View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4439-Insertion-5 (Length: 445)
Name: NF4439-Insertion-5
Description: NF4439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4439-Insertion-5 |
 | |
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| [»] chr4 (2 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 8 - 445
Target Start/End: Original strand, 47285450 - 47285887
Alignment:
| Q |
8 |
atattttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47285450 |
atattttgagtatcataactgaaagaaggagcatgcgactgatcaataaaagcaatgacagaaacaagagtagttgttccatcatcgagcttttgaatct |
47285549 |
T |
|
| Q |
108 |
ggagatctggtctctttcggatcctagacatgtatctcttttttctctcttcttcactttcagtcttgtagtgacttgatgcatgagcagcgaatttctg |
207 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47285550 |
ggagatatggtctctttcggatcctagacatgtatctcttttttctctcttcttcactttcagtcttgtagtgacttgatacatgagcagcgaatttctg |
47285649 |
T |
|
| Q |
208 |
tgatgttgctattactttgttgcactctggacacgtgtacggtccatgtttattgtgaggtagactgtggattctaccatcatcaagaatatcctctttt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
47285650 |
tgatgttgctattactttgttgcactctgaacacgtgtacggtccatgtttattgtgaggtagactgtggattctaccatcatcaataatatcctctttt |
47285749 |
T |
|
| Q |
308 |
ttcctcttcatgttggtacaatttgaagctcggacactattagtagcaacaatattgtttgcctcagatggagggtgttgtgaatttgatgacgagcctc |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47285750 |
ttcctcttcatgttggtacaatttgaagcctggacaccattagtagcaacaatattatttgcctcagatggagggtgttgtgaatttgatgacgagcctc |
47285849 |
T |
|
| Q |
408 |
caaggatactaggatgagcataagcagaagaagtattc |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47285850 |
caaggatactaggatgagcataagcagaagaagtattc |
47285887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 8 - 445
Target Start/End: Original strand, 47307010 - 47307450
Alignment:
| Q |
8 |
atattttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagctttt-gaatc |
106 |
Q |
| |
|
||||| ||| ||| |||||| | |||| |||||||||||| |||| |||||||||| ||||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
47307010 |
atattatgattattataacttacagaaacagcatgtgactggtcaacagaagcaatg---ggaacaaaagtagttgttccatcattgagcttttggaatc |
47307106 |
T |
|
| Q |
107 |
tggagatctggtctctttcggatcctagacatgtatctcttttttctctcttcttcactttcagtcttgtagtgacttgatgcatgagcagcgaatttct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||| ||||||||||| ||| ||||| | |
|
|
| T |
47307107 |
-ggagatctggtctctttcggatcctagacatgtatctcttttttttctcttcttcactttctgacttgtagtgtattgatgcatgactagcaaattttt |
47307205 |
T |
|
| Q |
207 |
gtgatgttgctattactttgttgcactctggacacgtgtacggtccatgtttattgtgaggtagactgtggattctaccatcatcaagaatatcctcttt |
306 |
Q |
| |
|
|||||||||||| ||||||||| |||| ||||||||| || ||||||| ||||||||| | |||||||||| ||||||||||||||| ||| || ||||| |
|
|
| T |
47307206 |
gtgatgttgctagtactttgttacactttggacacgtatatggtccatttttattgtgtgatagactgtgggttctaccatcatcaacaatttcttcttt |
47307305 |
T |
|
| Q |
307 |
tttcctcttcatgttggtacaatttgaagctcgga------cactattagtagcaacaatattgtttgcctcagatggagggtgttgtgaatttgatgac |
400 |
Q |
| |
|
||||||||||||||||||| ||| |||| |||| ||| ||||||||||||||||||||||| ||||||||| || |||||||||| ||| ||| |
|
|
| T |
47307306 |
tttcctcttcatgttggtattattaaaagcccggatttcatcaccattagtagcaacaatattgtttgtctcagatggtggttgttgtgaatgtgaagac |
47307405 |
T |
|
| Q |
401 |
gagcctccaaggatactaggatgagcataagcagaagaagtattc |
445 |
Q |
| |
|
||||||||||||| | | |||||||| |||| |||||||||||| |
|
|
| T |
47307406 |
gagcctccaaggagatcaagatgagcaaaagcggaagaagtattc |
47307450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 2589497 - 2589715
Alignment:
| Q |
8 |
atattttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatct |
107 |
Q |
| |
|
||||||||| |||||||| ||| ||| |||||| || ||||||| |||||||| || ||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
2589497 |
atattttgattatcataattgaccaaagtagcatgagattgatcaacagaagcaacaactggaacaaaagtagttgttccatcattgagcttttgaatcc |
2589596 |
T |
|
| Q |
108 |
ggagatctggtctctttcggatcctagacatgtatctcttttttctctcttcttcactttcagtcttgtagtgacttgatgcatgagcagcgaatttctg |
