View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4439-Insertion-2 (Length: 961)

Name: NF4439-Insertion-2
Description: NF4439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4439-Insertion-2
NF4439-Insertion-2
[»] chr1 (1 HSPs)
chr1 (8-282)||(24284186-24284459)
[»] chr8 (2 HSPs)
chr8 (398-531)||(37193273-37193406)
chr8 (398-531)||(37182143-37182274)
[»] chr3 (2 HSPs)
chr3 (398-532)||(21105366-21105500)
chr3 (398-464)||(42036775-42036841)
[»] scaffold0495 (1 HSPs)
scaffold0495 (400-527)||(10718-10845)
[»] chr6 (1 HSPs)
chr6 (400-527)||(10233990-10234117)
[»] chr7 (3 HSPs)
chr7 (767-857)||(25451079-25451169)
chr7 (672-733)||(25605781-25605842)
chr7 (672-733)||(25625422-25625483)
[»] chr5 (1 HSPs)
chr5 (672-733)||(20436001-20436062)
[»] chr4 (1 HSPs)
chr4 (672-733)||(5332143-5332204)
[»] chr2 (1 HSPs)
chr2 (310-344)||(17854474-17854508)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 6e-49; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 8 - 282
Target Start/End: Complemental strand, 24284459 - 24284186
Alignment:
Q  8 catattacactcaaactatcgcagtacaatgaagcctgatcgtgatgtagacccaagtcacttgccaatcctttcaactagatt-ccttccttagcaact 106  Q
    |||||| |||||||||| ||| |||||||| |||| ||||| ||||||||||  ||||||||  |||||||||||||| ||||| || ||||||||| ||    
T  24284459 catattgcactcaaactgtcgtagtacaataaagcatgatcttgatgtagacaaaagtcactgaccaatcctttcaaccagatttccctccttagcagct 24284360  T
Q  107 tctgtcaatgccatataatttgcctttgtagtagacaaagtcattgtaggctacaaagtagccttccaactcactgacaggacaatcaagagtgaacaga 206  Q
    |||||||  |||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||  || | |||||||||||| |    
T  24284359 tctgtcatagccatatactatgcctttgtagtagacaaagtcaatgtaggctacaaagtagccttccaactcac-aacaaaaccaccaagagtgaacaca 24284261  T
Q  207 taaccggtcatttgatcttttattgttcacatctccaacataatcagagtctgaataaccagatactagacactga 282  Q
    ||| |||||| | ||| || |||||| || ||||  |  ||||||| ||| ||| |||||| ||||||||||||||    
T  24284260 taatcggtca-tcgatattctattgtccatatctttagtataatcaaagtttgagtaaccatatactagacactga 24284186  T

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Target: chr8 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 398 - 531
Target Start/End: Complemental strand, 37193406 - 37193273
Alignment:
Q  398 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt 497  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |  |||||||||||||| ||||||  |||    
T  37193406 gtttgtttgtgcggtgagtgatcgctactgcacgttcaaagccaatctcaccgcggttttgagaagctagttggtgtagctttttgcccactgtgatttt 37193307  T
Q  498 tcaccatggttttgtgagtttccaaacacaggct 531  Q
    ||||| ||||||  ||||||||||||||||||||    
T  37193306 tcaccgtggtttcatgagtttccaaacacaggct 37193273  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 398 - 531
Target Start/End: Complemental strand, 37182274 - 37182143
Alignment:
Q  398 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt 497  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |  |||||||||||||| ||  ||  |||    
T  37182274 gtttgtttgtgcggtgagtgatcgctactgcacgttcaaagccaatctcaccgcggttttgagaagctagttggtgtagctttttgcccac--tgatttt 37182177  T
Q  498 tcaccatggttttgtgagtttccaaacacaggct 531  Q
    ||||| || |||  ||||||||||||||||||||    
T  37182176 tcaccgtgttttcatgagtttccaaacacaggct 37182143  T

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Target: chr3 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 398 - 532
Target Start/End: Complemental strand, 21105500 - 21105366
Alignment:
Q  398 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt 497  Q
    |||||||||||| |||||||||||||| |||| ||| |||| ||||||||||||||| || ||||||||| |  |||||||||  ||| || ||||||||    
T  21105500 gtttgtttgtgccgtgagtgaccgctactgcatgtttaaagtcaatctcaccgtggtatttagaagctagttggtgtagctttacgccaaccgtgccttt 21105401  T
Q  498 tcaccatggttttgtgagtttccaaacacaggcta 532  Q
    ||||||||||||||| ||||| |||||||| ||||    
T  21105400 tcaccatggttttgttagttttcaaacacatgcta 21105366  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 398 - 464
Target Start/End: Complemental strand, 42036841 - 42036775
Alignment:
Q  398 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagc 464  Q
    |||| |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||    
T  42036841 gtttatttgtgcggtgagtgaccgctaatgcacattcaaagtcaatatcaccgtggttttgagaagc 42036775  T

