View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4442_high_5 (Length: 324)

Name: NF4442_high_5
Description: NF4442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4442_high_5
NF4442_high_5
[»] chr7 (27 HSPs)
chr7 (18-234)||(38128855-38129072)
chr7 (61-234)||(3012346-3012519)
chr7 (97-271)||(21688114-21688289)
chr7 (61-310)||(814891-815140)
chr7 (61-256)||(42439480-42439675)
chr7 (131-234)||(28694016-28694119)
chr7 (136-254)||(21932760-21932877)
chr7 (64-230)||(4843344-4843514)
chr7 (61-148)||(26722877-26722964)
chr7 (66-194)||(41862269-41862397)
chr7 (131-230)||(19377435-19377534)
chr7 (179-310)||(30852303-30852434)
chr7 (173-234)||(41759626-41759687)
chr7 (97-148)||(23704444-23704495)
chr7 (173-240)||(23704487-23704554)
chr7 (61-119)||(28693921-28693979)
chr7 (176-250)||(38991181-38991255)
chr7 (173-234)||(26722956-26723017)
chr7 (97-148)||(35300403-35300454)
chr7 (173-234)||(35300446-35300507)
chr7 (61-112)||(41759545-41759596)
chr7 (61-119)||(7873138-7873196)
chr7 (61-119)||(21932660-21932718)
chr7 (61-119)||(22206604-22206662)
chr7 (61-119)||(22228077-22228135)
chr7 (179-232)||(7873232-7873285)
chr7 (61-117)||(5991338-5991394)
[»] chr3 (35 HSPs)
chr3 (94-299)||(33179064-33179268)
chr3 (63-233)||(41218275-41218449)
chr3 (103-287)||(53068231-53068415)
chr3 (61-148)||(26370960-26371047)
chr3 (61-146)||(37516739-37516824)
chr3 (61-148)||(25391763-25391850)
chr3 (173-234)||(26371039-26371100)
chr3 (172-301)||(53651873-53652002)
chr3 (131-211)||(41358590-41358670)
chr3 (173-231)||(37516687-37516745)
chr3 (179-256)||(53987884-53987961)
chr3 (173-301)||(44047559-44047687)
chr3 (97-148)||(7501051-7501102)
chr3 (201-256)||(44625718-44625773)
chr3 (190-256)||(9600370-9600436)
chr3 (173-230)||(7501002-7501059)
chr3 (174-234)||(38239495-38239555)
chr3 (173-256)||(14461085-14461168)
chr3 (97-148)||(14461160-14461211)
chr3 (97-148)||(43700168-43700219)
chr3 (61-119)||(28311422-28311480)
chr3 (61-119)||(43700111-43700169)
chr3 (65-119)||(44047729-44047783)
chr3 (66-119)||(7501101-7501154)
chr3 (197-245)||(47511686-47511734)
chr3 (101-148)||(12909923-12909970)
chr3 (173-256)||(25391842-25391925)
chr3 (179-234)||(26278405-26278460)
chr3 (173-244)||(28311309-28311380)
chr3 (97-148)||(28311372-28311423)
chr3 (97-148)||(44047679-44047730)
chr3 (97-148)||(53651993-53652044)
chr3 (61-119)||(14461210-14461268)
chr3 (179-233)||(35077267-35077321)
chr3 (66-119)||(53987976-53988029)
[»] chr5 (39 HSPs)
chr5 (97-256)||(15503930-15504089)
chr5 (61-233)||(21069046-21069218)
chr5 (65-301)||(36234477-36234717)
chr5 (98-234)||(17192601-17192737)
chr5 (128-234)||(16667455-16667561)
chr5 (61-148)||(33006996-33007083)
chr5 (61-208)||(13942671-13942821)
chr5 (61-234)||(12267301-12267477)
chr5 (65-148)||(34846456-34846539)
chr5 (50-234)||(767318-767505)
chr5 (173-256)||(30248979-30249062)
chr5 (173-234)||(33006943-33007004)
chr5 (173-234)||(35468939-35469000)
chr5 (124-204)||(8214621-8214701)
chr5 (61-119)||(15675452-15675510)
chr5 (94-148)||(30249054-30249108)
chr5 (61-119)||(2476504-2476562)
chr5 (61-119)||(7162002-7162060)
chr5 (61-119)||(14832729-14832787)
chr5 (173-231)||(15675352-15675410)
chr5 (61-119)||(35469042-35469100)
chr5 (173-234)||(34846403-34846464)
chr5 (97-141)||(14832786-14832830)
chr5 (97-148)||(2476454-2476505)
chr5 (97-204)||(6900800-6900907)
chr5 (61-116)||(30249107-30249162)
chr5 (97-148)||(34444055-34444106)
chr5 (97-148)||(35468992-35469043)
chr5 (85-151)||(39605784-39605850)
chr5 (173-245)||(34443991-34444063)
chr5 (61-116)||(1672405-1672460)
chr5 (61-119)||(16567930-16567988)
chr5 (179-233)||(32953680-32953734)
chr5 (61-119)||(37552053-37552111)
chr5 (61-119)||(37654883-37654941)
chr5 (66-119)||(6900906-6900959)
chr5 (66-119)||(34444105-34444158)
chr5 (101-141)||(15675409-15675449)
chr5 (197-233)||(42989571-42989607)
[»] chr1 (41 HSPs)
chr1 (61-214)||(34459165-34459318)
chr1 (50-301)||(9527014-9527265)
chr1 (65-245)||(6802006-6802190)
chr1 (97-310)||(4642012-4642225)
chr1 (131-256)||(24646067-24646192)
chr1 (61-148)||(33468889-33468976)
chr1 (61-204)||(49898442-49898585)
chr1 (131-232)||(24745450-24745551)
chr1 (64-148)||(6331775-6331859)
chr1 (173-301)||(27460665-27460793)
chr1 (61-148)||(31844559-31844646)
chr1 (173-301)||(25011554-25011682)
chr1 (173-256)||(27584031-27584114)
chr1 (63-148)||(8239382-8239467)
chr1 (173-240)||(31844638-31844705)
chr1 (97-148)||(14727419-14727470)
chr1 (173-231)||(14727369-14727427)
chr1 (173-310)||(44238876-44239014)
chr1 (173-234)||(6331722-6331783)
chr1 (173-256)||(37154008-37154091)
chr1 (173-256)||(44305426-44305509)
chr1 (61-119)||(14727469-14727527)
chr1 (61-119)||(25007603-25007661)
chr1 (61-119)||(37153908-37153966)
chr1 (172-301)||(25007433-25007562)
chr1 (158-234)||(48940419-48940495)
chr1 (97-148)||(27583988-27584039)
chr1 (94-148)||(1428391-1428445)
chr1 (94-148)||(25011509-25011562)
chr1 (61-119)||(44305551-44305609)
chr1 (66-119)||(27460818-27460871)
chr1 (196-256)||(4774021-4774081)
chr1 (61-116)||(1428337-1428392)
chr1 (64-119)||(4641958-4642013)
chr1 (97-148)||(25007553-25007604)
chr1 (97-148)||(37153965-37154016)
chr1 (97-148)||(44305501-44305552)
chr1 (50-95)||(25011444-25011489)
chr1 (173-214)||(33468968-33469009)
chr1 (61-117)||(4774113-4774169)
chr1 (173-234)||(8239327-8239390)
[»] chr2 (33 HSPs)
chr2 (61-302)||(17148750-17148994)
chr2 (61-240)||(17249349-17249528)
chr2 (97-310)||(304066-304277)
chr2 (102-287)||(12000506-12000692)
chr2 (131-256)||(41010490-41010615)
chr2 (97-243)||(15651235-15651381)
chr2 (131-287)||(33909317-33909473)
chr2 (66-184)||(45444376-45444494)
chr2 (173-256)||(6799903-6799986)
chr2 (131-226)||(25562980-25563075)
chr2 (173-301)||(13203737-13203865)
chr2 (61-204)||(16220946-16221089)
chr2 (173-256)||(18299160-18299243)
chr2 (61-146)||(2475919-2476004)
chr2 (61-119)||(29257506-29257564)
chr2 (65-148)||(22572643-22572726)
chr2 (173-244)||(41114887-41114958)
chr2 (50-119)||(18299049-18299118)
chr2 (173-250)||(22572718-22572795)
chr2 (173-298)||(29257339-29257464)
chr2 (97-148)||(6799860-6799911)
chr2 (97-148)||(18299117-18299168)
chr2 (65-119)||(41010652-41010706)
chr2 (61-119)||(41114787-41114845)
chr2 (72-119)||(25563112-25563159)
chr2 (97-148)||(41114844-41114895)
chr2 (94-148)||(13203857-13203911)
chr2 (85-151)||(34756831-34756897)
chr2 (97-141)||(29257463-29257507)
chr2 (165-240)||(34756722-34756797)
chr2 (85-154)||(15429315-15429384)
chr2 (218-310)||(2475783-2475875)
chr2 (64-116)||(13203910-13203962)
[»] chr8 (20 HSPs)
chr8 (131-310)||(34282873-34283052)
chr8 (101-231)||(39431608-39431738)
chr8 (131-231)||(13243133-13243233)
chr8 (61-148)||(24965122-24965209)
chr8 (173-301)||(24965002-24965130)
chr8 (94-148)||(28928149-28928203)
chr8 (190-298)||(38214731-38214839)
chr8 (173-256)||(28928073-28928157)
chr8 (61-117)||(36406407-36406463)
chr8 (66-226)||(31500736-31500902)
chr8 (173-230)||(36406507-36406564)
chr8 (97-148)||(3383994-3384045)
chr8 (190-301)||(27321885-27321996)
chr8 (98-141)||(36406465-36406508)
chr8 (65-119)||(34282782-34282836)
chr8 (61-119)||(35384283-35384341)
chr8 (61-116)||(27321780-27321835)
chr8 (61-119)||(38214865-38214923)
chr8 (50-119)||(3383926-3383995)
chr8 (165-245)||(21138068-21138148)
[»] chr4 (47 HSPs)
chr4 (72-231)||(25237616-25237775)
chr4 (64-310)||(52373699-52373949)
chr4 (131-310)||(49745000-49745179)
chr4 (94-310)||(8901764-8901979)
chr4 (50-256)||(41972349-41972538)
chr4 (97-234)||(2521873-2522010)
chr4 (61-148)||(10058627-10058714)
chr4 (60-148)||(31364225-31364313)
chr4 (97-287)||(50099824-50100011)
chr4 (173-300)||(40969195-40969322)
chr4 (132-234)||(36947555-36947657)
chr4 (173-301)||(31364105-31364233)
chr4 (181-301)||(50383858-50383978)
chr4 (94-148)||(4728648-4728702)
chr4 (61-116)||(4728701-4728756)
chr4 (61-119)||(4552325-4552383)
chr4 (173-231)||(10058577-10058635)
chr4 (94-148)||(40969314-40969368)
chr4 (61-122)||(2017355-2017416)
chr4 (50-119)||(2521805-2521874)
chr4 (173-234)||(4728595-4728656)
chr4 (165-226)||(31929041-31929102)
chr4 (173-256)||(10715670-10715754)
chr4 (173-256)||(10929440-10929524)
chr4 (97-148)||(10715746-10715797)
chr4 (97-148)||(10929516-10929567)
chr4 (61-116)||(40969367-40969422)
chr4 (61-119)||(10715796-10715854)
chr4 (61-119)||(10929566-10929624)
chr4 (61-119)||(32006023-32006081)
chr4 (61-119)||(46645743-46645801)
chr4 (173-234)||(46645640-46645701)
chr4 (173-301)||(4552155-4552283)
chr4 (241-317)||(9003510-9003586)
chr4 (97-148)||(4552275-4552326)
chr4 (50-100)||(2576331-2576381)
chr4 (61-119)||(50100010-50100068)
chr4 (100-148)||(2017415-2017463)
chr4 (94-146)||(2576264-2576316)
chr4 (173-256)||(2017455-2017538)
chr4 (63-121)||(11826968-11827026)
chr4 (179-233)||(14044395-14044449)
chr4 (247-301)||(25237534-25237588)
chr4 (173-233)||(2576209-2576270)
chr4 (50-119)||(14044464-14044533)
chr4 (179-231)||(9694139-9694191)
chr4 (97-141)||(32005980-32006024)
[»] chr6 (33 HSPs)
chr6 (97-234)||(2836142-2836279)
chr6 (158-254)||(339352-339448)
chr6 (173-301)||(10397810-10397938)
chr6 (173-256)||(34249031-34249114)
chr6 (173-251)||(1781040-1781118)
chr6 (61-148)||(1780961-1781048)
chr6 (173-251)||(23663777-23663855)
chr6 (61-119)||(34248931-34248989)
chr6 (173-240)||(9046933-9047000)
chr6 (173-240)||(9696086-9696153)
chr6 (61-119)||(9696195-9696253)
chr6 (61-118)||(10397727-10397784)
chr6 (97-148)||(9696145-9696196)
chr6 (61-116)||(15122186-15122241)
chr6 (97-148)||(15529036-15529087)
chr6 (61-119)||(339478-339536)
chr6 (61-119)||(2941362-2941420)
chr6 (179-301)||(2960654-2960776)
chr6 (173-234)||(2941259-2941320)
chr6 (173-234)||(15122080-15122141)
chr6 (97-148)||(2941312-2941363)
chr6 (97-148)||(9046890-9046941)
chr6 (94-141)||(15122140-15122187)
chr6 (102-161)||(31200137-31200196)
chr6 (131-194)||(34188859-34188922)
chr6 (66-119)||(23663682-23663735)
chr6 (60-116)||(31200073-31200130)
chr6 (61-121)||(31188230-31188290)
chr6 (173-230)||(15528987-15529044)
chr6 (124-161)||(31188314-31188351)
chr6 (190-234)||(14938945-14938989)
chr6 (63-119)||(15529086-15529142)
chr6 (64-116)||(28614325-28614377)
[»] scaffold0021 (2 HSPs)
scaffold0021 (61-209)||(112122-112271)
scaffold0021 (131-310)||(109275-109466)
[»] scaffold0618 (3 HSPs)
scaffold0618 (61-119)||(1835-1893)
scaffold0618 (173-298)||(1668-1793)
scaffold0618 (97-141)||(1792-1836)
[»] scaffold0075 (5 HSPs)
scaffold0075 (173-256)||(6925-7008)
scaffold0075 (61-119)||(11663-11721)
scaffold0075 (97-148)||(11613-11664)
scaffold0075 (173-245)||(11549-11621)
scaffold0075 (61-119)||(7050-7107)
[»] scaffold0638 (1 HSPs)
scaffold0638 (61-121)||(4215-4275)


Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 38128855 - 38129072
Alignment:
Q  18 atctaacatcgtgtcaatgacggagctaaaaattt-ataaaatatgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacattt 116  Q
    |||||| || |||||||||| ||||| | |||||| ||||||| | |||||||| |||||||| |||||||| |||||| ||||||||||||||||||||    
T  38128855 atctaatatggtgtcaatgatggagccagaaattttataaaatctaggcaaaaattttatcgcaaaacgttatttccttcctgcagataatttcacattt 38128954  T
Q  117 cctacacatatatctttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttc 216  Q
    ||| ||||||||||||||||||||||||||||||| |||| |||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  38128955 cctgcacatatatctttcctgcggatcctaaaatcctatgatattgcctcacctgggaacctaaatccttggcaaaatatgcaggaaatgtgtttccttc 38129054  T
Q  217 agaatttacacaaaaatc 234  Q
    ||||||||||||||||||    
T  38129055 agaatttacacaaaaatc 38129072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 61 - 234
Target Start/End: Complemental strand, 3012519 - 3012346
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtat 160  Q
    ||||||||||| |||| || ||||||||||||||| |||   ||||||||||||||||| |  |||||||||||||||||||||||||||| ||||||||    
T  3012519 tgggcaaaaaaattattgcaaaacgttacttccttcctgtgaataatttcacatttcctgcggatatatctttcctgcggatcctaaaatcctatggtat 3012420  T
Q  161 tgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
    | ||| ||||| ||||||| |||||||| ||||| |||||||| |||||||||| | |||| ||||||||||||    
T  3012419 tacctcacctgggaacctatatccttggcaaaatctgcaggaagtgtgtttcctgcggaatgtacacaaaaatc 3012346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 97 - 271
Target Start/End: Complemental strand, 21688289 - 21688114
Alignment:
Q  97 ctgcagataatttcacatttcc-tacacatatatctttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaata 195  Q
    ||||||||||||||||||||   |||  |||||||||||||||||||| ||||||| || ||||||  || |||||| ||||||||||||| | |||||     
T  21688289 ctgcagataatttcacattttaatacggatatatctttcctgcggatcttaaaatcctaaggtattatctcacctgataacctaaatccttcgcaaaatc 21688190  T
Q  196 tgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggact 271  Q
    ||||||||||||||||||| | |||||||||||||||||  ||||||||| ||||||||||  || ||||||||||    
T  21688189 tgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaagttctagtaatgactggact 21688114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 61 - 310
Target Start/End: Original strand, 814891 - 815140
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtat 160  Q
    ||||||||||| ||||||| |||||||||||| || ||||  |||||||||||||| || |  ||||||||||| ||| |||||||||||  || |||||    
T  814891 tgggcaaaaaaattatcgcaaaacgttacttcattcctgctaataatttcacattttctgcggatatatctttcgtgcagatcctaaaattctaaggtat 814990  T
Q  161 tgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttata 260  Q
    | ||| || || |||||||||| ||||| ||||| |||| ||||||| ||| || | |||||||||||||||||   |||||||| ||||||||||  ||    
T  814991 tacctcacttgggaacctaaattcttggcaaaatctgcaagaaatgtattttctgcggaatttacacaaaaatccgtaggaaaagctaaaagttctagta 815090  T
Q  261 ttgactggacttactacaaggaaagttagaactgagcctggattagtgcc 310  Q
     || || || || |||||| ||||||| || ||||||||||  |||||||    
T  815091 atggctagatttgctacaaagaaagttggagctgagcctgggctagtgcc 815140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 61 - 256
Target Start/End: Original strand, 42439480 - 42439675
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtat 160  Q
    ||||||||||||||||||| |||||||||||| ||||| |  |||||||||||||| ||||  ||||||||||| | || || |||||||  ||||||||    
T  42439480 tgggcaaaaaatttatcgcaaaacgttacttcttttctacgaataatttcacattttctacggatatatctttcatacgcattctaaaattctatggtat 42439579  T
Q  161 tgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttct 256  Q
    | |||  |||  |||||||||||||||| ||||| ||||| ||||||||||||| |  ||||||||||||| ||| |||| |||  ||||||||||    
T  42439580 tacctctcctaggaacctaaatccttggcaaaatctgcagaaaatgtgtttcctgcgaaatttacacaaaactctgcaggtaaaactaaaagttct 42439675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 28694016 - 28694119
Alignment:
Q  131 tttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaa 230  Q
    ||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||||| || ||||| ||||||||||||||||||| |||||||||||||||    
T  28694016 tttcctgcggatcctaaaatcctatggtattacctcacctgggaacctaaatcctgggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaa 28694115  T
Q  231 aatc 234  Q
    ||||    
T  28694116 aatc 28694119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 21932760 - 21932877
Alignment:
Q  136 tgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatct 235  Q
    ||||||||| |||||| ||||||||| ||| |||||  ||||||||||||||  ||||| ||||||||||||||||||| | ||||||||||||| |||     
T  21932760 tgcggatccaaaaatcctatggtattacctcacctggaaacctaaatccttgacaaaatctgcaggaaatgtgtttcctgcggaatttacacaaatatc- 21932858  T
Q  236 acaggaaaagttaaaagtt 254  Q
     ||||||||||||||||||    
T  21932859 gcaggaaaagttaaaagtt 21932877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 64 - 230
Target Start/End: Complemental strand, 4843514 - 4843344
Alignment:
Q  64 gcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacata-tatc---tttcctgcggatcctaaaatcttatggta 159  Q
    |||||||||||||||| |||||||||||| || ||||  ||||||||||||||||| |  ||| | ||   |||||||||||||||||||||  |  |||    
T  4843514 gcaaaaaatttatcgcaaaacgttacttctttcctgcgaataatttcacatttcctgcggataatttcacatttcctgcggatcctaaaatcccaatgta 4843415  T
Q  160 ttgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaa 230  Q
    || ||| ||||| |||||||||||||||| ||||| |||| |||||||||||| | | |||| ||||||||    
T  4843414 ttacctcacctgggaacctaaatccttggcaaaatctgcatgaaatgtgtttcatgcggaatgtacacaaa 4843344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 26722877 - 26722964
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    ||||||||||||||||||| ||||||||||||||| ||||  ||||||||||||||| |||  |||||||||||||||||| ||||||    
T  26722877 tgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcttacggatatatctttcctgcggaacctaaa 26722964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 194
Target Start/End: Original strand, 41862269 - 41862397
Alignment:
Q  66 aaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtattgcct 165  Q
    |||||||||||||| ||||  |||||| ||||||| |||||||  ||||||||| |  ||||| |||||||| ||||||||||||| || |||| | |||    
T  41862269 aaaaaatttatcgcaaaacaatacttcatttctgcggataattatacatttcctgcggatatacctttcctgtggatcctaaaatcctaaggtaatacct 41862368  T
Q  166 tacctgagaacctaaatccttggtaaaat 194  Q
     | |||||||||||||||||||| |||||    
T  41862369 catctgagaacctaaatccttggcaaaat 41862397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 131 - 230
Target Start/End: Complemental strand, 19377534 - 19377435
Alignment:
Q  131 tttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaa 230  Q
    ||||||||||||||||||||| || |||||| ||| ||||  | |||||||||||||| ||||| |||||||||||| |||||||| |||||| ||||||    
T  19377534 tttcctgcggatcctaaaatcctaaggtattacctcacctagggacctaaatccttggcaaaatctgcaggaaatgtatttccttcggaatttccacaaa 19377435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 310
Target Start/End: Complemental strand, 30852434 - 30852303
Alignment:
Q  179 aaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggacttactaca 278  Q
    ||||||| || ||||| || |||||||||||||||| | ||||||||| |||| ||  ||||||||||||||||||||  || || |||  |||||||||    
T  30852434 aaatcctaggcaaaatctgaaggaaatgtgtttcctgcggaatttacataaaattccgcaggaaaagttaaaagttctagtaatggctgagcttactaca 30852335  T
Q  279 aggaaagttagaactgagcctggattagtgcc 310  Q
    | |||| || || ||||||||||  |||||||    
T  30852334 aagaaaattggagctgagcctgggctagtgcc 30852303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 41759626 - 41759687
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
    |||||||||||||||| ||||| ||||||||||||||||||| | |||||||||| ||||||    
T  41759626 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacaccaaaatc 41759687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 23704444 - 23704495
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||||||||||||||||||  |||||||||||||||||| ||||||    
T  23704444 ctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaa 23704495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 23704487 - 23704554
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacagg 240  Q
    |||||||||||||||| ||||| |||||||||||||||| |  | ||||||||||||||||| |||||    
T  23704487 gaacctaaatccttggcaaaatctgcaggaaatgtgttttcggcggaatttacacaaaaatccacagg 23704554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 28693921 - 28693979
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||| ||||||| |||| |||||||||||||||  |||||||||||||||||    
T  28693921 tgggcaaaaaaattatcgcaaaactttacttcctttctgcgaataatttcacatttcct 28693979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 38991181 - 38991255
Alignment:
Q  176 cctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaa 250  Q
    ||||||||||||| ||||| ||||||||||||||||||  | ||||||| |||||||||  ||||||||| ||||    
T  38991181 cctaaatccttggcaaaatctgcaggaaatgtgtttccaacggaatttatacaaaaatccgcaggaaaagctaaa 38991255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 26722956 - 26723017
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
    |||||||||||||||  ||||| ||||||||||||||||||| | ||||||||| |||||||    
T  26722956 gaacctaaatccttgacaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaatc 26723017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 35300403 - 35300454
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||| ||||||||||||||  |||||||||||||||||| ||||||    
T  35300403 ctgcagataaattcacatttcctacggatatatctttcctgcggaacctaaa 35300454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 35300446 - 35300507
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
    |||||||||||||||| ||||| ||||||||||   |||||| | |||||||||||||||||    
T  35300446 gaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaaaatc 35300507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 41759545 - 41759596
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcac 112  Q
    |||||||||||||||||||  |||||||||||||| ||||  ||||||||||    
T  41759545 tgggcaaaaaatttatcgcacaacgttacttccttcctgcgaataatttcac 41759596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 7873138 - 7873196
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||| ||||||| ||| ||||||||||| | ||  |||||||||||||||||    
T  7873138 tgggcaaaaaaattatcgcaaaatgttacttccttcccgctaataatttcacatttcct 7873196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 21932660 - 21932718
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| ||| |||||||| || ||||  ||||||||| |||||||    
T  21932660 tgggcaaaaaatttatcgcaaaatgttacttctttcctgcgaataatttcatatttcct 21932718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 22206604 - 22206662
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||| ||| ||||||| ||| ||||||||||| ||||  |||||||||||||||||    
T  22206604 tgggcaagaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttcct 22206662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 22228135 - 22228077
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||| ||| ||||||| ||| ||||||||||| ||||  |||||||||||||||||    
T  22228135 tgggcaagaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttcct 22228077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 7873232 - 7873285
Alignment:
Q  179 aaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaa 232  Q
    ||||||| || ||||| ||||||||||||||||||| | ||||||||| |||||    
T  7873232 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaa 7873285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 5991338 - 5991394
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttc 117  Q
    ||||||||||| ||||||| ||| ||||||||||| ||||  ||||||| |||||||    
T  5991338 tgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataattttacatttc 5991394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 94 - 299
Target Start/End: Original strand, 33179064 - 33179268
Alignment:
Q  94 tttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaa 193  Q
    ||||||||||||||||||||||| || |  |||||||||||||||| ||||||||||| ||||||||| ||| ||||| |||||||||||||||| ||||    
T  33179064 tttctgcagataatttcacattttctgcggatatatctttcctgcg-atcctaaaatcctatggtattacctcacctgggaacctaaatccttggcaaaa 33179162  T
Q  194 tatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggacttactacaaggaaagttagaact 293  Q
    | ||||||||||||||||||| | ||||||||||||||||   ||||||||| ||||||||||  || || |||||||| ||||||  |||||| || ||    
T  33179163 tctgcaggaaatgtgtttcctgcggaatttacacaaaaattcgcaggaaaagctaaaagttctagtaatggctggacttgctacaaaaaaagttggagct 33179262  T
Q  294 gagcct 299  Q
    ||||||    
T  33179263 gagcct 33179268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 63 - 233
Target Start/End: Original strand, 41218275 - 41218449
Alignment:
Q  63 ggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacata----tatctttcctgcggatcctaaaatcttatggt 158  Q
    ||||||||||||||||| ||||||||||||||| ||||  ||||||||||||||||| || |||    ||  ||||||||||||||||||||| || |||    
T  41218275 ggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcagataattttacatttcctgcggatcctaaaatcctaaggt 41218374  T
Q  159 attgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaat 233  Q
    ||| ||| || ||||||||||||| ||||| |||||  |||||||||||||||||| | ||||||| ||||||||    
T  41218375 attacctcacatgagaacctaaattcttggcaaaatcggcaggaaatgtgtttcctgcggaatttagacaaaaat 41218449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 287
Target Start/End: Complemental strand, 53068415 - 53068231
Alignment:
Q  103 ataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcagga 202  Q
    |||||||||||||| || |  |||||| ||| ||||| ||||||||||| || ||||||  || ||||  |||||||||| ||||| ||||| |||||||    
T  53068415 ataatttcacattttctgcggatatatttttactgcgaatcctaaaatcctaaggtattatctcacctaggaacctaaattcttggcaaaatctgcagga 53068316  T
Q  203 aatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggacttactacaaggaaagtt 287  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||| ||||  || || ||||||||  ||||| |||||||    
T  53068315 aatgtgtttcctgtggaatttacacaaaaatccgcaggaaaagttaaaacttctagtaatggctggacttgttacaaagaaagtt 53068231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 26370960 - 26371047
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    ||||||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||  |||||||||||||||||| ||||||    
T  26370960 tgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatctttcctgcggaacctaaa 26371047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 37516824 - 37516739
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatccta 146  Q
    ||||||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||  |||||||||||||||||| ||||    
T  37516824 tgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatctttcctgcggaaccta 37516739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 25391763 - 25391850
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    ||||||||||||||||||| |||| ||||||||||  | |  |||||||||||||||||||  |||||||||||||||||| ||||||    
T  25391763 tgggcaaaaaatttatcgcaaaacattacttccttcttacgaataatttcacatttcctacggatatatctttcctgcggaacctaaa 25391850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 26371039 - 26371100
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
    |||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||    
T  26371039 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatc 26371100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 301
Target Start/End: Complemental strand, 53652002 - 53651873
Alignment:
Q  172 agaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggact 271  Q
    ||||||||||||||||| ||||| |||||||||||  |||||| | |||||||||||||||||  ||||||||| ||||| ||||  || ||   || ||    
T  53652002 agaacctaaatccttggcaaaatctgcaggaaatgcatttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggtagggct 53651903  T
Q  272 tactacaaggaaagttagaactgagcctgg 301  Q
    | |||||| ||||||| || ||||||||||    
T  53651902 tgctacaaagaaagttggagctgagcctgg 53651873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 41358590 - 41358670
Alignment:
Q  131 tttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgttt 211  Q
    |||||||||||||| |||||| || |||||| ||| ||||||||||||||||| |||| |||||  |||||||||||||||    
T  41358590 tttcctgcggatccaaaaatcctaaggtattacctcacctgagaacctaaatcattggcaaaatccgcaggaaatgtgttt 41358670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 37516745 - 37516687
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaa 231  Q
    ||||||| |||||||| ||||| ||||||||||||||||||| ||||||||||||||||    
T  37516745 gaacctagatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaaa 37516687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 53987961 - 53987884
Alignment:
Q  179 aaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttct 256  Q
    ||||||| || ||||| ||||||||||||||||||| | ||||||||| |||||||  ||||||||| ||||||||||    
T  53987961 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaatccgcaggaaaagctaaaagttct 53987884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 301
Target Start/End: Complemental strand, 44047687 - 44047559
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggactt 272  Q
    |||||||||||||||| ||||| ||||||||||   |||||| | |||||||||||||||||  ||||||||| ||||| ||||  || ||   || |||    
T  44047687 gaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggtagggctt 44047588  T
Q  273 actacaaggaaagttagaactgagcctgg 301  Q
     |||||| ||||||| || ||||||||||    
T  44047587 gctacaaagaaagttggagctgagcctgg 44047559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 7501102 - 7501051
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||||||||||||||||||  |||||||||||||||||| ||||||    
T  7501102 ctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaa 7501051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 44625773 - 44625718
Alignment:
Q  201 gaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttct 256  Q
    |||||||||||||| |||||||||||||||||||| ||||||||| ||||| ||||    
T  44625773 gaaatgtgtttcctccagaatttacacaaaaatctgcaggaaaagctaaaaattct 44625718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 9600436 - 9600370
Alignment:
Q  190 aaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttct 256  Q
    ||||| ||||||||||||||||||| ||||||||||| |||||||  |||||||||  |||||||||    
T  9600436 aaaatctgcaggaaatgtgtttcctgcagaatttacataaaaatccgcaggaaaagccaaaagttct 9600370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 7501059 - 7501002
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaa 230  Q
    |||||||||||||||| ||||| || |||||||||||||||| | |||||||||||||    
T  7501059 gaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcggaatttacacaaa 7501002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 38239555 - 38239495
Alignment:
Q  174 aacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
    ||||||||||||||| |||||  |||| ||||||||||||| |||||||||||| ||||||    
T  38239555 aacctaaatccttggcaaaatccgcagaaaatgtgtttcctgcagaatttacactaaaatc 38239495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 14461168 - 14461085
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttct 256  Q
    |||||||||||||||| ||||| ||||||| ||   |||||| | ||||||||| |||||||  ||||||||||||||| ||||    
T  14461168 gaacctaaatccttggcaaaatctgcaggacatacatttcctgcggaatttacataaaaatccgcaggaaaagttaaaaattct 14461085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 14461211 - 14461160
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||| ||||||||||||||  |||||||||||||||||| ||||||    