207 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||||||||| | |||||| |||||||||||||| ||||| |||||||||||| |
|
|
| T |
2589597 |
ggagatttggtctctttcggatcttagacatgtatctcttttttctctcttctagagtttcagacttgtagtgacttgtcacatgactagcgaatttctg |
2589696 |
T |
|
| Q |
208 |
tgatgttgctattactttg |
226 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
2589697 |
ggatgttgaaattactttg |
2589715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 264
Target Start/End: Complemental strand, 2589975 - 2589719
Alignment:
| Q |
8 |
atattttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatct |
107 |
Q |
| |
|
||||||||| |||||||| ||| ||||| |||||| |||||||||| |||| ||| || |||||| ||| ||||||||| ||| ||| |||||||| | |
|
|
| T |
2589975 |
atattttgattatcataattgacagaagcagcatgcgactgatcaacagaaacaacaactcgaacaaaagttgttgttccaacattgagtttttgaatat |
2589876 |
T |
|
| Q |
108 |
ggagatctggtctctttcggatcctagacatgtatctcttttttctctcttcttcactttcagtcttgtagtgacttgatgcatgagcagcgaatttctg |
207 |
Q |
| |
|
| |||| |||||||||| ||||||||||||||||||||||||| || || | || | |||||| ||||||||||||| || | | | ||||| || |
|
|
| T |
2589875 |
gaagatttggtctctttgggatcctagacatgtatctctttttcctttccttttgagtttcagaattgtagtgacttgccatatcactaccaaatttatg |
2589776 |
T |
|
| Q |
208 |
tgatgttgctattactttgttgcactctggacacgtgtacggtccatgtttattgtg |
264 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
2589775 |
ggatgttgaaattactttgttgcactttggacacgtgtacgatccatgtttattgtg |
2589719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 10300036 - 10299783
Alignment:
| Q |
8 |
atattttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatct |
107 |
Q |
| |
|
||||||||| |||||||| ||| ||||| |||||| ||||||||||||||| ||| || |||||| ||| ||||||||| ||| ||| ||| |||||| |
|
|
| T |
10300036 |
atattttgattatcataattgacagaagcagcatgcgactgatcaatagaaacaacaacttgaacaaaagttgttgttccaacattgagttttggaatct |
10299937 |
T |
|
| Q |
108 |
ggagatctggtctctttcggatcctagacatgtatctcttttttctctcttcttcactttcagtcttgtagtgacttgatgcatgagcagcgaatttctg |
207 |
Q |
| |
|
| |||| | ||||||| |||||||||||||||||||||||||||| | |||| | ||||| ||||||||| ||| ||||| ||| |||| || |
|
|
| T |
10299936 |
gaagattttatctctttgggatcctagacatgtatctcttttttcttttctcttgagtttcataattgtagtgagttgccacatgactagcaaattaatg |
10299837 |
T |
|
| Q |
208 |
tgatgttgctattactttgttgcactctggacacgtgtacggtccatgtttatt |
261 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
10299836 |
ggatgttgaaattactttgttgcactttggacacgtgtacgatccatgtttatt |
10299783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 10299558 - 10299735
Alignment:
| Q |
8 |
atattttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatct |
107 |
Q |
| |
|
||||||||| |||||||| ||| ||| |||||| || ||||||| ||||| || || ||||||| ||||||||||| ||||| |||||||||||||| |
|
|
| T |
10299558 |
atattttgattatcataattgatcaaagtagcatgagaatgatcaacagaag-aacaaccggaacaaaagtagttgttctatcattgagcttttgaatct |
10299656 |
T |
|
| Q |
108 |
ggagatctggtctctttcggatcctagacatgtatctc-ttttttctctcttcttcactttcagtcttgtagtgacttg |
185 |
Q |
| |
|
|||||| |||||||||| |||| |||||||||||||| ||||||||||||||| | |||||| |||||||||||||| |
|
|
| T |
10299657 |
ggagatttggtctcttttagatcatagacatgtatctctttttttctctcttctagagtttcagacttgtagtgacttg |
10299735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 37 - 290
Target Start/End: Complemental strand, 38261211 - 38260955
Alignment:
| Q |
37 |
agcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatctggagatctggtctctttcggatcctagac |
136 |
Q |
| |
|
||||||||||| |||| | ||||||| |||||||||| ||||||||||||||||| ||||||||||||||| ||| || |||||||| |||||||| |
|
|
| T |
38261211 |
agcatgtgacttatcaccacaagcaataacaggaacaaaagtagttgttccatcattgagcttttgaatctgaagacgcggcctctttcgaatcctagaa |
38261112 |
T |
|
| Q |
137 |
atgtatctcttttttctctcttcttcactttcagtcttgtagtgacttgatg---catgagcagcgaatttctgtgatgttgctattactttgttgcact |
233 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||| |||||||||||| ||||| ||| ||||| ||||||||| | | || ||||||||| | |
|
|
| T |
38261111 |
atgtatctcttttttctgtcttcttcactttcgaacttgcagtgacttgatgaaacatgattagcaaatttttgtgatgtttcaaatattttgttgcatt |
38261012 |
T |
|
| Q |
234 |
ctggacacgtgtacggtccatgtttattgtgaggtagactgtggattctaccatcat |
