View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4440_high_4 (Length: 325)
Name: NF4440_high_4
Description: NF4440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4440_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 12551026 - 12550727
Alignment:
| Q |
19 |
caatccacctggcataagattcttgaaatttgtaacgcctcaacgagttcaatgaccttgaacggctgcaagagcacaccattaatgaagggtgtcatat |
118 |
Q |
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| T |
12551026 |
caatccacctggcataagattcttgaaatttgtaacgcctcaacgagttcaatgccctcgaacggctgcaagagcacaccattaatgaagggtgtcatat |
12550927 |
T |
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| Q |
119 |
gtaacgttcctccctttacgcatcaacagctcctttctaggattgtataaataatccttctcacaacaatgcaaggtacacaatttctcaactcgtaaac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12550926 |
gtaacgttcctccctttacgcatcaacagctcctttctaggattgtataaatactctttctcacaacaatgcaaggtacacaatttctcaactcgtaaac |
12550827 |
T |
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| Q |
219 |
ctcacactctttggtcacttactatcttagacgtcagagtgctccaatccagataactttctcgatctatccagatcaataatgactttctttcatatca |
318 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12550826 |
ctcacactctttggtcacttactatcttatacgtcagagtgctccaatccagataactttctcggtctatccagatcaataatgactttctttcatatca |
12550727 |
T |
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