View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4440_low_2 (Length: 412)
Name: NF4440_low_2
Description: NF4440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4440_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 20 - 399
Target Start/End: Complemental strand, 42635292 - 42634913
Alignment:
| Q |
20 |
gtaacttgggtaatcagagtagcctctaatgtagcttcttgggccatcacttcttgtaggagtaaaaggacttatgttgtaaccatcatcttttgaagtt |
119 |
Q |
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| T |
42635292 |
gtaacttgggtaatcagagtagcctctaatgtagcttcttgggccatcacttcttgtaggagtaaaaggacttctgttgtaaccatcatcttttgaagtt |
42635193 |
T |
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| Q |
120 |
gcagatgataaaagttgaggactattgtttgcggtgcaaaacgagttctcttcaacttcgttaagttttagtgggttgtaataagattgaacctcacaag |
219 |
Q |
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| T |
42635192 |
gcagatgataaaagttgaggactattgtttgcggtgcaaaacgagttctcttcaacttcgttaagttttagtgggttgtaataagattgaacctcacaag |
42635093 |
T |
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| Q |
220 |
atacactttgaccaaattgatgagattttgattcctttgtaggggtcaaattctgactataataataatcaggatcacttgtggagtgaaagatgtttct |
319 |
Q |
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| T |
42635092 |
atacactttgaccaaattgatgagattttgattcctttgtaggggtcaaattctgactataataataatcaggatcacttgtggagtgaaagatgtttct |
42634993 |
T |
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| Q |
320 |
gcgttttgtgttgatgtgttgttttcccgaatcaatttcgacaatcctatcacttttttcgtcactcctgctatatgttc |
399 |
Q |
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| T |
42634992 |
gcgttttgtgttgatgtgttgttttcccgaatcaatttcgacaatcctatcacttttttcgtcactcctgctatatgttc |
42634913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 44096903 - 44096969
Alignment:
| Q |
20 |
gtaacttgggtaatcagagtagcctctaatgtagcttcttgggccatcacttcttgtaggagtaaaa |
86 |
Q |
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|||||||||||||| |||| ||||||||| |||| |||||| ||||||||||||||| ||||||||| |
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| T |
44096903 |
gtaacttgggtaattagagcagcctctaacgtagtttcttgagccatcacttcttgttggagtaaaa |
44096969 |
T |
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