View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4441_low_3 (Length: 290)
Name: NF4441_low_3
Description: NF4441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4441_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 37193377 - 37193639
Alignment:
| Q |
18 |
cagtagcgatcactcaccgcacaaacaaacaagcaaacgtggctttcatttgttgactgtgctaaagggtttctgccatctaccgaatgtagaaccagct |
117 |
Q |
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| T |
37193377 |
cagtagcgatcactcaccgcacaaacaaacaagcaaacgtggctttcatttgttgactgtgctaaagggtttctgccatctaccgaatgtagaaccagct |
37193476 |
T |
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| Q |
118 |
cttataaacatacatcccatttagccaatccaaaggtatacagcaggagagaaaatttatacatgaaaaaggtatcttaattttcctgtgaatatttcct |
217 |
Q |
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| T |
37193477 |
cttataaacatacatcccatttagccaatccaaaggtatgcagcaggagagaaaatttatacatgaaaaaggtatcttaattttcctgtgaatatttcct |
37193576 |
T |
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| Q |
218 |
aaagcacaattaatggatggacttgcaaaatgtgacaaacctatctgtgaaaactaaagaaaa |
280 |
Q |
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| T |
37193577 |
aaagcacaattaatggatggacttgcaaaatgtgacaaacctatctgtgaaaactaaagaaaa |
37193639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 37182245 - 37182507
Alignment:
| Q |
18 |
cagtagcgatcactcaccgcacaaacaaacaagcaaacgtggctttcatttgttgactgtgctaaagggtttctgccatctaccgaatgtagaaccagct |
117 |
Q |
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| T |
37182245 |
cagtagcgatcactcaccgcacaaacaaacaagcaaacgtggctttcatttgttgactgtgctaaagggtttctgccatctaccgaatgtagaaccagct |
37182344 |
T |
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| Q |
118 |
cttataaacatacatcccatttagccaatccaaaggtatacagcaggagagaaaatttatacatgaaaaaggtatcttaattttcctgtgaatatttcct |
217 |
Q |
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| T |
37182345 |
cttataaacatacatcccatttagccaatccaaaggtatgcagcaagagagaaaatttatacatgaaaaaggtatcttaattttcctgtgaatatttcct |
37182444 |
T |
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| Q |
218 |
aaagcacaattaatggatggacttgcaaaatgtgacaaacctatctgtgaaaactaaagaaaa |
280 |
Q |
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| T |
37182445 |
aaagcacaattaatggatggacttgcaaaatgtgacaaacctatctgtgaaaactaaagaaaa |
37182507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 159
Target Start/End: Original strand, 37216489 - 37216578
Alignment:
| Q |
73 |
actgtgctaaagggtttctgccatctaccga---atgtagaaccagctcttataaacatacatcccatttagccaatccaaaggtataca |
159 |
Q |
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| T |
37216489 |
actgtgctaaagggtttctgtcatctacaaacttatatagaagcagctcttattggcatacatgccatttagccaacccaaaggtataca |
37216578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 273
Target Start/End: Original strand, 37211065 - 37211161
Alignment:
| Q |
176 |
atacatgaaaaaggtatcttaattttcctgtgaatatttcc-taaagcacaattaatggatggacttgcaaaatgtgacaaacctatctgtgaaaacta |
273 |
Q |
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| T |
37211065 |
atacatgcaaaaggtatgttacttttcttgtgagcatttccctaaagcacaatcaatgga-ggacttgc-aaatgtgacaaagttatcgttgaaaacta |
37211161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 246
Target Start/End: Original strand, 37201503 - 37201570
Alignment:
| Q |
178 |
acatgaaaaaggtatcttaattttcctgtgaatatttcctaaagcacaattaatggatggacttgcaaa |
246 |
Q |
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| T |
37201503 |
acatgcaaaagttatgttacttttcctgtgaacagttcctaaagcataatcaatgga-ggacttgcaaa |
37201570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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