View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4439_low_1 (Length: 442)
Name: NF4439_low_1
Description: NF4439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4439_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 38120208 - 38120638
Alignment:
| Q |
1 |
ttattaaagtacatagctcattattcaagttcggtatctagccaacttgaattaatcagttagaaggatttcttcctcctattaaatacctttcaaaatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
38120208 |
ttattaaagtacatagctcattattcaagttcggtatttagccaacttgaattaatcagttagaaggattccttcctcccattaaatacctttcaaaatg |
38120307 |
T |
|
| Q |
101 |
tactgatcattaatgtttgcataatcaaacgaatatttagaaggattcattgcacatttatttcacttcagtaaataaattcaaatggactcgttcaatt |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38120308 |
tactgatcattaacctttgcataatcaaacgaatatttagaaggattcattgcacatttatttcacttcagtaaataaattcaaatggactcgttcaatt |
38120407 |
T |
|
| Q |
201 |
tgacttgttactaaatcatttaacccaaaaattatctctggacttcaaatatcactctagcaacttggaagacaacaagaacgcg-taagcagaaaacat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||| || |
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| T |
38120408 |
tgacttgttactaaatcatttaacccaaaaattatctctggaccctaaatatcactctagcaacttggaagacaacaagaacgtgctaagcagaaaatat |
38120507 |
T |
|
| Q |
300 |
gaattgataaacaagataatgtcaagaaaatctgtaaagactaaatccacaaattgttttattgaagaactatttaagcaacatagtgtagttagataat |
399 |
Q |
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| T |
38120508 |
gaattgataaacaagataatgtcaagaaaatctgtaaagactaaatccacaaattgttttattgaagaactatttaagcaacatagtgtagttggataat |
38120607 |
T |
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| Q |
400 |
agtgtgaattaactacaaattcaaagtttca |
430 |
Q |
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| T |
38120608 |
agtgtgaattaactacaaattcaaagtttca |
38120638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 430
Target Start/End: Complemental strand, 38609533 - 38609505
Alignment:
| Q |
402 |
tgtgaattaactacaaattcaaagtttca |
430 |
Q |
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| T |
38609533 |
tgtgaattaactacaaattcaaagtttca |
38609505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 430
Target Start/End: Complemental strand, 38794316 - 38794288
Alignment:
| Q |
402 |
tgtgaattaactacaaattcaaagtttca |
430 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
38794316 |
tgtgaattaactacaaattcaaagtttca |
38794288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 310 - 430
Target Start/End: Original strand, 28730100 - 28730215
Alignment:
| Q |
310 |
acaagataatgtcaagaaaatctgtaaagactaaatccacaaattgttttattgaagaactatttaagcaacatagtgtagtta--gataatagtgtgaa |
407 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||||| | |||||| ||||||||||||| ||| || |||||||||||||| |
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| T |
28730100 |
acaagataatctcaagaaaatctgtaaagactaaatccaca-------ttattaacgaactagttaagcaacatagagtatatatggataatagtgtgaa |
28730192 |
T |
|
| Q |
408 |
ttaactacaaattcaaagtttca |
430 |
Q |
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||||||||||||||| ||||||| |
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|
| T |
28730193 |
ttaactacaaattcagagtttca |
28730215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 385
Target Start/End: Complemental strand, 33078768 - 33078696
Alignment:
| Q |
311 |
caagataatgtcaagaaaatctgtaaagactaaatccacaaattgttttattgaagaactatttaagcaacatag |
385 |
Q |
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||||||||| ||||||||| |||||||||||||||| ||||| | |||||| |||||||| | ||||||||||| |
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| T |
33078768 |
caagataatctcaagaaaa-ctgtaaagactaaatcaacaaa-cggtttattaaagaactaataaagcaacatag |
33078696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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