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Target: scaffold0495 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 400 - 527
Target Start/End: Original strand, 10718 - 10845
Alignment:
Q  400 ttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttttc 499  Q
    |||||||| ||||||||||||||||   |||||||||||||||||| | ||||||||||||||||||| |  || |||||||||| ||   ||  |||||    
T  10718 ttgtttgtacggtgagtgaccgctaccacacgttcaaagccaatctaaacgtggttttgagaagctagttgttgcagctttttgcataacatgtattttc 10817  T
Q  500 accatggttttgtgagtttccaaacaca 527  Q
    ||||||||||||||||||| ||||||||    
T  10818 accatggttttgtgagttttcaaacaca 10845  T

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Target: chr6 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 400 - 527
Target Start/End: Original strand, 10233990 - 10234117
Alignment:
Q  400 ttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttttc 499  Q
    |||||||| ||||||||||||||||   |||||||||||||||||| | ||||||||||||||||||| |  || |||||||||| ||   ||  |||||    
T  10233990 ttgtttgtacggtgagtgaccgctaccacacgttcaaagccaatctaaacgtggttttgagaagctagttgttgcagctttttgcataacatgtattttc 10234089  T
Q  500 accatggttttgtgagtttccaaacaca 527  Q
    ||||||||||||||||||| ||||||||    
T  10234090 accatggttttgtgagttttcaaacaca 10234117  T

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Target: chr7 (Bit Score: 55; Significance: 4e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 767 - 857
Target Start/End: Original strand, 25451079 - 25451169
Alignment:
Q  767 aaagccaagtgattgcttgcactggcgatagacgctttcaggtttgtcttgccaagaatgaagcagcagactctaggatgaagttaggata 857  Q
    ||||||||||||||||||||||    ||| | ||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||    
T  25451079 aaagccaagtgattgcttgcacctatgatgggcgctttcaggtttgtcttgccaagaataaagcagaagactctaggatgaagtcaggata 25451169  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 672 - 733
Target Start/End: Original strand, 25605781 - 25605842
Alignment:
Q  672 ttgttgacagatatgagtttcaattgcaatatggctcaattggatggtctgctgttgcaact 733  Q
    |||||| ||| |||||||||||| |||||||||| |||||||||||||||| || |||||||    
T  25605781 ttgttggcaggtatgagtttcaaatgcaatatggttcaattggatggtctgttggtgcaact 25605842  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 672 - 733
Target Start/End: Original strand, 25625422 - 25625483
Alignment:
Q  672 ttgttgacagatatgagtttcaattgcaatatggctcaattggatggtctgctgttgcaact 733  Q
    ||||||| || |||||||||||| |||||||||| |||||||||||||||| || |||||||    
T  25625422 ttgttgataggtatgagtttcaaatgcaatatggttcaattggatggtctgttggtgcaact 25625483  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 672 - 733
Target Start/End: Original strand, 20436001 - 20436062
Alignment:
Q  672 ttgttgacagatatgagtttcaattgcaatatggctcaattggatggtctgctgttgcaact 733  Q
    ||||| |||| |||||||| ||| |||||||||| |||||||||||||||| || |||||||    
T  20436001 ttgtttacagttatgagttccaaatgcaatatggttcaattggatggtctgttggtgcaact 20436062  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 672 - 733
Target Start/End: Original strand, 5332143 - 5332204
Alignment:
Q  672 ttgttgacagatatgagtttcaattgcaatatggctcaattggatggtctgctgttgcaact 733  Q
    ||||| |||| |||||||| ||| |||||||||| |||||||||||||||| || |||||||    
T  5332143 ttgtttacagttatgagttccaaatgcaatatggttcaattggatggtctgttggtgcaact 5332204  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 310 - 344
Target Start/End: Complemental strand, 17854508 - 17854474
Alignment:
Q  310 aattaaataatttagagcaactagtttaatctatt 344  Q
    |||||||||| ||||||||||||||||||||||||    
T  17854508 aattaaataaattagagcaactagtttaatctatt 17854474  T

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