View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4439-Insertion-4 (Length: 918)
Name: NF4439-Insertion-4
Description: NF4439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4439-Insertion-4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 14 - 501
Target Start/End: Complemental strand, 31938194 - 31937709
Alignment:
| Q |
14 |
ttatagaatttatcttgaatatctggttgaacttttattgaataaaatgattgataaattgtttgctctttctatcgtggggaagttcttgtttgtggca |
113 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31938194 |
ttatagaacttatcttgaatatctggttgaacttttattgaataaaatgattgataaattgtttgctctttctattgtggggaagttcttgtttgtggca |
31938095 |
T |
|
| Q |
114 |
tgtaatgagaggatagttgtcctattttggtcgttattcttcattggtgtatgttattttgggttttggtcatcctttatgccataaccatgtcttcttt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31938094 |
tgtaatgagaggatagttgtcctattttggtcgttattcttcattggtgcatgttattttgggttttggtcatcctttatgccataaccatgtcttcttt |
31937995 |
T |
|
| Q |
214 |
tattaatcgtactcatgtctatctaaaaacttgataaaggagagttaataaaggnnnnnnnnnnaacaacctaatcataattaatagatctaaagatact |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31937994 |
tattaatcgtactcatgtctatctaaaaacttgataaaggagagttaataaagg--ttttttttaacaacctaatcataattaatagatctaaagatact |
31937897 |
T |
|
| Q |
314 |
ttaggtatattgaaaatatcaatgtcgaccacaaccaaacaatccaataaagaaataagataagggaagaggagcaaacacatagattttggttattttg |
413 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| |
|
|
| T |
31937896 |
ttaggtatattgaaaatatcaatgtcaaccacaaccaaacaatccaataaagaaataagataagagaagaggagcaaacacgtagattttgattatttta |
31937797 |
T |
|
| Q |
414 |
ttcaacttaaaccgacttacgtctggtggagagaatcactctccaatccattattgatgaatttcttacgaaaggatacaaacgatta |
501 |
Q |
| |
|
||||||||||| |||||||||| || ||||| |||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
31937796 |
ttcaacttaaatcgacttacgtttgatggagcgaatcactctacaatccattattgatgagtttcttacgaagagatacaaacgatta |
31937709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 523 - 914
Target Start/End: Complemental strand, 31937678 - 31937284
Alignment:
| Q |
523 |
ccctaatttctatccactaatgcaagaagggattttcacatcgggtaaaatgagtttttacatcaagtatttga-----agttcagggatgtggtgtgtc |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
31937678 |
ccctaatttctatccactaatgcaagaagggattttcacatcgggtaaaatgagtttttacatcaagtatttgatttgaagttcggggatgtggtgtgtc |
31937579 |
T |
|
| Q |
618 |
cacccaattaaaataaaagcaaggcaaaacaaactaaacttgaggaacatgcacgaacgatgaacagccgctcgcccaagtccctgtcgacacataattt |
717 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31937578 |
cacccaattaaaataaaagcaaggcataacaaactaaacttgagaaacatgcacgaacgaggaacaaccgctcgcccaagtccctgtcgacacataattt |
31937479 |
T |
|
| Q |
718 |
gcttccccttcttaaaattcttgcaaatcagggtcacatatgttgcccttgccttagtcgtggatgccacatcactttnnnnnnnnnnnnnnnnnnnncc |
817 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| || |
|
|
| T |
31937478 |
gcttctccttcttaaaattcttgcaaatcagggtcacatatgttgcctttgtcttagtcgtggatgccacatcacttt---aaaaaaaattcaaaaaacc |
31937382 |
T |
|
| Q |
818 |
tacttcagtaccactaaaatacatgtggcagtgccacattacttaaaatgcacacatgtcactgctacgtcaacactattagagag-agttaatgggg |
914 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
31937381 |
tacttcaacaccactaaaatacatgtggcagtgccacattacttgaaatgcacacatgtcactgctacatcaacaccattagagagaagttaatgggg |
31937284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 646 - 776
Target Start/End: Complemental strand, 48393579 - 48393445
Alignment:
| Q |
646 |
acaaactaaacttgaggaacatg----cacgaacgatgaacagccgctcgcccaagtccctgtcgacacataatttgcttccccttcttaaaattcttgc |
741 |
Q |
| |
|
||||||||||| ||||||||||| || ||||| ||||| | |||| |||||||| | |||||| || |||||||||||||||| ||||||| | |
|
|
| T |
48393579 |
acaaactaaacctgaggaacatgatcacatgaacgtggaacaactgctccaccaagtcctggccgacacggaacttgcttccccttcttacaattcttac |
48393480 |
T |
|
| Q |
742 |
aaatcagggtcacatatgttgcccttgccttagtc |
776 |
Q |
| |
|
| |||| ||||||||||||||| ||||||||||| |
|
|
| T |
48393479 |
atatcaaggtcacatatgttgcttttgccttagtc |
48393445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University