View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4441_high_4 (Length: 254)
Name: NF4441_high_4
Description: NF4441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4441_high_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 54615028 - 54614792
Alignment:
| Q |
18 |
agaacactgagatacaatcattcatggaagagaaaagttgtccaccatgcaatgccaatttagggtaacaaggttcctcaggcatcttccctttcatcaa |
117 |
Q |
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| T |
54615028 |
agaacactgagatacaatcattcatggaagagaaaagttgtccaccatgcaatgccaatttagggtaacaaggttcctcaggcatcttccctttcatcaa |
54614929 |
T |
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| Q |
118 |
cctacttctagaactccacctcacactgttagcagcagaacttctcaaatccatgaaacccaattcctcaaactcattcaccacacaaattgaactatta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54614928 |
cctacttctagaactccacctcacactgttagcagcagaacttctcaaatccatgaaacccaattcctcaaactcattcaccacacaaattgaactatta |
54614829 |
T |
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| Q |
218 |
tcctccattgcaattgcatccctcacccttttctcat |
254 |
Q |
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| T |
54614828 |
tcctccattgcaattgcatccctcacccttttctcat |
54614792 |
T |
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