View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4441-Insertion-2 (Length: 911)
Name: NF4441-Insertion-2
Description: NF4441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4441-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 558; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 145 - 829
Target Start/End: Complemental strand, 36943091 - 36942413
Alignment:
| Q |
145 |
agagacgaaaaggtaaagagctacactctgtcgggccttttgttctatttaagtaagcttttcctctgcaaatggatcattacaattaaagaataattcg |
244 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36943091 |
agagacgaaaaggtaaagagctacactctgtcgggccttttgttctatttaattaagtttttcctctgaaaatggatcattacaattaaagaataattcg |
36942992 |
T |
|
| Q |
245 |
tttccctaatcacaattaaagcatatatatcctccccttcttgattag-accattaatcaagttatgaaactcctatatatatttatctcacaaccgtac |
343 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36942991 |
tttccctaatcacaattaaagcatatatatcctccccttcttgattaggaccattaatcaagttatgaaactcatatatatatttatctcacaaccgtac |
36942892 |
T |
|
| Q |
344 |
tcacgctccggattgtgagtgactcattcttcttaaataaaaattaacaacaacnnnnnnnngaaattaagattccatagttcccttttcgtttagatga |
443 |
Q |
| |
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|| ||||||||||| |||||||| ||||||||| ||||||||||||||| ||||||||||||| ||| | |||||||||||||||||| |
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| T |
36942891 |
tc------cggattgtgagagactcatttttcttaaatgaaaattaacaacaacaaaaaaa-gaaattaagattctataatccccttttcgtttagatga |
36942799 |
T |
|
| Q |
444 |
tgtatcgtatcataaatattttatttgtatgtttttctttacaactaaaaataattattgttataattttagatagacaagtttccctcaacaaaatttt |
543 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36942798 |
tgtatcgtatcacaaatattttatttgtatgtttttctttacaactaaaaataattattgttataattttagatagacaaatttccctcaacaaaatttt |
36942699 |
T |
|
| Q |
544 |
ccacttttgttggtgttttggttctccatcgtcgtttgtctttctccctccctagtggagctcaattcgactcccatcttgtgggtgtgatgctattccc |
643 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36942698 |
ccacttttgttagtgttttggttctccatcgtcgtttgtctttctccctccctagtggagctcaattcgactcccatctggtgggtgtgatgctattccc |
36942599 |
T |
|
| Q |
644 |
tctccttctcgacatttcttcaacccacacttccgatggtgctccgatcccatgggtcgtgtttcggaagccacagattaaacaccacaatgcccagcga |
743 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36942598 |
tctccttctcgacatttcttcaacccacacttccaatggtgctccgatcccatgagtcgtgtttcggaagccacagattaaacaccacaatgcccagcga |
36942499 |
T |
|
| Q |
744 |
tcgccatcacaaacaacaacctctcaaccacatatcctcattgaaaacctccctctctccattatcaaagctacactcatgggtca |
829 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36942498 |
tcgccatcacaaacaacaacctctcaaccacatatcctcattgaaaacatccctctctccattatcaaagctacactcatgggtca |
36942413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 145 - 580
Target Start/End: Complemental strand, 36950801 - 36950372
Alignment:
| Q |
145 |
agagacgaaaaggtaaagagctacactctgtcgggccttttgttctatttaagtaagcttttcctctgcaaatggatcattacaattaaagaataattcg |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36950801 |
agagacgaaaaggtaaagagctacactctgtcgggccttttgttctatttaattaagtttttcctctgaaaatggatcattacaattaaagaataattcg |
36950702 |
T |
|
| Q |
245 |
tttccctaatcacaattaaagcatatatatcctccccttcttgatta-gaccattaatcaagttatgaaactcctatatatatttatctcacaaccgtac |
343 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36950701 |
tttccctaatcacaattaaagcatatatatcctccccttcttgattaggaccattaatcaagttatgaaactcgtatatatatttatctcacaaccgta- |
36950603 |
T |
|
| Q |
344 |
tcacgctccggattgtgagtgactcattcttcttaaataaaaattaacaacaacnnnnnnnngaaattaagattccatagttcccttttcgtttagatga |
443 |
Q |
| |
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|||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||| |
