View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4441-Insertion-4 (Length: 773)
Name: NF4441-Insertion-4
Description: NF4441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4441-Insertion-4 |
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| [»] chr5 (10 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 748; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 6 - 773
Target Start/End: Complemental strand, 37845041 - 37844274
Alignment:
| Q |
6 |
cagtagtgtgcgtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaa |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37845041 |
cagtagtgtgcgtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaa |
37844942 |
T |
|
| Q |
106 |
attcaaacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtaatcatttaggttctc |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37844941 |
attcaaacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttaggttctc |
37844842 |
T |
|
| Q |
206 |
tgtagcctccaaaactaggtcctgaagggcattgattttattggcatttaagaagtatgatttgggttgataatacaaggattgttgaaggtgcgtatat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37844841 |
tgtagcctccaaaactaggtcctgaagggcattgattttattggcatttaagaagtatgatttgggttgataatacaaggattgttgaaggtgcatatat |
37844742 |
T |
|
| Q |
306 |
tggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaatcaaacaaggccaaacataggttactt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844741 |
tggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaatcaaacaaggccaaacataggttactt |
37844642 |
T |
|
| Q |
406 |
ttggaacattcagagcagctaccttcacaagcttttcagctattatcttaccatttcccatcagtttaactaaaagtccatcaatacaaattgttggttt |
505 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37844641 |
ttggaacattcagagcagctaccttcacaagcttttcagctattatcttaccatttcccatcagtttaactaaaagcccatcaatacaaattgttggttt |
37844542 |
T |
|
| Q |
506 |
gagattccaatcatcttcaacaccgaatccagatagaaattgatcaacgtcatgccaaaagctagagtcactataataatccataggttcatgttcagtg |
605 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844541 |
gagattccaatcatcttcaacaccgaatccagatagaaattgatcaatgtcatgccaaaagctagagtcactataataatccataggttcatgttcagtg |
37844442 |
T |
|
| Q |
606 |
tcctgccaaaagccaaagtcactataataatccataggatccgtctccatattaaatgtaacttctctttgtctttgggcagctgccctactgctttctc |
705 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844441 |
tcctgccaaaagccaaagtcactataataatccataggatccgtctccatattaaatataacttctctttgtctttgggcagctgccctactgctttctc |
37844342 |
T |
|
| Q |
706 |
catgtagattgtggtcaatgctgacaaatggaatgttagggagcatattagctgcaaccgcatcacca |
773 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844341 |
catgtagattgtggtcaatgctgacaaatggaatgttagggagcatattagctgcaaccgcatcacca |
37844274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 6 - 213
Target Start/End: Complemental strand, 37832058 - 37831851
Alignment:
| Q |
6 |
cagtagtgtgcgtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaa |
105 |
Q |
| |
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||||||| ||||| ||| ||||||||| ||||||||||||| |||||||||||||||| ||| |||| |||||| || |||| ||||||| |||| |
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| T |
37832058 |
cagtagtctgcgtgtttgatcaaatttcgatgcttaaacatcccaaggacttcaatttcgttgcgtatgatacttagccgctttttcttgttccacccaa |
37831959 |
T |
|
| Q |
106 |
attcaaacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtaatcatttaggttctc |
205 |
Q |
| |
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|||| | |||||||| ||||||| | || ||||||| ||| ||||||||||| ||| |||| ||||| ||||||| ||||| | | |||||||||||| |
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| T |
37831958 |
attcgaccttctttacagcaaaaacatgctgaccaattatggctttgtacacagtaccatgtcctcccttgccaatgatataacattgatttaggttctc |
37831859 |
T |
|
| Q |
206 |
tgtagcct |
213 |
Q |
| |
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||||||| |
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| T |
37831858 |
agtagcct |
37831851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 37843174 - 37842947
Alignment:
| Q |
6 |
cagtagtgtgcgtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaa |
105 |
Q |
| |
|
||||||| |||||||| |||| ||| |||||||| ||||| |||| ||||||||||||||| |||| | || ||| || || |||| ||| | |
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| T |
37843174 |
cagtagtcagcgtatttgatcacgtttcgatgcttatacattccaagcacttcaatttcattgcacatcatacgtagccgctttaccctgttgcttgtga |
37843075 |
T |
|
| Q |
106 |
attcaaacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtaatcatttaggttctc |
205 |
Q |
| |
|
||||||||||||||| |||| || | ||||||||||| | | ||||||||||| ||| ||||||||| || ||||||||||| | |||| |||||||||| |
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| T |
37843074 |
attcaaacttctttacagcataaacctgttgaccaagcaaagctttgtacacaataccatgtgctcctcttccaataatatattgatcacttaggttctc |
37842975 |
T |
|
| Q |
206 |
tgtagcctccaaaactaggtcctgaagg |
233 |
Q |
| |
|
|||||||| ||| ||||| | ||||||| |
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| T |
37842974 |
tgtagcctgcaacactagtttctgaagg |
37842947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 101 - 223
Target Start/End: Complemental strand, 37837454 - 37837332
Alignment:
| Q |
101 |
tccaaattcaaacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtaatcatttagg |
200 |
Q |
| |
|
|||||||||||||||||||| |||| |||| || | | || ||| ||||||||||| ||| ||||||||| || ||||||||||| | |||||||||| |
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| T |
37837454 |