T  14461211 ctgcagataaattcacatttcctacggatatatctttcctgcggaacctaaa 14461160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 43700168 - 43700219
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||||||||||||||| ||  |||||||||||||||||| ||||||    
T  43700168 ctgcagataatttcacatttccaacggatatatctttcctgcggaacctaaa 43700219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 28311480 - 28311422
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| |||| |||||||||| || |  |||||||||||||||||    
T  28311480 tgggcaaaaaatttatcgcaaaacattacttccttcctacgaataatttcacatttcct 28311422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 43700111 - 43700169
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    |||| ||||||| |||||| |||||||||||| |||||||  |||||||||||||||||    
T  43700111 tgggtaaaaaatatatcgcaaaacgttacttcttttctgcgaataatttcacatttcct 43700169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 44047783 - 44047729
Alignment:
Q  65 caaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||| |||||||||||| || || || |||||||||||||||||    
T  44047783 caaaaaatttatcgcaaaacgttacttctttcctacaaataatttcacatttcct 44047729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 7501154 - 7501101
Alignment:
Q  66 aaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    |||||||||||||| ||||||||||| ||| ||||  |||||||||||||||||    
T  7501154 aaaaaatttatcgcaaaacgttacttacttcctgcgaataatttcacatttcct 7501101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 47511686 - 47511734
Alignment:
Q  197 gcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaag 245  Q
    ||||||||||||||||||||| |||||| |||||||||  |||||||||    
T  47511686 gcaggaaatgtgtttccttcaaaatttatacaaaaatccgcaggaaaag 47511734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 12909970 - 12909923
Alignment:
Q  101 agataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||| ||||||||||||||  |||||||||||||||||| ||||||    
T  12909970 agataaattcacatttcctacggatatatctttcctgcggaacctaaa 12909923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 25391842 - 25391925
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttct 256  Q
    |||||||||||||||| ||||| |||| |||||   |||| | | |||||||||||||||||  ||||||||| ||||| ||||    
T  25391842 gaacctaaatccttggcaaaatttgcaagaaatacatttcttgcggaatttacacaaaaatccgcaggaaaagctaaaaattct 25391925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 26278460 - 26278405
Alignment:
Q  179 aaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
    ||||||| || ||||| ||||||||||||||||||| | ||||||||| |||||||    
T  26278460 aaatcctaggcaaaatctgcaggaaatgtgtttcctccggaatttacataaaaatc 26278405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 28311380 - 28311309
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaa 244  Q
    |||||||||||||||| ||||| | ||||||||   |||||| | |||||||||||||||||  ||||||||    
T  28311380 gaacctaaatccttggcaaaatctacaggaaatacatttcctgcggaatttacacaaaaatccgcaggaaaa 28311309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 28311423 - 28311372
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||| ||||||||||||||  |||||||||||| ||||| ||||||    
T  28311423 ctgcagataaattcacatttcctacggatatatctttccagcggaacctaaa 28311372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 44047730 - 44047679
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||| ||||||||||||||  ||||||||||| |||||| ||||||    
T  44047730 ctgcagataaattcacatttcctacggatatatctttcttgcggaacctaaa 44047679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 53652044 - 53651993
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||| ||||||||||||||  ||||||||||||||| || ||||||    
T  53652044 ctgcagataaattcacatttcctacggatatatctttcctgcagaacctaaa 53651993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 14461268 - 14461210
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||| | ||||||||||||||| || |  ||||||| |||||||||    
T  14461268 tgggcaaaaaatttatcacaaaacgttacttccttcctacgaataattttacatttcct 14461210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 35077321 - 35077267
Alignment:
Q  179 aaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaat 233  Q
    ||||||| || ||||| ||||||||||||||||||| | ||||||||| ||||||    
T  35077321 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaat 35077267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 53988029 - 53987976
Alignment:
Q  66 aaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||| || ||| ||||||||||| ||||  |||||||||||||||||    
T  53988029 aaaaaatttattgcaaaatgttacttccttcctgcgaataatttcacatttcct 53987976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 97 - 256
Target Start/End: Complemental strand, 15504089 - 15503930
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatat 196  Q
    ||||||||||||||||||||||| |  |||||||||||| ||||||||||||||| ||||||||| ||| | ||| |||||||||||||||| ||||| |    
T  15504089 ctgcagataatttcacatttcctgcggatatatctttcccgcggatcctaaaatcctatggtattacctcatctgggaacctaaatccttggcaaaatct 15503990  T
Q  197 gcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttct 256  Q
    |||||||||||||||||| |||||||||||||||||||  ||||||||| ||||| ||||    
T  15503989 gcaggaaatgtgtttcctgcagaatttacacaaaaatccgcaggaaaagctaaaaattct 15503930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 61 - 233
Target Start/End: Complemental strand, 21069218 - 21069046
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtat 160  Q
    ||||||||||||||||||| |||||||| |||||| ||| | ||||||||||||||||| || |||||||||||||| ||||||||||||| ||||||||    
T  21069218 tgggcaaaaaatttatcgcaaaacgttatttccttcctggaaataatttcacatttcctgcagatatatctttcctgtggatcctaaaatcctatggtat 21069119  T
Q  161 tgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaat 233  Q
      ||| ||||  ||||||||||| |||| ||||| ||||||||||||||||| | | |||| |||||||||||    
T  21069118 aacctcacctaggaacctaaatctttggcaaaatctgcaggaaatgtgtttcttgcggaatatacacaaaaat 21069046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 65 - 301
Target Start/End: Original strand, 36234477 - 36234717
Alignment:
Q  65 caaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacata-tatc---tttcctgcggatcctaaaatcttatggtat 160  Q
    ||||||||||||||| ||| |||||||||||  |||  ||||||||||||||| | || ||| | ||   |||||||||||||||||||| |||||||||    
T  36234477 caaaaaatttatcgcaaaatgttacttccttcttgcgaataatttcacatttcttgcagataatttcacatttcctgcggatcctaaaatgttatggtat 36234576  T
Q  161 tgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttata 260  Q
      ||| ||||  |||| |||| |||||||||||| ||||||||||| ||||||| | ||||||||| |||||||  || ||||||||||||||||| |||    
T  36234577 cacctcacctaggaacttaaacccttggtaaaatctgcaggaaatgcgtttcctgctgaatttacataaaaatccgcatgaaaagttaaaagttctaata 36234676  T
Q  261 ttgactggacttactacaaggaaagttagaactgagcctgg 301  Q
     || |||| ||| |||||| |||| || || ||||| ||||    
T  36234677 atggctgggcttgctacaaagaaaattggagctgagtctgg 36234717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 98 - 234
Target Start/End: Original strand, 17192601 - 17192737
Alignment:
Q  98 tgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatg 197  Q
    ||||||||||||||||||| || |  ||||||||||||||||||||||||||||  |||||||| ||| | ||| |||||||||||||||  ||||| ||    
T  17192601 tgcagataatttcacattttctgcgaatatatctttcctgcggatcctaaaatccaatggtattacctcatctgggaacctaaatccttgacaaaatctg 17192700  T
Q  198 caggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
    |||||||||| |||||| | ||||| |||||||||||    
T  17192701 caggaaatgtatttcctgcggaattgacacaaaaatc 17192737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 16667455 - 16667561
Alignment:
Q  128 atctttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacac 227  Q
    ||||||| |||||||||||||||| ||||||||| ||| || || |||||||||||||||| ||||| ||||||||||||||||||| | ||||||||||    
T  16667455 atctttcttgcggatcctaaaatcctatggtattacctcacatgggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacac 16667554  T
Q  228 aaaaatc 234  Q
    |||||||    
T  16667555 aaaaatc 16667561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 33007083 - 33006996
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    ||||||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||  |||||||||||||||||| ||||||    
T  33007083 tgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatctttcctgcggaacctaaa 33006996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 61 - 208
Target Start/End: Original strand, 13942671 - 13942821
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatc---tttcctgcggatcctaaaatcttatgg 157  Q
    |||| |||||| ||||||| ||||||||||||||| ||||  |||||||||||||||||    |||  ||   ||||||||||||||||||||| || ||    
T  13942671 tgggtaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgtggataattcacatttcctgcggatcctaaaatcctaagg 13942770  T
Q  158 tattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtg 208  Q
    |||| ||| |||||| || |||||||||||| ||||| |||||||||||||    
T  13942771 tattacctcacctgataatctaaatccttggcaaaatctgcaggaaatgtg 13942821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 234
Target Start/End: Original strand, 12267301 - 12267477
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatc---tttcctgcggatcctaaaatcttatgg 157  Q
    |||||||||| |||||||| ||||||||||||||| |||   |||||||||||||| || |  |||  ||   ||||||||||||||||||||| |||||    
T  12267301 tgggcaaaaagtttatcgcaaaacgttacttccttcctgtgaataatttcacattttctgcggataattcacatttcctgcggatcctaaaatcctatgg 12267400  T
Q  158 tattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
    |||| ||| ||||  ||| |||||| | ||| ||||| | ||||||||||||||| | | ||||||||| |||||||    
T  12267401 tattacctcacctacgaatctaaattcgtggcaaaatctacaggaaatgtgtttcttgcggaatttacataaaaatc 12267477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 34846539 - 34846456
Alignment:
Q  65 caaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    ||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||  ||||||||||| |||||| ||||||    
T  34846539 caaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatctttcatgcggaacctaaa 34846456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 767505 - 767318
Alignment:
Q  50 tttataaaatatgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacata-tatc---tttcctgcggatcct 145  Q
    ||||||||||||| | ||||||||||| || ||||||||||| ||| ||||  |||||||| ||||| || |  ||| | ||   |||||||| ||||||    
T  767505 tttataaaatatgag-aaaaaatttattgcaaaacgttactttcttcctgcgaataatttctcattttctgcggataatttcacatttcctgcagatcct 767407  T
Q  146 aaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
    |||||| || |||||| ||| ||||| ||| |||||||||||| ||||  || |||||||||||||||| | ||||||| |||||||||    
T  767406 aaaatcctaaggtattacctcacctgggaatctaaatccttggcaaaacctgtaggaaatgtgtttcctgcggaatttatacaaaaatc 767318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 30249062 - 30248979
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttct 256  Q
    |||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||  ||| ||||| ||||| ||||    
T  30249062 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagaaaaagctaaaaattct 30248979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 33007004 - 33006943
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
    |||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||    
T  33007004 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctacggaatttacacaaaaatc 33006943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 35469000 - 35468939
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
    |||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||    
T  35469000 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatc 35468939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 8214621 - 8214701
Alignment:
Q  124 atatatctttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcaggaaa 204  Q
    |||||||||||||||||||||||||||| ||  ||||| ||| |||| ||||||||||||||||  ||||| |||||||||    
T  8214621 atatatctttcctgcggatcctaaaatcctaaagtattacctcacctaagaacctaaatccttgacaaaatctgcaggaaa 8214701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 15675510 - 15675452
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||    
T  15675510 tgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 15675452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 30249108 - 30249054
Alignment:
Q  94 tttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||| ||||||    
T  30249108 tttctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaa 30249054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 2476562 - 2476504
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| ||||||||||||||| || |  |||||||||||||||||    
T  2476562 tgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 2476504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 7162002 - 7162060
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||| ||||||| ||| ||||||||||| ||||| |||||||||||||||||    
T  7162002 tgggcaaaaaaattatcgcaaaatgttacttccttcctgcaaataatttcacatttcct 7162060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 14832729 - 14832787
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| |||| |||||||||| ||||  |||||||||||||||||    
T  14832729 tgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcct 14832787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 15675410 - 15675352
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaa 231  Q
    |||| ||||||||||| ||||| ||||||||||||||||||| | ||||||||||||||    
T  15675410 gaacttaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaa 15675352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 35469100 - 35469042
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| ||| ||||||||||| ||||  |||||||||||||||||    
T  35469100 tgggcaaaaaatttatcgcaaaatgttacttccttcctgcgaataatttcacatttcct 35469042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 34846464 - 34846403
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
    |||||||||||||||| ||||| || ||||||||||||| || | |||||||||||||||||    
T  34846464 gaacctaaatccttggcaaaatctgtaggaaatgtgtttactgcggaatttacacaaaaatc 34846403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 14832786 - 14832830
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcgga 141  Q
    |||||||||||||||||||||||||  ||||||||||||||||||    
T  14832786 ctgcagataatttcacatttcctacggatatatctttcctgcgga 14832830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 2476505 - 2476454
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||| ||||||||||||||  |||||||||||||||||| ||||||    
T  2476505 ctgcagataaattcacatttcctacggatatatctttcctgcggaacctaaa 2476454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 6900907 - 6900800
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatat 196  Q
    |||| |||||||||||||||| | |  |||||||||||| ||||||||||||||| ||   ||||  || | ||| |||||||||||||||  ||||| |    
T  6900907 ctgcggataatttcacatttcttgcggatatatctttcccgcggatcctaaaatcctaaaatattatctaatctgggaacctaaatccttgacaaaatct 6900808  T
Q  197 gcaggaaa 204  Q
    ||||||||    
T  6900807 gcaggaaa 6900800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 30249162 - 30249107
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacattt 116  Q
    ||||||||||||||||||| ||||||| ||| ||| ||||| ||||||||||||||    
T  30249162 tgggcaaaaaatttatcgcaaaacgttgctttcttcctgcaaataatttcacattt 30249107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 34444106 - 34444055
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||| ||||||||||||||  |||||||||||||||||| ||||||    
T  34444106 ctgcagataaattcacatttcctacggatatatctttcctgcggaacctaaa 34444055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 35469043 - 35468992
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||||||||||||| ||||  |||||||||||||||||| ||||||    
T  35469043 ctgcagataatttcacattttctacggatatatctttcctgcggaacctaaa 35468992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 151
Target Start/End: Original strand, 39605784 - 39605850
Alignment:
Q  85 gttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatc 151  Q
    |||||||| ||  ||| ||||||| |||||||||| |  ||||||||||||||||||||||||||||    
T  39605784 gttacttcattcatgcggataattgcacatttcctgcggatatatctttcctgcggatcctaaaatc 39605850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 34444063 - 34443991
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaag 245  Q
    |||||||||||||||| ||||| |||||||||||  |||| | | ||||||| |||||||||  |||||||||    
T  34444063 gaacctaaatccttggcaaaatctgcaggaaatgcatttcttgcggaatttagacaaaaatccgcaggaaaag 34443991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 1672405 - 1672460
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacattt 116  Q
    ||||||||||| ||||||| ||| ||||||||||| ||||  ||||||||||||||    
T  1672405 tgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattt 1672460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 16567988 - 16567930
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||| ||||||| ||| ||||||||||| |||   |||||||||||||||||    
T  16567988 tgggcaaaaaaattatcgcaaaatgttacttccttcctgggaataatttcacatttcct 16567930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 32953680 - 32953734
Alignment:
Q  179 aaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaat 233  Q
    ||||||| || ||||| ||||||||||||||||||| | ||||||||| ||||||    
T  32953680 aaatcctaggcaaaatctgcaggaaatgtgtttcctacggaatttacataaaaat 32953734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 37552111 - 37552053
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||| |||| || ||| ||||||||||| ||||  |||||||||||||||||    
T  37552111 tgggcaaaaaaattattgcaaaatgttacttccttcctgcgaataatttcacatttcct 37552053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 37654941 - 37654883
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||| |||| || ||| ||||||||||| ||||  |||||||||||||||||    
T  37654941 tgggcaaaaaaattattgcaaaatgttacttccttcctgcgaataatttcacatttcct 37654883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 6900959 - 6900906
Alignment:
Q  66 aaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    |||||||||||||| ||| |||||||||||  |||  |||||||||||||||||    
T  6900959 aaaaaatttatcgcaaaatgttacttccttcatgcgaataatttcacatttcct 6900906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 34444158 - 34444105
Alignment:
Q  66 aaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    |||||| ||||||| ||||||||||||||| || |  |||||||||||||||||    
T  34444158 aaaaaaattatcgcaaaacgttacttccttcctacgaataatttcacatttcct 34444105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 15675449 - 15675409
Alignment:
Q  101 agataatttcacatttcctacacatatatctttcctgcgga 141  Q
    ||||||||||||||||||| |  ||||||||||||||||||    
T  15675449 agataatttcacatttccttcggatatatctttcctgcgga 15675409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 42989607 - 42989571
Alignment:
Q  197 gcaggaaatgtgtttccttcagaatttacacaaaaat 233  Q
    |||||||||||||||||| | ||||||||||||||||    
T  42989607 gcaggaaatgtgtttcctgcggaatttacacaaaaat 42989571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 61 - 214
Target Start/End: Complemental strand, 34459318 - 34459165
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtat 160  Q
    ||||||||||||||||| | ||||||||||||||| |  |  |||||||||||||||||||| ||||||||||| |||||||||||||||| || |||||    
T  34459318 tgggcaaaaaatttatcacaaaacgttacttccttcccacgaataatttcacatttcctacagatatatctttcttgcggatcctaaaatcctaaggtat 34459219  T
Q  161 tgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttcct 214  Q
    | ||| |||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  34459218 tacctcacctgagaacttaaatccttggcaaaatctgcaggaaatgtgtttcct 34459165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 50 - 301
