View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4441_low_7 (Length: 219)
Name: NF4441_low_7
Description: NF4441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4441_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 19199524 - 19199710
Alignment:
| Q |
14 |
cagagaaaacatgagattttcaatggtgagattctgatcaaacaagggttctcaatagttttcatattcaatatttaatttattgtaaaataacgttgaa |
113 |
Q |
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| T |
19199524 |
cagagaaaacatgagattttcaatggtgagattctgatcaaacaagggttctcaatagttttcatattcaatatttaatttattgcaaaataacgttgaa |
19199623 |
T |
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| Q |
114 |
aaactagctttttcaatcttgttaccaccattaacatggtaaatattgtaacaataagcaagatatttatgactgcaatatatttgc |
200 |
Q |
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| T |
19199624 |
aaactagctttttcaatcttgttaccaccatttacatggtaaatattgtaacaataagcaagatatatatgactgcaatatatttgc |
19199710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 19203268 - 19203361
Alignment:
| Q |
74 |
ttcatattcaatatttaatttattgtaaaataacgttgaaaaactagctttttcaatcttgttaccaccattaacatggtaaatattgtaacaa |
167 |
Q |
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| T |
19203268 |
ttcatattcaatattcaacttattgcaaactagccttgaaaaactagcttttccaatcttgttgccaccattatcatggtaaatattgtaacaa |
19203361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 19203212 - 19203244
Alignment:
| Q |
15 |
agagaaaacatgagattttcaatggtgagattc |
47 |
Q |
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| T |
19203212 |
agagaaaacatgagattttcaatggagagattc |
19203244 |
T |
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