View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4441_low_1 (Length: 430)
Name: NF4441_low_1
Description: NF4441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4441_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 230 - 415
Target Start/End: Original strand, 24447889 - 24448080
Alignment:
| Q |
230 |
cactgtaccattttaataaaatgatctaaaattgatttaataaaagaatacttattaaattagtgaaagagtattagtgtattgttatttataaac---- |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24447889 |
cactgtaccattttaataaaatgatctaaaattgatttaataaaagaatacttattaaattagtgaaagagtagtagtgtattgttatttataaactaga |
24447988 |
T |
|
| Q |
326 |
--taaacaaaatgtaaattttaaaacataaactactaattctttattgtcccatcgataaataattataactctagttgtaagcataaactt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24447989 |
aataaacaaaatgtaaattttaaaacataaactaataattttttattgtcccatcgataaataattataattctagttgtaagcataaactt |
24448080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 24443759 - 24443915
Alignment:
| Q |
8 |
aagcataggagttataaatcaaaagccagaacaataagtattgaaatataaaattgagaagaacgaatctactgccgttaataatttgcacccctaatga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24443759 |
aagcataggagttataaatcaaaagccagaacaataagtattgaaatataaaattgaaaagaacaaatctactgccgttaataatttgcacccctaatga |
24443858 |
T |
|
| Q |
108 |
aatgataaataaagggcagtgtctactataagcatgatctaaaagtagatattactc |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24443859 |
aatgataaataaagggcagtgtctactataagcatgatctaaaagtagatattactc |
24443915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University