Target Start/End: Complemental strand, 9527265 - 9527014
Alignment:
Q  50 tttataaaatatgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaa 149  Q
    |||||| | ||||||||||||||||||||| ||||||||||  ||| ||||  ||||||||||||||||||   |||||||||||  | |||||||||||    
T  9527265 tttatagagtatgggcaaaaaatttatcgcaaaacgttactgtcttcctgcgaataatttcacatttcctatggatatatctttctggaggatcctaaaa 9527166  T
Q  150 tcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaa 249  Q
    || || | |||| ||| ||||| |||||||||||||||| ||||| ||||||| |||||||||||    ||||||||| ||||||  ||||||||| |||    
T  9527165 tcctaagatattacctcacctgggaacctaaatccttggcaaaatctgcaggagatgtgtttcctgtgaaatttacaccaaaatccgcaggaaaagctaa 9527066  T
Q  250 aagttcttatattgactggacttactacaaggaaagttagaactgagcctgg 301  Q
    |||||||  || || |||| ||| |||||| ||||||| || ||| ||||||    
T  9527065 aagttctagtaatggctgggcttgctacaaagaaagttggagctgggcctgg 9527014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 65 - 245
Target Start/End: Original strand, 6802006 - 6802190
Alignment:
Q  65 caaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtattgcc 164  Q
    ||||||||||||||| |||||||| |||||   ||| ||||||| |||||||||| || ||||| |||||||| ||||||||||||| || |||||| ||    
T  6802006 caaaaaatttatcgcaaaacgttatttcctacatgcggataattgcacatttcctgcagatatacctttcctgaggatcctaaaatcgtaaggtattacc 6802105  T
Q  165 ttacctgagaacctaaatccttggtaaaat----atgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaag 245  Q
    | ||||| |||||||||||||||| |||||    | ||||||||||||||||||   ||||||||| |||||||  |||||||||    
T  6802106 tcacctgggaacctaaatccttggcaaaatccgcaggcaggaaatgtgtttcctgtggaatttacagaaaaatccgcaggaaaag 6802190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 97 - 310
Target Start/End: Original strand, 4642012 - 4642225
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatat 196  Q
    |||| |||||||||| ||||||| |  |||||||||||||||||||||||||||| || |||||| ||| ||||   ||||||||||||||  ||||| |    
T  4642012 ctgcggataatttcatatttcctgcggatatatctttcctgcggatcctaaaatcctaaggtattacctcacctcgaaacctaaatccttgacaaaatct 4642111  T
Q  197 gcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggacttactacaaggaaagttagaactgag 296  Q
    ||| ||||||| ||||||    |||||||| |||||||  ||||||||| ||||||||||  || || ||| |||| |||||| ||||||  || |||||    
T  4642112 gcaagaaatgtatttcctgtgaaatttacataaaaatccgcaggaaaagctaaaagttctagtaatggctgaacttgctacaaagaaagtcggagctgag 4642211  T
Q  297 cctggattagtgcc 310  Q
    |||||| |||||||    
T  4642212 cctggactagtgcc 4642225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 131 - 256
Target Start/End: Complemental strand, 24646192 - 24646067
Alignment:
Q  131 tttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaa 230  Q
    |||||||||||||| ||||||  | |||||| ||| ||||| |||||||||||||||| ||||| ||||||||||||||||||| | |||| ||||||||    
T  24646192 tttcctgcggatccaaaaatccaaaggtattacctcacctgggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctacggaatgtacacaaa 24646093  T
Q  231 aatctacaggaaaagttaaaagttct 256  Q
    |||| |||||||||| ||||||||||    
T  24646092 aatccacaggaaaagctaaaagttct 24646067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 33468889 - 33468976
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    ||||||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||| |||||||||||||||||| ||||||    
T  33468889 tgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacagatatatctttcctgcggaacctaaa 33468976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 61 - 204
Target Start/End: Complemental strand, 49898585 - 49898442
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtat 160  Q
    ||||||||||||||||||| ||| ||||| ||||| ||||  |||||||||||||||||    ||||||||||| |||||||||||||||| || |||||    
T  49898585 tgggcaaaaaatttatcgcaaaatgttacgtccttcctgcgaataatttcacatttcctgtggatatatctttcttgcggatcctaaaatcctaaggtat 49898486  T
Q  161 tgccttacctgagaacctaaatccttggtaaaatatgcaggaaa 204  Q
    | ||| ||||  | |||||||||||||| ||||| |||||||||    
T  49898485 tacctcacctagggacctaaatccttggcaaaatctgcaggaaa 49898442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 131 - 232
Target Start/End: Complemental strand, 24745551 - 24745450
Alignment:
Q  131 tttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaa 230  Q
    ||||||||||||||||||||| || |||||| ||| |||| | ||||||||||||||| ||||| ||||| ||||||||||||| |||||||||||||||    
T  24745551 tttcctgcggatcctaaaatcctagggtattacctcaccttaaaacctaaatccttggcaaaatctgcagaaaatgtgtttcctgcagaatttacacaaa 24745452  T
Q  231 aa 232  Q
    ||    
T  24745451 aa 24745450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 6331859 - 6331775
Alignment:
Q  64 gcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||||||||| ||||||||||||||| || || |||||||||||||||||||  |||||||||||||||||| ||||||    
T  6331859 gcaaaaaatttatcgcaaaacgttacttccttccttcaaataatttcacatttcctacggatatatctttcctgcggaacctaaa 6331775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 173 - 301
Target Start/End: Complemental strand, 27460793 - 27460665
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggactt 272  Q
    |||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||  || |||||| ||||| ||||  || ||  ||| |||    
T  27460793 gaacctaaatccttggcaaaatctgcaggaaatgtgtttccttcggaatttacacaaaaatccgcaagaaaagctaaaaattctagtaatggttgggctt 27460694  T
Q  273 actacaaggaaagttagaactgagcctgg 301  Q
     |||||| ||||||| || ||||||||||    
T  27460693 gctacaaagaaagttggagctgagcctgg 27460665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 31844559 - 31844646
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    ||||||||||||||||||| ||| ||||||||||| ||||  |||||||||||||||||||  |||||||||||||||||| ||||||    
T  31844559 tgggcaaaaaatttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctacggatatatctttcctgcggaacctaaa 31844646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 301
Target Start/End: Original strand, 25011554 - 25011682
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggactt 272  Q
    |||||||||||||||| ||||| ||||| ||||||||||||| | |||||||||||||||||  ||||||||| ||||| ||||  || ||  ||| |||    
T  25011554 gaacctaaatccttggcaaaatctgcagaaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggttgggctt 25011653  T
Q  273 actacaaggaaagttagaactgagcctgg 301  Q
     |||||| ||||||| || ||||||||||    
T  25011654 gctacaaagaaagttggagctgagcctgg 25011682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 27584031 - 27584114
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttct 256  Q
    |||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||  ||||||||| ||||| ||||    
T  27584031 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattct 27584114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 8239467 - 8239382
Alignment:
Q  63 ggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    ||||||||||||||||| ||||||||||||||| ||    |||||||||||||||||||  |||||||||||||||||| ||||||    
T  8239467 ggcaaaaaatttatcgcaaaacgttacttccttcctatgaataatttcacatttcctacggatatatctttcctgcggaacctaaa 8239382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 31844638 - 31844705
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacagg 240  Q
    |||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||| ||||    
T  31844638 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatctgcagg 31844705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 14727470 - 14727419
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  14727470 ctgcagataatttcacatttcctacagatatatctttcctgcggaacctaaa 14727419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 14727427 - 14727369
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaa 231  Q
    |||||||||||||||| ||||| ||||||||||||||||||| | ||||||||||||||    
T  14727427 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaa 14727369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 310
Target Start/End: Original strand, 44238876 - 44239014
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttac-acaaaaatctacaggaaaagttaaaagttcttatattgactggact 271  Q
    |||||||||||||||| ||||| | || |||||||||||||| |||||||||| | |||||||  || |||||| ||||| ||||  || || |||| ||    
T  44238876 gaacctaaatccttggcaaaatctacaagaaatgtgtttcctgcagaatttacaaaaaaaatccgcaagaaaagctaaaatttctagtaatggctgggct 44238975  T
Q  272 tactacaaggaaagttagaactgagcctggattagtgcc 310  Q
    | |||||| ||||||| || ||||||||||  |||||||    
T  44238976 ttctacaaagaaagttggagctgagcctgggctagtgcc 44239014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 6331783 - 6331722
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
    |||||||||||||||| ||||| || |||||||||||||||| | |||||||||||||||||    
T  6331783 gaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcggaatttacacaaaaatc 6331722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 37154008 - 37154091
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttct 256  Q
    |||||||||||||||| ||||| ||||||||||   |||||| | |||||||||||||||||  ||||||||| ||||| ||||    
T  37154008 gaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattct 37154091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 44305509 - 44305426
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttct 256  Q
    |||||||||||||||| ||||| ||||||||||   |||||| | |||||||||||||||||  ||||||||| ||||| ||||    
T  44305509 gaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattct 44305426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 14727527 - 14727469
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||| ||||||| ||||||||||||||| ||||  |||||||||||||||||    
T  14727527 tgggcaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 14727469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 25007661 - 25007603
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| ||||||||||||||| || |  |||||||||||||||||    
T  25007661 tgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 25007603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 37153908 - 37153966
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| ||||||||||||||| || |  |||||||||||||||||    
T  37153908 tgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 37153966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 301
Target Start/End: Complemental strand, 25007562 - 25007433
Alignment:
Q  172 agaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggact 271  Q
    ||||||||||||||||| ||||| ||||||||||   |||| | | |||||||||||||||||  ||||||||| ||||| ||||  || ||   || ||    
T  25007562 agaacctaaatccttggcaaaatctgcaggaaatacatttcttgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggtagggct 25007463  T
Q  272 tactacaaggaaagttagaactgagcctgg 301  Q
    | |||||| ||||||| || ||||||||||    
T  25007462 tgctacaaagaaagttggagctgagcctgg 25007433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 48940419 - 48940495
Alignment:
Q  158 tattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
    |||| ||| |||||| || |||||||||||  ||||| |||| |||||||||||||| | |||||||||||||||||    
T  48940419 tattacctcacctgaaaagctaaatccttgacaaaatctgcatgaaatgtgtttcctgcggaatttacacaaaaatc 48940495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 27583988 - 27584039
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||||||||||||||||||  |||||||||||||| ||| ||||||    
T  27583988 ctgcagataatttcacatttcctacggatatatctttcctggggaacctaaa 27584039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 1428391 - 1428445
Alignment:
Q  94 tttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    ||||||||||||  ||||||||||||||  |||||||||||||||||| ||||||    
T  1428391 tttctgcagatagattcacatttcctacggatatatctttcctgcggaacctaaa 1428445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 25011509 - 25011562
Alignment:
Q  94 tttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||||| ||||||    
T  25011509 tttctgcagataatttcacatttcctacggatatatcttt-ctgcggaacctaaa 25011562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 44305609 - 44305551
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||| ||||||| ||||||||||||||| || |  |||||||||||||||||    
T  44305609 tgggcaaaaaaattatcgcaaaacgttacttccttcctacgaataatttcacatttcct 44305551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 27460871 - 27460818
Alignment:
Q  66 aaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    |||||||||||||| |||| |||||||||| ||||  |||||||||||||||||    
T  27460871 aaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcct 27460818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 4774081 - 4774021
Alignment:
Q  196 tgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttct 256  Q
    ||||||||||||||||||| | ||||||||| ||| |||  ||||||||| ||||||||||    
T  4774081 tgcaggaaatgtgtttcctgcggaatttacataaatatccgcaggaaaagctaaaagttct 4774021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 1428337 - 1428392
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacattt 116  Q
    ||||||||||||||| ||| ||||||||||||||| || |  ||||||||||||||    
T  1428337 tgggcaaaaaatttaccgcaaaacgttacttccttcctacgaataatttcacattt 1428392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 4641958 - 4642013
Alignment:
Q  64 gcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    |||||||||  ||||| ||||||||||||||| ||||  |||||||||||||||||    
T  4641958 gcaaaaaatcaatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 4642013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 25007604 - 25007553
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||| ||||||||||||||  ||||||||||||||| || ||||||    
T  25007604 ctgcagataaattcacatttcctacggatatatctttcctgcagaacctaaa 25007553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 37153965 - 37154016
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||| ||||||||||||||  |||||||||||||| ||| ||||||    
T  37153965 ctgcagataaattcacatttcctacggatatatctttcctgtggaacctaaa 37154016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 44305552 - 44305501
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||| ||||||||||||||  |||||||||||||| ||| ||||||    
T  44305552 ctgcagataaattcacatttcctacggatatatctttcctgtggaacctaaa 44305501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 25011444 - 25011489
Alignment:
Q  50 tttataaaatatgggcaaaaaatttatcgctaaacgttacttcctt 95  Q
    |||||| ||| ||||||||||| ||||||| |||||||||||||||    
T  25011444 tttatagaatctgggcaaaaaaattatcgcaaaacgttacttcctt 25011489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 33468968 - 33469009
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttcct 214  Q
    |||||||||||||||  ||||| |||||||||||||||||||    
T  33468968 gaacctaaatccttgacaaaatttgcaggaaatgtgtttcct 33469009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 4774169 - 4774113
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttc 117  Q
    ||||||||||| ||||||| ||| ||||||| ||| ||||  |||||||||||||||    
T  4774169 tgggcaaaaaaattatcgcaaaatgttactttcttcctgcgaataatttcacatttc 4774113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 8239390 - 8239327
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaa--atgtgtttccttcagaatttacacaaaaatc 234  Q
    |||||||||||||||| ||||| ||||||||  || | |||||| | |||||||||||||||||    
T  8239390 gaacctaaatccttggcaaaatctgcaggaaatatatatttcctgcggaatttacacaaaaatc 8239327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 61 - 302
Target Start/End: Complemental strand, 17148994 - 17148750
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatc----tttcctgcggatcctaaaatcttatg 156  Q
    ||||||||||||||||| | ||||||||||||||| ||||  ||||||||||||||||| || |||  ||    ||||||||||||||||||||| ||||    
T  17148994 tgggcaaaaaatttatctcaaaacgttacttccttcctgcgaataatttcacatttcctgcagataattccacatttcctgcggatcctaaaatcctatg 17148895  T
Q  157 gtattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttct 256  Q
    ||||| ||| ||||| |||||||||||||| | ||||| ||||||||||||||||||| | |||||||||||||||||  |||| |||  |||||||| |    
T  17148894 gtattccctcacctgggaacctaaatcctt-gcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggtaaacctaaaagttat 17148796  T
Q  257 tatattgactggacttactacaaggaaagttagaactgagcctgga 302  Q
      || || |||  ||| |||||| ||||||| || |||||||||||    
T  17148795 agtaatggctgagcttgctacaaagaaagttggagctgagcctgga 17148750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 61 - 240
Target Start/End: Complemental strand, 17249528 - 17249349
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtat 160  Q
    ||||||||| |||||| || ||||||||||| ||| ||||  ||||||||||||||||| |  ||||||||||  |||||||||||||||| || |||||    
T  17249528 tgggcaaaatatttatagcaaaacgttactttcttcctgcgaataatttcacatttcctgcggatatatctttaatgcggatcctaaaatcctaaggtat 17249429  T
Q  161 tgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacagg 240  Q
    | ||| |||||||||||||||||||||| ||||| | || ||||||||||||||   ||||||||||||||||| |||||    
T  17249428 tacctcacctgagaacctaaatccttggcaaaatctacaagaaatgtgtttcctgtggaatttacacaaaaatccacagg 17249349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 97 - 310
Target Start/End: Original strand, 304066 - 304277
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatat 196  Q
    ||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||| || ||| || || |||||||||||||||| ||||| |    
T  304066 ctgcagataatttcacatttcctgcggatatatctttcctgcggatcctaaaatcttatggtgttacctcacatgggaacctaaatccttggcaaaatct 304165  T
Q  197 gcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggacttactacaaggaaagttagaactgag 296  Q
    ||| |||||||||||||| |  |||||||||  || ||  ||||||||| ||||||||||  || || |||  ||| |||||| ||||||| || |||||    
T  304166 gcaagaaatgtgtttcctgcgaaatttacac--aactccgcaggaaaagctaaaagttctagtaatggctgagcttgctacaaagaaagttggagctgag 304263  T
Q  297 cctggattagtgcc 310  Q
    | |||  |||||||    
T  304264 cttgggctagtgcc 304277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 102 - 287
Target Start/End: Complemental strand, 12000692 - 12000506
Alignment:
Q  102 gataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcagg 201  Q
    |||||||||||||||||| |  |||||||||||||||||||||||||||| || |||||| ||| ||||  | ||||| |||||||| ||||| ||||||    
T  12000692 gataatttcacatttcctgcggatatatctttcctgcggatcctaaaatcctaaggtattacctcacctagggacctatatccttggcaaaatctgcagg 12000593  T
Q  202 aaatgtgtttccttcagaatttacacaaaa-atctacaggaaaagttaaaagttcttatattgactggacttactacaaggaaagtt 287  Q
    ||||||||||||| | |||||||||||||| |||  ||||||||| ||||| ||||  || || ||||||||  ||||| |||||||    
T  12000592 aaatgtgtttcctgcggaatttacacaaaacatccgcaggaaaagctaaaacttctactaatggctggacttgttacaaagaaagtt 12000506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 131 - 256
Target Start/End: Complemental strand, 41010615 - 41010490
Alignment:
Q  131 tttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaa 230  Q
    ||||||||||||||||||||||| ||||||| ||| || || |||||||||||||| ||||||| ||||||||||||||||||| ||||||||| |||||    
T  41010615 tttcctgcggatcctaaaatcttgtggtattacctcacatgggaacctaaatccttagtaaaatctgcaggaaatgtgtttcctgcagaatttatacaaa 41010516  T
Q  231 aatctacaggaaaagttaaaagttct 256  Q
    ||||  ||| ||||  ||||||||||    
T  41010515 aatccgcagaaaaaactaaaagttct 41010490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 243
Target Start/End: Complemental strand, 15651381 - 15651235
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatat 196  Q
    |||| ||||||||||||||||||    ||||||||||||| | |||||||||||| || || ||| ||| ||||  | |||||||||||||| ||||||     
T  15651381 ctgcggataatttcacatttcctggggatatatctttcctactgatcctaaaatcctaaggcattacctcacctagggacctaaatccttggcaaaatac 15651282  T
Q  197 gcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaa 243  Q
