View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4440_low_1 (Length: 468)
Name: NF4440_low_1
Description: NF4440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4440_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 47 - 458
Target Start/End: Complemental strand, 8007680 - 8007269
Alignment:
| Q |
47 |
atctcttcaaattaaagaaatgaagataatcatagacagagatgatcataactcgtttaatttgcagcttatattttaaaaaatata-------tatatt |
139 |
Q |
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| T |
8007680 |
atctcttcaaattaaagaaataaagagaatcatagacagagatgatcataactcgtttaatttgcagcttatattataaaaaaaaaaaaaatattatatt |
8007581 |
T |
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| Q |
140 |
tttatcgacagataaacacttatcatgttaactatttatgcatacactatatttataacaaaagacaaaaatatacttttgtcaacaaacnnnnnnnnnn |
239 |
Q |
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| T |
8007580 |
tttatcgacagataaacacttatcatgttaactatttatgcatacactatatttataacaaaagacaaaaatatacttttgtcaaaaaaaaaaaaa---- |
8007485 |
T |
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| Q |
240 |
gaaagataaaatatactataaatttgaattgtttttgtatatgtaaagttctaagctttatttataaatacagttatttaggggtggaaaactcctatat |
339 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8007484 |
-aaagataaaatacactataaaattgaattgtttttgtatatgtaaagttataagctttatttataaatacagttatttaggggtggaaaactc----gt |
8007390 |
T |
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| Q |
340 |
atagttgctcacaccttgaaaattagtgagaa--nnnnnnngtgtaaagcgacataagaaaatcattaggagtcaaaagaagctatatttattgcactgc |
437 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8007389 |
atagttgctcacaccttgaaaattagtgagaatttttttttgtgtaaagcgacataagaaaatcattaggagtcaaaagaagctatatttattgcactgc |
8007290 |
T |
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| Q |
438 |
aactaacatgtcatatctctg |
458 |
Q |
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| T |
8007289 |
aactaacatgtcatatctctg |
8007269 |
T |
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