290 |
Q |
| |
|
|| ||| | ||| ||||||| ||| ||||| ||||| ||||||||||| ||||||| |
|
|
| T |
38261011 |
ttgaacatgggtatggtccatatttcttgtgtggtaggctgtggattcttccatcat |
38260955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 37 - 291
Target Start/End: Complemental strand, 38244911 - 38244654
Alignment:
| Q |
37 |
agcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatctggagatctggtctctttcggatcctagac |
136 |
Q |
| |
|
||||||||||| |||| | |||||| |||||||||| ||||||| ||||||||| ||||||||||||||| ||| ||||||||||| |||||||| |
|
|
| T |
38244911 |
agcatgtgacttatcagcacaagcaacaacaggaacaaaagtagttcttccatcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaa |
38244812 |
T |
|
| Q |
137 |
atgtatctcttttttctctcttcttcactttcagtcttgtagtgacttgatg---catgagcagcgaatttctgtgatgttgctattactttgttgcact |
233 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||| ||||| ||||||||| | | || ||||||||| | |
|
|
| T |
38244811 |
ttgtatctcttttttctgtcttcttcactttcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgatgtttcaaatattttgttgcatt |
38244712 |
T |
|
| Q |
234 |
ctggacacgtgtacggtccatgtttattgtgaggtagactgtggattctaccatcatc |
291 |
Q |
| |
|
| ||| | ||| ||||||||||| | ||| ||||| ||||| ||| |||||||||| |
|
|
| T |
38244711 |
gggaacatgggtatggtccatgtttctcgtgtggtaggctgtgaattttaccatcatc |
38244654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 8 - 264
Target Start/End: Complemental strand, 22222709 - 22222452
Alignment:
| Q |
8 |
atattttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatct |
107 |
Q |
| |
|
||||||||| |||||||| ||| ||||| |||||| ||||||||| ||| ||| || | ||||| || ||||||||| ||| ||| |||||||||| |
|
|
| T |
22222709 |
atattttgattatcataattgatagaagcagcatgcaactgatcaacggaaacaacaactgaaacaaatgttgttgttccaacattgagtttttgaatct |
22222610 |
T |
|
| Q |
108 |
ggagatctggtctctttcggatcctagacatgtatctcttttttctctcttcttcactttcagtcttgtagtgacttgatgcatgagcagcgaatttctg |
207 |
Q |
| |
|
| |||| || ||||||| |||||||||||||||||||||||||||| ||||||| | ||||| ||||||||||||| ||||| ||| ||||| || |
|
|
| T |
22222609 |
gcagatttgttctctttgggatcctagacatgtatctcttttttctttcttcttgagtttcaaaattgtagtgacttgccacatgactagcaaatttttg |
22222510 |
T |
|
| Q |
208 |
tgatgttgctattac-tttgttgcactctggacacgtgtacggtccatgtttattgtg |
264 |
Q |
| |
|
||||||| ||||| ||||||||||| || ||||||||| | ||||||||||||||| |
|
|
| T |
22222509 |
ggatgttgaaattacttttgttgcactttgcacacgtgtatgatccatgtttattgtg |
22222452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 22222228 - 22222406
Alignment:
| Q |
8 |
atattttgagtatcataactgaaagaaggagcatgtgactgatcaatagaagcaatgacaggaacaagagtagttgttccatcatcgagcttttgaatct |
107 |
Q |
| |
|
||||||||| |||||||| ||| | ||| |||||| || || ||||||||||||| || |||||| ||||||||||||||||| || ||| |||||| |
|
|
| T |
22222228 |
atattttgattatcataattgacaaaagcagcatgagattggtcaatagaagcaacaactcgaacaaaagtagttgttccatcattgatcttatgaatcc |
22222327 |
T |
|
| Q |
108 |
ggagatctggtc--tctttcggatcctagacatgtatctcttttttctctcttcttcactttcagtcttgtagtgactt |
184 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||| |||||||| | |||||| |||||||||||| |
|
|
| T |
22222328 |
ggagatttggtcactctttcggatcctagacatgtatctcttttttttctcttctagagtttcagatttgtagtgactt |
22222406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 383 - 445
Target Start/End: Original strand, 23109013 - 23109075
Alignment:
| Q |
383 |
tgttgtgaatttgatgacgagcctccaaggatactaggatgagcataagcagaagaagtattc |
445 |
Q |
| |
|
|||||||||| |||||| |||||||| |||| || ||||||| |||||||||||||||||||| |
|
|
| T |
23109013 |
tgttgtgaatgtgatgatgagcctcctaggagaccaggatgatcataagcagaagaagtattc |
23109075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 23108700 - 23108612
Alignment:
| Q |
199 |
gaatttctgtgatgttgctattactttgttgcactctggacacgtgtacggtccatgtttattgtgaggtagactgtggattctaccat |
287 |
Q |
| |
|
|||||| || |||||| || ||||||||||| || || ||| |||| |||||||||| |||||| |||||||| ||||||| ||||| |
|
|
| T |
23108700 |
gaatttttgagatgttaataatactttgttgctctttgaacatatgtatggtccatgttaattgtgtggtagactatggattccaccat |
23108612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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