    |||||||||||||||||| | |||||||||||||| ||| |||||||    
T  15651281 gcaggaaatgtgtttcctgcggaatttacacaaaactctgcaggaaa 15651235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 131 - 287
Target Start/End: Original strand, 33909317 - 33909473
Alignment:
Q  131 tttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaa 230  Q
    ||||||| ||||||||||||| ||||||||| ||| ||||||||||||||||| |||| ||||| |||||||||||| | |||| |||||||| ||||||    
T  33909317 tttcctgtggatcctaaaatcctatggtattacctcacctgagaacctaaatctttggaaaaatctgcaggaaatgtttctcctgcagaattttcacaaa 33909416  T
Q  231 aatctacaggaaaagttaaaagttcttatattgactggacttactacaaggaaagtt 287  Q
    |||   ||||||||  ||||| ||||  || ||||||  ||| |||||| |||||||    
T  33909417 aattcgcaggaaaaactaaaaattctagtaatgactgagcttgctacaaagaaagtt 33909473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 66 - 184
Target Start/End: Original strand, 45444376 - 45444494
Alignment:
Q  66 aaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtattgcct 165  Q
    ||||||||||| || |||| |||||||||| ||||  |||||||||||||||||  | ||||||||||| ||| |||||||||||| ||||||||| |||    
T  45444376 aaaaaatttattgcaaaacattacttccttcctgcgaataatttcacatttcctgtagatatatctttcttgcagatcctaaaatcctatggtattacct 45444475  T
Q  166 tacctgagaacctaaatcc 184  Q
     ||||| ||||||||||||    
T  45444476 cacctgtgaacctaaatcc 45444494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 6799903 - 6799986
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttct 256  Q
    |||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||  ||||||||||||||| ||||    
T  6799903 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagttaaaaattct 6799986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 226
Target Start/End: Complemental strand, 25563075 - 25562980
Alignment:
Q  131 tttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttaca 226  Q
    ||||||| ||||||||||||| ||||||||| ||| ||||| |||||||||||||||| ||||| |||||||||||| |||||| | |||||||||    
T  25563075 tttcctgtggatcctaaaatcctatggtattacctcacctgggaacctaaatccttggcaaaatctgcaggaaatgtatttcctgcggaatttaca 25562980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 301
Target Start/End: Complemental strand, 13203865 - 13203737
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggactt 272  Q
    |||||||||||||||| ||||| ||||||||| ||||||||| | |||||||||||||||||  ||||||||| ||||| ||||  || ||  ||| |||    
T  13203865 gaacctaaatccttggcaaaatctgcaggaaacgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggttgggctt 13203766  T
Q  273 actacaaggaaagttagaactgagcctgg 301  Q
     |||||| ||||||| || ||||||||||    
T  13203765 gctacaaagaaagttggagctgagcctgg 13203737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 61 - 204
Target Start/End: Original strand, 16220946 - 16221089
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtat 160  Q
    ||||||||||| ||||||| |||||||| |||||||||||| |||||| ||||||| ||    ||||| ||||||||| |||||||||||| || |||||    
T  16220946 tgggcaaaaaaattatcgcaaaacgttatttcctttctgcatataattgcacattttctgtggatatacctttcctgcagatcctaaaatcctaaggtat 16221045  T
Q  161 tgccttacctgagaacctaaatccttggtaaaatatgcaggaaa 204  Q
    |  || ||||| |||| ||||||||| | |||||  ||||||||    
T  16221046 tatctcacctgggaacttaaatccttagcaaaatccgcaggaaa 16221089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 18299160 - 18299243
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttct 256  Q
    |||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||  || |||||||||||| ||||    
T  18299160 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaagaaaagttaaaaattct 18299243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 2476004 - 2475919
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatccta 146  Q
    ||||||||||| ||||||| ||||||||||||||| ||||  ||||||||||||||||| |  |||||||||||||||||| ||||    
T  2476004 tgggcaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcgaatatatctttcctgcggaaccta 2475919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 29257564 - 29257506
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  29257564 tgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcacatttcct 29257506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 22572643 - 22572726
Alignment:
Q  65 caaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    ||||||||||||||| ||||||||||| ||| ||||  ||||||||||||||||||   ||||||||||| |||||| ||||||    
T  22572643 caaaaaatttatcgcaaaacgttactttcttcctgcgaataatttcacatttcctatgaatatatctttcttgcggaacctaaa 22572726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 41114887 - 41114958
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaa 244  Q
    |||||||||||||||| ||||| ||||||||||||||||||| | |||||||||| ||||||  ||||||||    
T  41114887 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacgaaaatccgcaggaaaa 41114958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 18299049 - 18299118
Alignment:
Q  50 tttataaaatatgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    |||||||| | ||||||||||||||||||  ||||||||||||||| ||||  |||||||||||||||||    
T  18299049 tttataaagtttgggcaaaaaatttatcgtaaaacgttacttccttcctgcgaataatttcacatttcct 18299118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 22572718 - 22572795
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaa 250  Q
    |||||||||||||||| ||||| |||||||||||||||||||   ||||||||||||||||   ||||||||| ||||    
T  22572718 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctggggaatttacacaaaaattcgcaggaaaagctaaa 22572795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 173 - 298
Target Start/End: Complemental strand, 29257464 - 29257339
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggactt 272  Q
    |||| ||||| ||||| ||||| ||||||||||||||||||| |  ||||||||||||||||   |||||||| ||||| || | ||| ||| ||| |||    
T  29257464 gaacgtaaattcttggcaaaatctgcaggaaatgtgtttcctgcgaaatttacacaaaaatccgaaggaaaaggtaaaaattttaataatgattgggctt 29257365  T
Q  273 actacaaggaaagttagaactgagcc 298  Q
     |||||| ||||||| || |||||||    
T  29257364 tctacaaagaaagttggagctgagcc 29257339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 6799860 - 6799911
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||||||||||||||||||  |||||||||||||||||| ||||||    
T  6799860 ctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaa 6799911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 18299117 - 18299168
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||||||||||||||||||| ||||||||||| |||||| ||||||    
T  18299117 ctgcagataatttcacatttcctacagatatatctttcttgcggaacctaaa 18299168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 41010706 - 41010652
Alignment:
Q  65 caaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||    
T  41010706 caaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 41010652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 41114787 - 41114845
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| |||||||||||||||  |||  |||||||||||||||||    
T  41114787 tgggcaaaaaatttatcgcaaaacgttacttccttcatgcgaataatttcacatttcct 41114845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 25563159 - 25563112
Alignment:
Q  72 tttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    |||||||| ||||||||||||||||||||| ||||||||| |||||||    
T  25563159 tttatcgcaaaacgttacttcctttctgcaaataatttcatatttcct 25563112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 41114844 - 41114895
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||||||||||||||||||  ||||||||||| |||||| ||||||    
T  41114844 ctgcagataatttcacatttcctacggatatatctttcttgcggaacctaaa 41114895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 13203911 - 13203857
Alignment:
Q  94 tttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||| |||||||||||||||||||||||  |||| ||||||||||||| ||||||    
T  13203911 tttccgcagataatttcacatttcctacggatatctctttcctgcggaacctaaa 13203857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 34756897 - 34756831
Alignment:
Q  85 gttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatc 151  Q
    ||||||||||| |||| |||||||  ||||||||| |  ||||| ||||||||||||||||||||||    
T  34756897 gttacttccttcctgcggataattgtacatttcctgcggatatacctttcctgcggatcctaaaatc 34756831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 29257507 - 29257463
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcgga 141  Q
    |||||||||| ||||||||||||||  ||||||||||||||||||    
T  29257507 ctgcagataagttcacatttcctacggatatatctttcctgcgga 29257463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 34756797 - 34756722
Alignment:
Q  165 ttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacagg 240  Q
    ||||||| |||||||||||||||| |||||   ||||||| ||| ||||| | |||||||||| ||||||| ||||    
T  34756797 ttacctgggaacctaaatccttggcaaaatccacaggaaacgtgattcctacggaatttacaccaaaatctgcagg 34756722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 15429384 - 15429315
Alignment:
Q  85 gttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatctta 154  Q
    ||||||||||| |||| ||||||| |||||||||| |  ||||| |||||||| ||||  ||||||||||    
T  15429384 gttacttccttcctgccgataattgcacatttcctgcggatatacctttcctgtggatattaaaatctta 15429315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 310
Target Start/End: Complemental strand, 2475875 - 2475783
Alignment:
Q  218 gaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggacttactacaaggaaagttagaactgagcctggattagtgcc 310  Q
    |||||||||||||||||  || || ||| ||||||||||  || || |||| ||| |||||| ||||||| || ||||| ||||| |||||||    
T  2475875 gaatttacacaaaaatccgcaagacaagctaaaagttctagtaatggctgggcttcctacaaagaaagttggagctgagtctggactagtgcc 2475783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 13203962 - 13203910
Alignment:
Q  64 gcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacattt 116  Q
    |||||||||||||||| ||| ||||||||||| | ||  ||||||||||||||    
T  13203962 gcaaaaaatttatcgcaaaatgttacttccttccagcgaataatttcacattt 13203910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 131 - 310
Target Start/End: Original strand, 34282873 - 34283052
Alignment:
Q  131 tttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaa 230  Q
    ||||||||||||||||||||| ||||||||| ||| ||||  |||| ||||||||||| ||||| ||||||||||||||||||| |||||||||||| ||    
T  34282873 tttcctgcggatcctaaaatcctatggtattacctcacctcggaacttaaatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacactaa 34282972  T
Q  231 aatctacaggaaaagttaaaagttcttatattgactggacttactacaaggaaagttagaactgagcctggattagtgcc 310  Q
    ||||  || |||||| ||||||||||  || ||||||||||| |||||| ||||||| || ||||||||||  |||||||    
T  34282973 aatccgcaagaaaagctaaaagttctagtaatgactggacttgctacaaagaaagttggagctgagcctgggctagtgcc 34283052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 39431608 - 39431738
Alignment:
Q  101 agataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcag 200  Q
    ||||||||||||||||| | |  ||||||||||| ||||| ||| |||||| ||||||||| ||| ||||  ||||||||||| |||| ||||| ||||     
T  39431608 agataatttcacatttcatgcggatatatctttcttgcgggtccgaaaatcctatggtattacctcacctaggaacctaaatctttggcaaaatctgcac 39431707  T
Q  201 gaaatgtgtttccttcagaatttacacaaaa 231  Q
    |||||||||||||| | ||||||||||||||    
T  39431708 gaaatgtgtttcctacggaatttacacaaaa 39431738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 131 - 231
Target Start/End: Complemental strand, 13243233 - 13243133
Alignment:
Q  131 tttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaa 230  Q
    |||| |||||||||||||||| || |||||| ||| ||||| |||||||||||||||| ||||| | ||||||||||||||||| | |||||||||||||    
T  13243233 tttcttgcggatcctaaaatcctaaggtattacctcacctgggaacctaaatccttggcaaaatctacaggaaatgtgtttcctgcggaatttacacaaa 13243134  T
Q  231 a 231  Q
    |    
T  13243133 a 13243133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 24965209 - 24965122
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    ||||||||||||||||||| |||| |||||| ||||||||  ||||||||||||||||| || |||||||||||||||||| ||||||    
T  24965209 tgggcaaaaaatttatcgcaaaaccttactttctttctgcgaataatttcacatttcctgcaaatatatctttcctgcggaacctaaa 24965122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 173 - 301
Target Start/End: Complemental strand, 24965130 - 24965002
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggactt 272  Q
    ||||||||||||| || ||||| ||||||||||||||||||| | |||||||||||||||||  ||||||||| ||||| ||||  || ||  ||| |||    
T  24965130 gaacctaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattctagtaatggttgggctt 24965031  T
Q  273 actacaaggaaagttagaactgagcctgg 301  Q
     |||||| ||||||| || | ||||||||    
T  24965030 gctacaaagaaagttggagccgagcctgg 24965002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 28928203 - 28928149
Alignment:
Q  94 tttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  28928203 tttctgcagataatttcacatttcctacagatatatctttcctgcggaacctaaa 28928149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 298
Target Start/End: Complemental strand, 38214839 - 38214731
Alignment:
Q  190 aaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggacttactacaaggaaagttag 289  Q
    ||||| ||||||||||||||||  | ||||||||||| |||||||  ||||||||| ||||||||||  ||||| |||||||| |||||| |||| || |    
T  38214839 aaaatctgcaggaaatgtgttttatgcagaatttacataaaaatccgcaggaaaagctaaaagttctagtattggctggacttgctacaaagaaaattgg 38214740  T
Q  290 aactgagcc 298  Q
    | |||||||    
T  38214739 agctgagcc 38214731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 28928157 - 28928073
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcagg-aaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttct 256  Q
    |||||||||||||||| ||||| |||||| ||||||||||||| | |||||||||||||| ||  ||||||||| ||||| ||||    
T  28928157 gaacctaaatccttggcaaaatctgcagggaaatgtgtttcctgcggaatttacacaaaactccgcaggaaaagctaaaaattct 28928073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 36406407 - 36406463
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttc 117  Q
    ||||||||||||||||||| ||||||||||||||| ||||  |||||||||||||||    
T  36406407 tgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 36406463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 226
Target Start/End: Original strand, 31500736 - 31500902
Alignment:
Q  66 aaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtattgcct 165  Q
    ||||||||||| || |||  ||||||||||  | |  ||||||| |||||||||||  ||||||||||||  |||||||||||||| || |||||| |||    
T  31500736 aaaaaatttattgcaaaatattacttccttcatacgaataattttacatttcctacgtatatatctttccaacggatcctaaaatcctaaggtattacct 31500835  T
Q  166 tacctgag------aacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttaca 226  Q
     ||||  |      ||| ||||||||||| |||||  | |||||||||||||||| |||||||||||    
T  31500836 caccttggaatctaaacataaatccttggcaaaatccgtaggaaatgtgtttcctgcagaatttaca 31500902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 36406507 - 36406564
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaa 230  Q
    |||||| ||||||||| ||||| ||||||||||||||||||| | |||||||||||||    
T  36406507 gaacctcaatccttggcaaaatctgcaggaaatgtgtttcctacggaatttacacaaa 36406564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 3383994 - 3384045
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||| ||||||||||||||  |||||||||||||||||| ||||||    
T  3383994 ctgcagataaattcacatttcctacggatatatctttcctgcggaacctaaa 3384045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 301
Target Start/End: Original strand, 27321885 - 27321996
Alignment:
Q  190 aaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggacttactacaaggaaagttag 289  Q
    ||||| ||||||||||||||||||| | ||||||||| |||||||  ||||||||  |||||||| |  || || |||| ||| |||||| |||| || |    
T  27321885 aaaatttgcaggaaatgtgtttcctgcggaatttacataaaaatccgcaggaaaaactaaaagttttagtaatggctgggcttgctacaaagaaaattgg 27321984  T
Q  290 aactgagcctgg 301  Q
    | ||||||||||    
T  27321985 agctgagcctgg 27321996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 36406465 - 36406508
Alignment:
Q  98 tgcagataatttcacatttcctacacatatatctttcctgcgga 141  Q
    ||||||||||||||||||||||||  ||||||||||||||||||    
T  36406465 tgcagataatttcacatttcctacggatatatctttcctgcgga 36406508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 34282782 - 34282836
Alignment:
Q  65 caaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    |||||||||||||||  |||||||||||||| ||||  |||||||||||||||||    
T  34282782 caaaaaatttatcgcacaacgttacttccttcctgcgaataatttcacatttcct 34282836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 35384283 - 35384341
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| ||||| ||||||||| || |  |||||||||||||||||    
T  35384283 tgggcaaaaaatttatcgcaaaacggtacttccttcctacgaataatttcacatttcct 35384341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 27321780 - 27321835
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacattt 116  Q
    ||||||||||| ||||||| ||| ||||||||||| ||||  ||||||||||||||    
T  27321780 tgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattt 27321835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 38214923 - 38214865
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||| ||||||| ||| |||||||| || ||||  |||||||||||||||||    
T  38214923 tgggcaaaaaaattatcgcaaaatgttacttcattcctgcgaataatttcacatttcct 38214865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 3383926 - 3383995
Alignment:
Q  50 tttataaaatatgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    |||||| || ||| ||||||| |||||||| ||||||||||||||| || |  |||||||||| ||||||    
T  3383926 tttatagaacatgagcaaaaattttatcgcaaaacgttacttccttcctacgaataatttcacgtttcct 3383995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 21138068 - 21138148
Alignment:
Q  165 ttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaag 245  Q
    ||||||| |||||||||||||||| |||||  |||||||| ||||||| | |  |||||||||  |||||  |||||||||    
T  21138068 ttacctgggaacctaaatccttggcaaaattcgcaggaaacgtgtttcatgcgaaatttacacccaaatccgcaggaaaag 21138148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 72 - 231
Target Start/End: Complemental strand, 25237775 - 25237616
Alignment:
Q  72 tttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtattgccttacctg 171  Q
    |||||| | ||||||||||||||| ||||  ||||||||||||||||| |  ||| |||||||||||| ||||||||||| || |||||| ||| |||||    
T  25237775 tttatcacaaaacgttacttccttcctgcgaataatttcacatttcctgcggatacatctttcctgcgaatcctaaaatcataaggtattacctcacctg 25237676  T
Q  172 agaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaa 231  Q
     |||||||||||||||| ||||| ||||||||||||||||||| | ||||||||||||||    
T  25237675 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaa 25237616  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 64 - 310
Target Start/End: Complemental strand, 52373949 - 52373699
Alignment:
Q  64 gcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacata-tatc---tttcctgcggatcctaaaatcttatggta 159  Q
    |||||||||||||||| ||||||||||||||| ||||  ||||||||||||||||| |  ||| | ||   |||| |||||||||||||||| || ||||    
T  52373949 gcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcggataatttcacatttcatgcggatcctaaaatcctaaggta 52373850  T
Q  160 ttgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttat 259  Q
    || ||| ||||| |||||||||||| ||  ||||| |||| |||||  |||| || | |||||||||||||||||| ||| ||||||||||||||||  |    
T  52373849 ttacctcacctgggaacctaaatccctgacaaaatctgcaagaaatacgttttctgcggaatttacacaaaaatctgcagaaaaagttaaaagttctagt 52373750  T
Q  260 attgactggacttactacaaggaaagttagaactgagcctggattagtgcc 310  Q
    | ||||||  ||||||| || ||||||| || ||||||||||  |||||||    
T  52373749 aatgactgagcttactataaagaaagttggagctgagcctgggctagtgcc 52373699  T

