View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4439_high_4 (Length: 237)
Name: NF4439_high_4
Description: NF4439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4439_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 38120220 - 38120001
Alignment:
| Q |
2 |
tgtactttaataatgagatacaatataatttttctctctgaagttacttaaataggattgtttgaccagtggtaacactttttaggcaaattgatttgtt |
101 |
Q |
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| T |
38120220 |
tgtactttaataatgagatacaatataatttttctctctgaagttacttaaataggattgcttgaccagtggtaacactttttaggcaaattcacttgtt |
38120121 |
T |
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| Q |
102 |
cattgtaacccagatctcaacttttgaagaacgaagaagaagaacgcgattgattggagttcgttttgattttgatgaattagtcttgatttgtaccaaa |
201 |
Q |
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| T |
38120120 |
cattgtaacccagatctcaatttttgaagaacgaagaagaagaacgcgattgattggagttcgttttgattttgatgaattagtcttgatttgtaccaaa |
38120021 |
T |
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| Q |
202 |
aatgttcatgaattcgtttt |
221 |
Q |
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| T |
38120020 |
aacgttcatgaatttgtttt |
38120001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 2377270 - 2377200
Alignment:
| Q |
151 |
ttgattggagttcgttttgattttgatgaattagtcttgatttgtaccaaaaatgttcatgaattcgtttt |
221 |
Q |
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| T |
2377270 |
ttgattggagttcgttttaattttgatgaattaattttgatttgtaccaaaaactttaatgaattcgtttt |
2377200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 97 - 221
Target Start/End: Complemental strand, 1560465 - 1560341
Alignment:
| Q |
97 |
ttgttcattgtaacccagatctcaacttttgaagaacgaagaagaagaacgcgattgattggagttcgttttgattttgatgaattagtcttgatttgta |
196 |
Q |
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| T |
1560465 |
ttgttctttgtaacccatatctcaacttttgaagaacgaagaagaagaatccgattgattggagttcgttttgattttgatgaattagttttgatttgta |
1560366 |
T |
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| Q |
197 |
ccaaaaatgttcatgaattcgtttt |
221 |
Q |
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| T |
1560365 |
ccaaaaacgttcatgaattcgtttt |
1560341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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