View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4441-Insertion-1 (Length: 1002)
Name: NF4441-Insertion-1
Description: NF4441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4441-Insertion-1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 649; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 268 - 1002
Target Start/End: Original strand, 8057729 - 8058463
Alignment:
| Q |
268 |
atgtcataataatctggtgttccaccgaaagataagtaaagtctgaccaaagattgtttcagttaagattcgaaatcaaagttttaagtttgatttgtga |
367 |
Q |
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| T |
8057729 |
atgtcataataatctggtgttccactgaaagataagtaaagtctgaccaaagattgtttcagttaagattcgaaatcaaagttttaagtttgatttgtga |
8057828 |
T |
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| Q |
368 |
acaaagatgaaatcactaagtagtgtaggactgggtttgagcattgtgtttggttgccttttattggctttagtagctgaagtttactatttgttatggt |
467 |
Q |
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| T |
8057829 |
acaaagatgaaatcactaagtagtgtaggacttggtttaagcattgtttttggttgccttttattggctttagtagctgaagtttactacttgttatggt |
8057928 |
T |
|
| Q |
468 |
ggaagaagaaaataatcaaaagagaaattgaaaatgactatggcaatggcaaccctttgaaagagcttttctatatgttttgttggaaaagaccatcaac |
567 |
Q |
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| T |
8057929 |
ggaagaagaaaataatcaaaagagaaattgaaaatgactatggcaatggcaaccctttgaaagagcttttctatatgttttgttggaaaagaccatcaac |
8058028 |
T |
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| Q |
568 |
ttctttgagacaaacaggttttactccaccggagctttgttcatcgatgagaataaatgacaattttgtccatgaccctcaagtacaaactagcaaagag |
667 |
Q |
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| T |
8058029 |
ttctttgagacaaacaggttttactccaccggagctttgttcatcgatgagaataaatgacaattttgtccatgaccctcaagtacagaccagcaaagag |
8058128 |
T |
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| Q |
668 |
tttcttttcaaaccctatggcgaagatggaatcgacgcagattacatgatgcaacatcatcacgacggccttttaggtcatccgagattcttgttcacga |
767 |
Q |
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| T |
8058129 |
tttcttttcaaaccctatggcgaagatgtaatcgacgcagattacatgatgcaacatcatcacgacggccttttaggtcatccgagattcttgttcacaa |
8058228 |
T |
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| Q |
768 |
tagttgaagaatcaaaagaggatttagaatccgaagatggtaaatgtggaaaggattcaagaggtagaagcttaggtgatttgttagatgtggaaacacc |
867 |
Q |
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| T |
8058229 |
tagttgaagaatcaaaagaggatttagaatctgaagacggtaaatgtggaaaggattcaagaggtagaagcttaggtgatctgttagatgtggaaacacc |
8058328 |
T |
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| Q |
868 |
ttatttgacacctatagcatctccacattttttcactcctatgaattgtagtccttattgtagcccttat-atc-acatggattcaaccctcctctttga |
965 |
Q |
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| T |
8058329 |
ttatttgacacctatagcatctccacattttttcactcctatgaattgtagtccttattgtagcccttataatcaacatggattcaaccct-ctttttga |
8058427 |
T |
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| Q |
966 |
atcaacaactgatgcagggttcaataagattaaagtc |
1002 |
Q |
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| T |
8058428 |
atcaacaactgatgcagagttcaat-agattaaagtc |
8058463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 8 - 267
Target Start/End: Original strand, 8057439 - 8057698
Alignment:
| Q |
8 |
attgtattggtttacattgaaattgaattctagtcaaaaggaatatccagatttgcatgctttagttcaaaatttgatcctagagggttcagatttagac |
107 |
Q |
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| T |
8057439 |
attgtattggtttacattgaaattgaattctagtcaaaaggaatatccagatttgcatgcttgagttcaaaatttgatcctagagggttcagatttagac |
8057538 |
T |
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| Q |
108 |
aaagtaaattaccaagtaagctttttcatttactcttgaatatgtgtaattctcattgttaaaatttggttgtaattattcttttttggtattcaattgg |
207 |
Q |
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| T |
8057539 |
aaagtaaattaccaagtaagctttttcatttactcttgaatatgtgtaattctcattgttaaaatttggttgtaattattcttttttggtattcaattgg |
8057638 |
T |
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| Q |
208 |
tcaattagttatgactatctagattagatgttaattattttggccattgaacattgtttt |
267 |
Q |
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| T |
8057639 |
tcaattagttatgactatctagattagatgttaattattttggccactgaacattgtttt |
8057698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 814 - 883
Target Start/End: Complemental strand, 10429109 - 10429040
Alignment:
| Q |
814 |
tggaaaggattcaagaggtagaagcttaggtgatttgttagatgtggaaacaccttatttgacacctata |
883 |
Q |
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| T |
10429109 |
tggaaaggattcaataggtagaagcttaggttatttgttagatttgaaaacaccttatttgacacttata |
10429040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 666 - 718
Target Start/End: Complemental strand, 10429215 - 10429163
Alignment:
| Q |
666 |
agtttcttttcaaaccctatggcgaagatggaatcgacgcagattacatgatg |
718 |
Q |
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| T |
10429215 |
agtttctttttgaaccctatggtgaagatggaatcgaagcagaatacatgatg |
10429163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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