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Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 131 - 310
Target Start/End: Complemental strand, 49745179 - 49745000
Alignment:
Q  131 tttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaa 230  Q
    ||||||||||||||||||||| || |||||| ||| ||||  |||||||||||||||| ||||| ||||| ||||||||||||| | |||||||||||||    
T  49745179 tttcctgcggatcctaaaatcctaaggtattacctcacctaggaacctaaatccttggcaaaatctgcagaaaatgtgtttcctacggaatttacacaaa 49745080  T
Q  231 aatctacaggaaaagttaaaagttcttatattgactggacttactacaaggaaagttagaactgagcctggattagtgcc 310  Q
    ||||||||||||||| ||||| ||||  || || || |||||  || || ||||||| || ||||||||||| |||||||    
T  49745079 aatctacaggaaaaggtaaaacttctagtaatggctagacttgttataaagaaagttggagctgagcctggactagtgcc 49745000  T

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Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 94 - 310
Target Start/End: Complemental strand, 8901979 - 8901764
Alignment:
Q  94 tttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaa 193  Q
    |||||||  |||||||||||||| || |  || ||||||||| | ||||||||||||| || |||||| ||| ||  || || |||||||||||| ||||    
T  8901979 tttctgcgaataatttcacatttactgcggatgtatctttcccgtggatcctaaaatcctaaggtattacctcactgga-aatctaaatccttggcaaaa 8901881  T
Q  194 tatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggacttactacaaggaaagttagaact 293  Q
    | ||||||||||||||||||| | || ||||||||||||||| |||||||||||||||||||| | | || |||| ||| |||||| ||||||| || ||    
T  8901880 tctgcaggaaatgtgtttcctgcggagtttacacaaaaatctgcaggaaaagttaaaagttctaaaaatggctgggctttctacaaagaaagttggagct 8901781  T
Q  294 gagcctggattagtgcc 310  Q
    ||||||||  |||||||    
T  8901780 gagcctgggctagtgcc 8901764  T

