View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4439-Insertion-10 (Length: 159)
Name: NF4439-Insertion-10
Description: NF4439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4439-Insertion-10 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 140; Significance: 1e-73; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 1e-73
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 1095079 - 1094928
Alignment:
| Q |
8 |
gaacaccaccactatctgtactcaacattagtttttccaacaagatgaatctagattataccctataaaaaaccccatccaccccatatttacttgataa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1095079 |
gaacaccaccactatctgtactcaacattagtttttccaccaagatgaatctagattacaccctataaaaaaccccatccaccccatatttacttgttaa |
1094980 |
T |
|
| Q |
108 |
aaatttaaaccataaactccattcacacccctcattctcctacatcacttct |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1094979 |
aaatttaaaccataaactccattcacacccctcattctcctacatcacttct |
1094928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 1116509 - 1116361
Alignment:
| Q |
12 |
accaccactatctgtactcaacattagtttttccaacaagatgaatctagattataccctataaaaaacccca-tccaccccatatttacttgataaaaa |
110 |
Q |
| |
|
|||||||| |||| |||||||| |||||||| ||| |||||||||||||||||| ||| | | |||||||||| | ||| ||||||||||||||| |||| |
|
|
| T |
1116509 |
accaccaccatctttactcaacgttagttttcccaccaagatgaatctagattacaccttgtgaaaaaccccatttcactccatatttacttgattaaaa |
1116410 |
T |
|
| Q |
111 |
tttaaaccataaactccattcacacccctcattctcctacatcacttct |
159 |
Q |
| |
|
|||||||||| ||||| ||||||| | ||||||| || ||| ||||||| |
|
|
| T |
1116409 |
tttaaaccattaactctattcacatcgctcattcaccaacaccacttct |
1116361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 1098087 - 1097963
Alignment:
| Q |
12 |
accaccactatctgtactcaacattagtttttccaac-aagatgaatctagattataccctataaaaaaccccat---ccaccccatatttacttgataa |
107 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||| || ||||| ||||||||||| ||| |||||||||||| ||||||||||||||||| |||| |
|
|
| T |
1098087 |
accaccaccatctttactcaacattagtttttcccaccaagataaatctagattacaccaagcaaaaaaccccattatccaccccatatttacttcataa |
1097988 |
T |
|
| Q |
108 |
aaatttaaaccataaactccattca |
132 |
Q |
| |
|
||||||||| ||||||| ||||| |
|
|
| T |
1097987 |
gtatttaaaccgtaaactctattca |
1097963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University