View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4438_low_9 (Length: 368)
Name: NF4438_low_9
Description: NF4438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4438_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 33583048 - 33582896
Alignment:
| Q |
1 |
aattacaattgtgatcatagcttatgtatgaatcttttagagaataatcagatgaagaatgaataaaacaagaaataaaactatgtatacctgtctgaga |
100 |
Q |
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| T |
33583048 |
aattacaattgtgatcatagcttatatatcaatcttttagagaataatcagatgaagaatgaataaaacaagaaataaaactatgtatacctgtctgaga |
33582949 |
T |
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| Q |
101 |
agcatca----ataggtgaatgacctaaagaagagacggtgcttatatgatta |
149 |
Q |
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| T |
33582948 |
agcatcaatatataggtgaatgacctaaagaagagacggtgcttatatgatta |
33582896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 25122913 - 25122857
Alignment:
| Q |
67 |
aacaagaaataaaactatgtatacctgtctgagaagcatcaataggtgaatgaccta |
123 |
Q |
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|||||||||||| ||||| ||||||| |||||||||||||| ||||||||||||||| |
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| T |
25122913 |
aacaagaaataacactatatatacctatctgagaagcatcactaggtgaatgaccta |
25122857 |
T |
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