View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4441_low_2 (Length: 340)
Name: NF4441_low_2
Description: NF4441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4441_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 16961387 - 16961724
Alignment:
| Q |
1 |
tcatcaagtactagtgattgaagattgttaagatgtgaaagctgagatggtatttctccactaaagtaatttgagctaatgttaagtatttctagtgaag |
100 |
Q |
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| T |
16961387 |
tcatcaagtactaatgattgaagattgttaagatgtgaaagttgagatggtatttctccactaaagtaatttgagctaatgttaagtatttctagtgaag |
16961486 |
T |
|
| Q |
101 |
ataattgagctattgtttcaggtagtggcccccataaaccaagagaaaccaaagagagtactttcaagcttgataaagtggaaagtgttgaaaagagtgt |
200 |
Q |
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| T |
16961487 |
ataattgagctattgtttcaggtagtggcccccataaaccaagtgaaaccaaagagagtactttcaagcttgataaagtggaaagtgttgaaaagagtgt |
16961586 |
T |
|
| Q |
201 |
gtatgagttgaaattttgaggcaatgaagtaaactcattgttgtttccaacaacatgcaactgtgtaacattttcttcatagcacactagtgttaaatat |
300 |
Q |
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||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16961587 |
gtatgagttgaaattttgaggcaatgaggtgaactcattggtgtttccaacaacatgcaactgtgtaacattttcttcatagcacactagtgttaaatat |
16961686 |
T |
|
| Q |
301 |
ggagtaggttcaatgttgcagaaatctgtggtgctgct |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
16961687 |
ggagtaggttcaatgttgcagaaatctgtggtgctgct |
16961724 |
T |
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