View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4439-Insertion-7 (Length: 305)
Name: NF4439-Insertion-7
Description: NF4439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4439-Insertion-7 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 23110802 - 23111099
Alignment:
| Q |
8 |
tctttgtccaaattggtatactggcaatgataaatcaatgatcctagccaactgtcttttccgttctggaggttgcgcggttcttttgacaaacaaaaga |
107 |
Q |
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| T |
23110802 |
tctttgtccaaattggtatactggcaatgataaatcaatgatcctagccaactgtcttttccgttctggaggttgcgcggttcttttgacaaacaaaaga |
23110901 |
T |
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| Q |
108 |
tccttaaagaacagaagtatattgaaattgaagtgtttagtacgaacgcaccacggcgccagagatgactcttacacttgctgcactcaaaaggaagatg |
207 |
Q |
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| T |
23110902 |
tccttaaagaacagaagtatattgaaattgaagtgtttagtacgaacgcaccacggcgccagagatgactcttacacttgctgcactcaaaaggaagatg |
23111001 |
T |
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| Q |
208 |
agcagggtaggcttggtattcacttagggaaaactcttccaaaagcagcaacaagagcttttgttgataatttaagggtaatttcacccaaaattttg |
305 |
Q |
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| T |
23111002 |
agcagggtaggcttggtattcacttagggaaaactcttccaaaagcagcaacaagagcttttgttgataatttaagggtaatttcacccaaaattttg |
23111099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 23073559 - 23073262
Alignment:
| Q |
8 |
tctttgtccaaattggtatactggcaatgataaatcaatgatcctagccaactgtcttttccgttctggaggttgcgcggttcttttgacaaacaaaaga |
107 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||| || ||||||||||||| |||||| |
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| T |
23073559 |
tcttagtccaaattggtatactggcaatgatagatcaatgatcctagccaactgtcttttccgttccggcggttgctcgattcttttgacaaataaaaga |
23073460 |
T |
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| Q |
108 |
tccttaaagaacagaagtatattgaaattgaagtgtttagtacgaacgcaccacggcgccagagatgactcttacacttgctgcactcaaaaggaagatg |
207 |
Q |
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| T |
23073459 |
tccttaaaaaacagaagcatactgaaattgaagtgtttagtacgaacgcaccacggcgcaagagaagactcttacaattgttgcattcaaaaggaagatg |
23073360 |
T |
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| Q |
208 |
agcagggtaggcttggtattcacttagggaaaactcttccaaaagcagcaacaagagcttttgttgataatttaagggtaatttcacccaaaattttg |
305 |
Q |
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| T |
23073359 |
agcagggtaggcttggttttcatttagggaaaactctcccaaaagcagcaacaaaagtttttgttgacaatttaagggtaatttcacctaaaattttg |
23073262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 23078167 - 23077870
Alignment:
| Q |
8 |
tctttgtccaaattggtatactggcaatgataaatcaatgatcctagccaactgtcttttccgttctggaggttgcgcggttcttttgacaaacaaaaga |
107 |
Q |
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| T |
23078167 |
tcttagtccaaattggtatcctggtagtaatagatcaatgatcttagccaattgtctttttcgcaccggcggttgtgccattcttttgacaaacaaaaga |
23078068 |
T |
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| Q |
108 |
tccttaaagaacagaagtatattgaaattgaagtgtttagtacgaacgcaccacggcgccagagatgactcttacacttgctgcactcaaaaggaagatg |
207 |
Q |
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| T |
23078067 |
tccttaaagaacaaaagtatattgaaattgaagtgtttagtaaggacgcaccacggcgccagagatgactcgtataactgttgccttaaaaaggaagacg |
23077968 |
T |
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| Q |
208 |
agcagggtaggcttggtattcacttagggaaaactcttccaaaagcagcaacaagagcttttgttgataatttaagggtaatttcacccaaaattttg |
305 |
Q |
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| T |
23077967 |
agcgcggtgcagttggtttttatttatcgaaaactctcccgttggtagcaacaagagcttttgttgagaatttaagggtaatttcacccaaaattttg |
23077870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 304
Target Start/End: Complemental strand, 41080619 - 41080357
Alignment:
| Q |
42 |
tcaatgatcctagccaactgtcttttccgttctggaggttgcgcggttcttttgacaaacaaaagatccttaaagaacagaagtatattgaaattgaagt |
141 |
Q |
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|||||||| || || || |||||||||||| | || ||||| || ||||| | ||||| |||||||||||||| ||| | |||| |||| ||||||| |
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| T |
41080619 |
tcaatgattcttgcaaattgtcttttccgtaccggcggttgtgcaattcttctcacaaataaaagatccttaaaacacaaagctatactgaagttgaagt |
41080520 |
T |
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| Q |
142 |
gtttagtacgaacgcaccacggcgccagagatgactcttacacttgctgcactcaaaaggaagatgagcagggtaggcttggtattcacttagggaaaac |
241 |
Q |
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| T |
41080519 |
gtttagttagaactcatcatggtgctagggatgatgctcataactgttgtagtcaaaaagaagatgaacaaggtaaacttggtttttacctagctaaaga |
41080420 |
T |
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| Q |
242 |
tcttccaaaagcagcaacaagagcttttgttgataatttaagggtaatttcacccaaaatttt |
304 |
Q |
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| T |
41080419 |
tcttccaaaagcagctacaagagcttttacagataatttaagggtgttatcacctaaaatttt |
41080357 |
T |
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