tccaaattcaaacttctttacagcacaagcctgctcattaattatggctttgtacacaataccatgtgctcctcttccaataatatactgatcatttagg |
37837355 |
T |
|
| Q |
201 |
ttctctgtagcctccaaaactag |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
37837354 |
ttctctgtagcctccaaaactag |
37837332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 28089942 - 28089826
Alignment:
| Q |
101 |
tccaaattcaaacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtaatcatttagg |
200 |
Q |
| |
|
||||||||||| ||||||| |||| || | |||||||||| || ||||||||||| ||| ||||||||| ||||||| |||||| ||||||||||| |
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| T |
28089942 |
tccaaattcaactttctttacagcacaaacctgttgaccaatcatggctttgtacacaataccatgtgctcctctgccaacaatataccaatcatttagg |
28089843 |
T |
|
| Q |
201 |
ttctctgtagcctccaa |
217 |
Q |
| |
|
||||||||||| ||||| |
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| T |
28089842 |
ttctctgtagcttccaa |
28089826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 279 - 402
Target Start/End: Complemental strand, 35025610 - 35025487
Alignment:
| Q |
279 |
tacaaggattgttgaaggtgcgtatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaa |
378 |
Q |
| |
|
|||||||||| || |||| | ||||||| |||||||||| || |||||||| |||||||||||||||| || ||||||| | |||||||||||| | |
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| T |
35025610 |
tacaaggatttctgcaggtacctatattgaccccaacgtgttaggaaaaaccagttgaaaggtttggtaagtattggaccagtgatagagggaaggaaga |
35025511 |
T |
|
| Q |
379 |
tcaaacaaggccaaacataggtta |
402 |
Q |
| |
|
|||||| ||||||| ||||||||| |
|
|
| T |
35025510 |
tcaaactaggccaagcataggtta |
35025487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 294 - 413
Target Start/End: Complemental strand, 37851957 - 37851838
Alignment:
| Q |
294 |
aggtgcgtatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaatcaaacaaggccaaa |
393 |
Q |
| |
|
|||||| ||||||| |||||| |||| || |||||||| |||||||||||||||| || ||||||| | ||||||| |||| ||||||| || |||| |
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|
| T |
37851957 |
aggtgcctatattgaccccaatgtgataggaaaaaccagttgaaaggtttggtaagtattggaccagtgatagagggacggaagatcaaactagaccaag |
37851858 |
T |
|
| Q |
394 |
cataggttacttttggaaca |
413 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
37851857 |
cataggttatttttggaaca |
37851838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 277 - 411
Target Start/End: Complemental strand, 37838645 - 37838511
Alignment:
| Q |
277 |
aatacaaggattgttgaaggtgcgtatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaa |
376 |
Q |
| |
|
|||||||||||| || ||||| ||||||| ||||||||||| || ||||||||||||||||||||||||| || |||||| | ||||||| |||| |
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| T |
37838645 |
aatacaaggatttctgcaggtgtctatattgaccccaacgtgataggaaaaaccaattgaaaggtttggtaagtattggaccggtgatagagggacggaa |
37838546 |
T |
|
| Q |
377 |
aatcaaacaaggccaaacataggttacttttggaa |
411 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||| |
|
|
| T |
37838545 |
gatcaaaattggccaagcataggttatttttggaa |
37838511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 217
Target Start/End: Complemental strand, 37850868 - 37850678
Alignment:
| Q |
27 |
aaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaattcaaacttctttaaagcaa |
126 |
Q |
| |
|
|||||| ||||||||||||| | |||||||||| ||| ||| | ||| |||||| || ||| ||||||| || ||||||| |||||||| |||| |
|
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| T |
37850868 |
aaatttcgatgcttaaacatccctaggacttcaacttcgttgcgcgtgatacttagccgcttttgcttgttccgtctgaattcaaccttctttacagcac |
37850769 |
T |
|
| Q |
127 |
aagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtaatcatttaggttctctgtagcctccaa |
217 |
Q |
| |
|
|| | || || || |||| ||||||||||| ||| ||||||||| | ||||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
37850768 |
aaacagtttcacaaattatagctttgtacacaataccatgtgctcctccaccaataatataccgatcatttaggttctcagtagcctccaa |
37850678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 301 - 428
Target Start/End: Complemental strand, 37833098 - 37832971
Alignment:
| Q |
301 |
tatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaatcaaacaaggccaaacataggt |
400 |
Q |
| |
|
||||||| |||||||| || || |||||||| |||||||||||||||| || ||||||| | |||||||| ||| ||||| | ||||| |||| || |
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| T |
37833098 |
tatattgaccccaacgcgataggaaaaaccagttgaaaggtttggtaagtattggaccattgatagagggaatgaaggtcaaatgacgccaagcataagt |
37832999 |
T |
|
| Q |
401 |
tacttttggaacattcagagcagctacc |
428 |
Q |
| |
|
|| |||||||| | | |||||||||||| |
|
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| T |
37832998 |
tatttttggaagaattagagcagctacc |
37832971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 279 - 413
Target Start/End: Complemental strand, 36867324 - 36867190
Alignment:
| Q |
279 |
tacaaggattgttgaaggtgcgtatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaa |
378 |
Q |
| |
|
|||||||||| || |||| | ||||||| ||||||||||| || |||||||| |||||||||||| ||| || | || | | |||||||||||| | |
|
|
| T |
36867324 |
tacaaggatttctgcaggtacctatattgaccccaacgtgataggaaaaaccagttgaaaggtttgataagtattaaactagtgatagagggaaggaaga |
36867225 |
T |
|
| Q |
379 |
tcaaacaaggccaaacataggttacttttggaaca |
413 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||||||| |
|
|
| T |
36867224 |
tcaaactaggccaaacatagtttatttttggaaca |
36867190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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