaataatcaaacactttatttgagaaatggaag 26651403  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 278
Target Start/End: Complemental strand, 26757409 - 26757371
Alignment:
Q  240 tgtaattaataatcaaacacttcattggagaaatggaag 278  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  26757409 tgtaattaataatcaaacactttatttgagaaatggaag 26757371  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 26854169 - 26854111
Alignment:
Q  245 ttaataatcaaacacttcattggagaaatggaagctctcgtcattgaacagagattgtg 303  Q
    |||||||| || ||||| ||| |||||||||||  || |||||||||||||||||||||    
T  26854169 ttaataattaatcactttatttgagaaatggaatatcacgtcattgaacagagattgtg 26854111  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 358
Target Start/End: Original strand, 18682696 - 18682769
Alignment:
Q  285 tcattgaacagagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtattcttaaaagcaa 358  Q
    |||||| ||||||||||||| ||||||||| || |||| | |||||||||| ||||||||||||||||||||||    
T  18682696 tcattgtacagagattgtgacgaaccatctatcggtatgaaaatatgtacatactcttgtattcttaaaagcaa 18682769  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 18692037 - 18692081
Alignment:
Q  298 attgtgatgaaccatctgtcagtatcacaatatgtacaaactctt 342  Q
    |||||||||||||||||||| |||| | |||||||||||||||||    
T  18692037 attgtgatgaaccatctgtcggtatgaaaatatgtacaaactctt 18692081  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 358
Target Start/End: Original strand, 18650319 - 18650351
Alignment:
Q  326 aatatgtacaaactcttgtattcttaaaagcaa 358  Q
    |||||||||| ||||||||||||||||||||||    
T  18650319 aatatgtacatactcttgtattcttaaaagcaa 18650351  T

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Target: scaffold0349 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 18175 - 18118
Alignment:
Q  305 tgaaccatctgtcagtatcacaatatgtacaaactcttgtattcttaaaagcaaatta 362  Q
    |||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  18175 tgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaatta 18118  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 362
Target Start/End: Original strand, 29269635 - 29269692
Alignment:
Q  305 tgaaccatctgtcagtatcacaatatgtacaaactcttgtattcttaaaagcaaatta 362  Q
    |||| |||| ||| |||||||||||| |||| ||||||||||| ||||||||||||||    
T  29269635 tgaaacatcagtcggtatcacaatatctacatactcttgtattattaaaagcaaatta 29269692  T

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