View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4439_low_2 (Length: 408)
Name: NF4439_low_2
Description: NF4439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4439_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 56189758 - 56190137
Alignment:
| Q |
1 |
agtttttcaaaactcaacaagtttgtatttgatccattaagggaggcaagaggccacaatgcagtaaatt----------aaggagagtcggggcttcct |
90 |
Q |
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| T |
56189758 |
agtttttcaaaacccaacaagtttgtatttgatccattaagggaggcaagaggccacaatgcagtaaactgggttggagtaaggagagtcggggcttcct |
56189857 |
T |
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| Q |
91 |
cctggagatcaacggtagacagggaagtctcgcttgatttggctttgggttttgattgagatgatgactccacaagaccaggtgcaagccgcttgagctt |
190 |
Q |
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| T |
56189858 |
cctggagatcaacggtagacagggaagtctcgcttgatttggctttgggttttgattgagacgataactccacaagagcaggtgcaagccgcttgagctt |
56189957 |
T |
|
| Q |
191 |
caacctgctatcggaagaggttgacgcagcagaggaaggggcttcaagcgaagtagggccaacaatgcggagtgagaaaagaggagcactctggccacga |
290 |
Q |
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| T |
56189958 |
caacctgttatcggaagaggttgacacagcagaggaaggggcttcaagcgaagtagggccaacaatgcggagtgagagaagaggagcactctggccacga |
56190057 |
T |
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| Q |
291 |
gaagcacaacggagatgctcagccaaggtgagaagcccagcagcaaaaccattctgcgttcggttcaagggcagaggtaa |
370 |
Q |
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| T |
56190058 |
gaagcacaacggagatgctcagccaaggtgagaagcccagcagcaaaaccattctgtgttcggttcaagggcagaggtaa |
56190137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 7 - 389
Target Start/End: Complemental strand, 2391495 - 2391112
Alignment:
| Q |
7 |
tcaaaactcaacaagtttgtatttgatccattaagggaggcaagaggccacaatgcagtaaatt----------aaggagagtcggggcttcctcctgga |
96 |
Q |
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||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||| ||||| | |||||| ||||||||||||||||||| |
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| T |
2391495 |
tcaaaacccaacaagtttgcatttgatccattaagagaggcaagaggccacaatgcggtaaactgggtaggagtaaggagggtcggggcttcctcctgga |
2391396 |
T |
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| Q |
97 |
gatcaacggtagacagggaagtctcgcttgatttggctttgggttttgattgagatgatgactccacaagaccaggtgcaagccgcttgagcttcaacct |
196 |
Q |
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| T |
2391395 |
gatcaacggtagacagggaagtgtcaactaatttggattt------tgattgagaggataactccacaagaccaggtgcaagacgcttaagcttcaacct |
2391302 |
T |
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| Q |
197 |
gctatcggaagaggttgacgcagcagaggaaggggcttcaagcgaagtagggccaacaatgcggagtgagaaaagaggagcactctggccacgagaagca |
296 |
Q |
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| T |
2391301 |
gttattagaagaagttgatgcag---aggaaggggcttcaagtgaggtaggaccaacaatccggagtgaaagaaggggagcatcttggccacgagaagca |
2391205 |
T |
|
| Q |
297 |
caacggagatgctcagccaaggtgagaagcccagcagcaaaaccattctgcgttcggttcaagggcagaggtaaattaaggggatggcgaaga |
389 |
Q |
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||||||||||||||||| ||||||||||| |||||||| ||||| || ||||||| || |||||||||||| |||| |||||||||||| |
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| T |
2391204 |
tggcggagatgctcagccaacgtgagaagcccggcagcaaagccattttggcttcggtttaacggcagaggtaaagtaagaggatggcgaaga |
2391112 |
T |
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