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| T |
36950602 |
-----ctccggattgtgagagactcattcttcttaaatgaaaattaacaacaac-aaaaaaagaaattaggattccatagtccccttttcgtttagatga |
36950509 |
T |
|
| Q |
444 |
tgtatcgtatcataaatattttatttgtatgtttttctttacaactaaaaataattattgttataattttagatagacaagtttccctcaacaaaatttt |
543 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36950508 |
tgtatcgtatcacaaatattttatttgtatgtttttctttacaactaaaaataattattgttataattttagatagacaaatttccctcaacaaaatttt |
36950409 |
T |
|
| Q |
544 |
ccacttttgttggtgttttggttctccatcgtcgttt |
580 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
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| T |
36950408 |
ccacttttgttagtgttttggttctccatcgtcgttt |
36950372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 36943195 - 36943091
Alignment:
| Q |
8 |
cagatatgttgttcccttggattattgggtgtcagtgaccctggaacatttatctatctatttatagtatattgttattgattctttaaggttctttacg |
107 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36943195 |
cagatatgttattcccttggattattgggtgtcagtgaccctggaacatttatctatctatttatagtatactgttattgattctttaaggttctttacg |
36943096 |
T |
|
| Q |
108 |
tgtga |
112 |
Q |
| |
|
||||| |
|
|
| T |
36943095 |
tgtga |
36943091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 36950905 - 36950801
Alignment:
| Q |
8 |
cagatatgttgttcccttggattattgggtgtcagtgaccctggaacatttatctatctatttatagtatattgttattgattctttaaggttctttacg |
107 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36950905 |
cagatatgttattcccttggattattgggtgtcagtgaccctggaacatttatctatctatttatagtatactgttattgattctttaaggttctttacg |
36950806 |
T |
|
| Q |
108 |
tgtga |
112 |
Q |
| |
|
||||| |
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|
| T |
36950805 |
tgtga |
36950801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 825 - 907
Target Start/End: Complemental strand, 36936392 - 36936310
Alignment:
| Q |
825 |
ggtcagaatcccaaacgcccaactcctaggaaagatatacttctccagtctaaatccgggtagaaatgtcctatcatgtttca |
907 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36936392 |
ggtcagaatcccaaatgcccaactcctaggaaagatatacttctccagtctaaatccgggtagaaatgtcctatcatgtttca |
36936310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 63 - 328
Target Start/End: Complemental strand, 36933810 - 36933553
Alignment:
| Q |
63 |
atctatttatagtatattgttattgattctttaaggttctttacgtgtgaaatgatagatgataacatctatctattttgtaagagacgaaaaggtaaag |
162 |
Q |
| |
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|||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| ||| ||| ||||||||| ||| ||| |||||||||||| |
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| T |
36933810 |
atctatatatagtatattgtaattgattctttaaggttcgttacgtgtgaaatgat-gat--taa----tatctatttcttaacagatgaaaaggtaaag |
36933718 |
T |
|
| Q |
163 |
-agctacac--tctgtcgggccttttgttctatttaagtaagcttttcctctgcaaatggatcattacaattaaagaataattcgtttccctaatcacaa |
259 |
Q |
| |
|
|||||||| ||||||| ||||||||| |||||||| ||||||||||||||| || | ||||||||||||| ||||| |||||||| || ||| |
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|
| T |
36933717 |
gagctacacgatctgtcgcaccttttgttatatttaagct---ttttcctctgcaaatctattactacaattaaagaacaattcttttccctattcgcaa |
36933621 |
T |
|
| Q |
260 |
ttaaagcatatatatcctccccttcttgatta-gaccattaatcaagttatgaaactcctatatatattt |
328 |
Q |
| |
|
| ||| |||||||||||||| |||||||||| ||| ||||| | || |||||||||| ||||||||||| |
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|
| T |
36933620 |
taaaa--atatatatcctccctttcttgattaggacgattaaactaggtatgaaactcgtatatatattt |
36933553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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