View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4440_low_5 (Length: 221)
Name: NF4440_low_5
Description: NF4440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4440_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 210
Target Start/End: Original strand, 41277782 - 41277970
Alignment:
| Q |
22 |
agattttgtattgaataattaatataagagcttaatggatatggtgtgaatccagccattgtgaaacatgatctccacttcttcagaacctcgtgacgtt |
121 |
Q |
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| T |
41277782 |
agattttgtattgaataattaatataagagcttaatggatatggtgtgaatccagccattgtgaaacatgatctccacttcttcagaacctcgtgacgtt |
41277881 |
T |
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| Q |
122 |
caactctttctgcgccttcacacgctactaaattgaccacttcacgagccaagcaatgctgttccacattaatcctttctctgtgctcc |
210 |
Q |
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| T |
41277882 |
caactctttctgcgccttcacacgctactaaattgaccacttcacgagccaagcaatgctgttccacattaatcctttctctgtgctcc |
41277970 |
T |
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Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 49 - 206
Target Start/End: Original strand, 22300314 - 22300471
Alignment:
| Q |
49 |
gagcttaatggatatggtgtgaatccagccattgtgaaacatgatctccacttcttcagaacctcgtgacgttcaactctttctgcgccttcacacgcta |
148 |
Q |
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| T |
22300314 |
gagctcaatggataaggcgtaaatccagccatcgtgaaacgcattctccacttactcagaagctcgtgacgttccactctttcttccccttcgcaagcta |
22300413 |
T |
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| Q |
149 |
ctaaattgaccacttcacgagccaagcaatgctgttccacattaatcctttctctgtg |
206 |
Q |
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| T |
22300414 |
ctaagttcacaacttcacgagccaaacaatgttgttcgacattaatcctctctttgtg |
22300471 |
T |
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