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Target: chr4; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 50 - 256
Target Start/End: Original strand, 41972349 - 41972538
Alignment:
Q  50 tttataaaatatgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaa 149  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||||| ||||  |||||||||||||| ||                 |||||||||||||    
T  41972349 tttataaaatctggtcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattttct-----------------gcggatcctaaaa 41972431  T
Q  150 tcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaa 249  Q
    ||||| | |||| ||| ||||| |||||| ||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||  ||||||||| |||    
T  41972432 tcttaagatattacctcacctgggaaccttaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaa 41972531  T

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Target: chr4; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 97 - 234
Target Start/End: Original strand, 2521873 - 2522010
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatat 196  Q
    |||| |||||| |||||||| || |  |||| ||||||||||||||||||||||| || | |||| ||| ||||| ||||||||||||||| |||||| |    
T  2521873 ctgcggataatatcacattttctgcggatatgtctttcctgcggatcctaaaatcctaagatattacctcacctgggaacctaaatccttgataaaatct 2521972  T
Q  197 gcaggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
     ||||||||||||||||| | || ||||||||||||||    
T  2521973 acaggaaatgtgtttcctgcggactttacacaaaaatc 2522010  T

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Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 10058714 - 10058627
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    ||||||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||  |||||||||||||||||| ||||||    
T  10058714 tgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatctttcctgcggaacctaaa 10058627  T

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Target: chr4; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 31364313 - 31364225
Alignment:
Q  60 atgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||  |||||||||| ||||||| ||||||    
T  31364313 atgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatcttttctgcggaacctaaa 31364225  T

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Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 287
Target Start/End: Complemental strand, 50100011 - 50099824
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatat 196  Q
    |||| |||||||||||||||||| || |||||| |    |||||||||||||||| || |||||| | | ||||| |||||||||||||| | ||||| |    
T  50100011 ctgcggataatttcacatttcctgcaaatatatat---atgcggatcctaaaatcctaaggtattacttcacctgggaacctaaatccttagcaaaattt 50099915  T
Q  197 gcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggacttactacaaggaaagtt 287  Q
    |||| |||||  |||||| | |||||||||||||||||  ||| ||||| |||||| |||  || ||  || ||||||||||| |||||||    
T  50099914 gcagaaaatgaatttcctacggaatttacacaaaaatccgcagaaaaagctaaaagctctagtaatggttgaacttactacaaagaaagtt 50099824  T

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Target: chr4; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 173 - 300
Target Start/End: Complemental strand, 40969322 - 40969195
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggactt 272  Q
    ||||||||||| |||  ||||| ||||| ||||||||||||| |||||||||||||||||||  ||||||||| ||||| |||| ||| ||  |||||||    
T  40969322 gaacctaaatcattgacaaaatctgcagaaaatgtgtttcctgcagaatttacacaaaaatccgcaggaaaagctaaaaattctcataatggttggactt 40969223  T
Q  273 actacaaggaaagttagaactgagcctg 300  Q
     |||||| |||||||  | |||||||||    
T  40969222 gctacaaagaaagttgaagctgagcctg 40969195  T

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Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 234
Target Start/End: Complemental strand, 36947657 - 36947555
Alignment:
Q  132 ttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaa 231  Q
    |||||||||||||||||||| || |||||| ||  ||||| |||||||||| ||||| |||||  ||||||||| |||||||| ||||||||| ||||||    
T  36947657 ttcctgcggatcctaaaatcctaaggtattaccacacctgggaacctaaattcttggcaaaatccgcaggaaatatgtttcctgcagaatttatacaaaa 36947558  T
Q  232 atc 234  Q
    |||    
T  36947557 atc 36947555  T

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Target: chr4; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 173 - 301
Target Start/End: Complemental strand, 31364233 - 31364105
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggactt 272  Q
    |||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||  ||||||||  ||||| ||||  || ||  |||| ||    
T  31364233 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaaactaaaatttctagtaatggttggattt 31364134  T
Q  273 actacaaggaaagttagaactgagcctgg 301  Q
     |||||| ||||||| || | ||||||||    
T  31364133 gctacaaagaaagttggagccgagcctgg 31364105  T

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Target: chr4; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 301
Target Start/End: Complemental strand, 50383978 - 50383858
Alignment:
Q  181 atccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggacttactacaag 280  Q
    |||||||| ||||| ||||||||||||||||||| || ||||||| |||| |||  ||||||||| ||||||||||  || || |||| ||| ||||||     
T  50383978 atccttggcaaaatctgcaggaaatgtgtttcctgcaaaatttacgcaaacatccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaa 50383879  T
Q  281 gaaagttagaactgagcctgg 301  Q
    ||||||| || ||||||||||    
T  50383878 gaaagttggagctgagcctgg 50383858  T

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Target: chr4; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 4728702 - 4728648
Alignment:
Q  94 tttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  4728702 tttctgcagataatttcacatttcctacagatatatctttcctgcggaacctaaa 4728648  T

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Target: chr4; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 4728756 - 4728701
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacattt 116  Q
    ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  4728756 tgggcaaaaaatttatcgcaaaacgttacttccttcctgcaaataatttcacattt 4728701  T

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Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 4552383 - 4552325
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| ||||||||||||||| || || |||||||||||||||||    
T  4552383 tgggcaaaaaatttatcgcaaaacgttacttccttcctacaaataatttcacatttcct 4552325  T

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Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 10058635 - 10058577
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaa 231  Q
    |||||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||||    
T  10058635 gaacctaaatccttggtaaaatctgctggaaatgtgtttcctgcggaatttacacaaaa 10058577  T

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Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 40969368 - 40969314
Alignment:
Q  94 tttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||| ||||||    
T  40969368 tttctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaa 40969314  T

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Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 2017355 - 2017416
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctaca 122  Q
    ||||||||||||||||||| ||||||||||||||| || |  ||||||||||||||||||||    
T  2017355 tgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctaca 2017416  T

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Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 2521805 - 2521874
Alignment:
Q  50 tttataaaatatgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    |||||| || |||||||||||||||||||  ||||||||||||||| ||||  |||||||||||||||||    
T  2521805 tttatagaacatgggcaaaaaatttatcgtaaaacgttacttccttcctgcgaataatttcacatttcct 2521874  T

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Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 4728656 - 4728595
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
    |||||||||||||||| ||||| ||||||||||||||||||| | |||||||| ||||||||    
T  4728656 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttactcaaaaatc 4728595  T

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Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 31929041 - 31929102
Alignment:
Q  165 ttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttaca 226  Q
    ||||||| |||||||||||||||| ||||| ||||||||||||||||| | |||||||||||    
T  31929041 ttacctgggaacctaaatccttggcaaaatttgcaggaaatgtgtttcttgcagaatttaca 31929102  T

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Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 10715754 - 10715670
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcagga-aatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttct 256  Q
    |||||||||||||||| ||||| ||||||  |||||||||||| | |||||||||||||||||  ||||||||| ||||| ||||    
T  10715754 gaacctaaatccttggcaaaatctgcagggcaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattct 10715670  T

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Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 10929524 - 10929440
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcagga-aatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttct 256  Q
    |||||||||||||||| ||||| ||||||  |||||||||||| | |||||||||||||||||  ||||||||| ||||| ||||    
T  10929524 gaacctaaatccttggcaaaatctgcagggcaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattct 10929440  T

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Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 10715797 - 10715746
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||||||||||||||||||  |||||||||||||||||| ||||||    
T  10715797 ctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaa 10715746  T

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Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 10929567 - 10929516
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||||||||||||||||||  |||||||||||||||||| ||||||    
T  10929567 ctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaa 10929516  T

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Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 40969422 - 40969367
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacattt 116  Q
    ||||||||||||||||||| ||||||||||||||||||||  ||||||||| ||||    
T  40969422 tgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcatattt 40969367  T

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Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 10715854 - 10715796
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| |||| |||||||||| ||||  |||||||||||||||||    
T  10715854 tgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcct 10715796  T

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Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 10929624 - 10929566
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| |||| |||||||||| ||||  |||||||||||||||||    
T  10929624 tgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcct 10929566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 32006081 - 32006023
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| ||||||||||||||| || |  |||||||||||||||||    
T  32006081 tgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 32006023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 46645801 - 46645743
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    |||| |||||||||||||| ||||||||||||||| ||||  |||||||||||||||||    
T  46645801 tgggaaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 46645743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 46645701 - 46645640
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
    |||||||||  ||||| ||||| |||| |||||||||||||| |||||||||||||||||||    
T  46645701 gaacctaaactcttggcaaaatctgcatgaaatgtgtttcctgcagaatttacacaaaaatc 46645640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 301
Target Start/End: Complemental strand, 4552283 - 4552155
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggactt 272  Q
    |||||||||||||||| ||||| ||||||||||   |||||| | ||||||||||| |||||  ||||||||| ||||| ||||  || ||   || |||    
T  4552283 gaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacacaaatccgcaggaaaagctaaaaattctagtaatggtagggctt 4552184  T
Q  273 actacaaggaaagttagaactgagcctgg 301  Q
     |||||| ||||||| || ||||||||||    
T  4552183 gctacaaagaaagttggagctgagcctgg 4552155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 9003586 - 9003510
Alignment:
Q  241 aaaagttaaaagttcttatattgactggacttactacaaggaaagttagaactgagcctggattagtgcctatgcta 317  Q
    ||||||||||||||||| || ||||||| ||| |||||| |||| || || ||||||||||| ||||||||| ||||    
T  9003586 aaaagttaaaagttcttgtaatgactgggcttgctacaaagaaaattggagctgagcctggactagtgcctaggcta 9003510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 4552326 - 4552275
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||| ||||||||||||||  |||||||||||||||||| ||||||    
T  4552326 ctgcagataaattcacatttcctacggatatatctttcctgcggaacctaaa 4552275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 2576381 - 2576331
Alignment:
Q  50 tttataaaatatgggcaaaaaatttatcgctaaacgttacttcctttctgc 100  Q
    |||||||| | ||||||||||| ||||||| ||||||||||||||||||||    
T  2576381 tttataaagtctgggcaaaaaaattatcgcaaaacgttacttcctttctgc 2576331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 50100068 - 50100010
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    |||| |||||||||||||| ||||||||||||||| || |  |||||||||||||||||    
T  50100068 tgggtaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 50100010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 2017415 - 2017463
Alignment:
Q  100 cagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    ||||||| ||||||||||||||  |||||||||||||||||| ||||||    
T  2017415 cagataaattcacatttcctacggatatatctttcctgcggaacctaaa 2017463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 2576316 - 2576264
Alignment:
Q  94 tttctgcagataatttcacatttcctacacatatatctttcctgcggatccta 146  Q
    |||||||||||||||| |||||||||||  |||||| ||||||||||| ||||    
T  2576316 tttctgcagataattttacatttcctacggatatatatttcctgcggaaccta 2576264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 2017455 - 2017538
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttct 256  Q
    |||||||||| ||||| ||||| ||| ||||||   |||||| | |||||||||||||||||  ||||||||| ||||| ||||    
T  2017455 gaacctaaatacttggcaaaatctgcgggaaatacatttcctgcggaatttacacaaaaatccgcaggaaaagctaaaaattct 2017538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 11826968 - 11827026
Alignment:
Q  63 ggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctac 121  Q
    ||||||||| ||||||  ||| ||||||||||| ||||  |||||||||||||||||||    
T  11826968 ggcaaaaaaattatcgtaaaatgttacttccttcctgcgaataatttcacatttcctac 11827026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 14044449 - 14044395
Alignment:
Q  179 aaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaat 233  Q
    ||||||| || ||||| ||||||||||||||||||| | ||||||||| ||||||    
T  14044449 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaat 14044395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 25237588 - 25237534
Alignment:
Q  247 taaaagttcttatattgactggacttactacaaggaaagttagaactgagcctgg 301  Q
    ||||||||||  || |||||||||||||||||| ||||||| || ||||||||||    
T  25237588 taaaagttctagtaatgactggacttactacaaagaaagttggagctgagcctgg 25237534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 2576270 - 2576209
Alignment:
Q  173 gaacctaaatccttggtaaaa-tatgcaggaaatgtgtttccttcagaatttacacaaaaat 233  Q
    ||||||| |||||||| |||| | ||||||||||||||||||| | ||||||| ||||||||    
T  2576270 gaacctacatccttggcaaaaatctgcaggaaatgtgtttcctgcggaatttatacaaaaat 2576209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 14044533 - 14044464
Alignment:
Q  50 tttataaaatatgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    |||||| | ||||||||||||| ||||||| ||| ||||| ||||| |||   |||||||||||||||||    
T  14044533 tttatagagtatgggcaaaaaaattatcgcaaaatgttacctccttcctgagaataatttcacatttcct 14044464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 9694191 - 9694139
Alignment:
Q  179 aaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaa 231  Q
    ||||||| || ||||| ||||||||||||||||||| | ||||||||| ||||    
T  9694191 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaa 9694139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 32006024 - 32005980
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcgga 141  Q
    ||||| |||| ||||||||||||||  ||||||||||||||||||    
T  32006024 ctgcaaataaattcacatttcctacggatatatctttcctgcgga 32005980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 97 - 234
Target Start/End: Original strand, 2836142 - 2836279
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatat 196  Q
    |||||||||||||||||||||||    |||||  ||||||||||||||||||||| ||||||||| ||| ||||| |||||||||||||||  ||||| |    
T  2836142 ctgcagataatttcacatttcctgtcgatatacttttcctgcggatcctaaaatcctatggtattacctcacctgggaacctaaatccttgacaaaatct 2836241  T
Q  197 gcaggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
    ||||||||||| |||||| | |||||||||| ||||||    
T  2836242 gcaggaaatgtatttcctgcggaatttacacgaaaatc 2836279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 339448 - 339352
Alignment:
Q  158 tattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagtt 254  Q
    |||| ||| ||||| |||||||||||||||||||||| |||||||||||| |||||| | ||||||||||||||||| |||||||||| ||||||||    
T  339448 tattacctcacctgggaacctaaatccttggtaaaatctgcaggaaatgtatttcctacggaatttacacaaaaatccacaggaaaagctaaaagtt 339352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 301
Target Start/End: Original strand, 10397810 - 10397938
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggactt 272  Q
    |||||||||||||||| ||||||||||||||||||||||||| | |||||||||||| ||||  ||||||||| ||||| ||||  || ||  |||  ||    
T  10397810 gaacctaaatccttggcaaaatatgcaggaaatgtgtttcctgcggaatttacacaacaatccgcaggaaaagctaaaaattctcgtaatggttgggttt 10397909  T
Q  273 actacaaggaaagttagaactgagcctgg 301  Q
     |||||| ||||||| || ||||||||||    
T  10397910 gctacaaagaaagttggagctgagcctgg 10397938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 34249031 - 34249114
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttct 256  Q
    ||||||||| |||||| ||||| ||||||||||||||||||| |||||||||||||||||||  ||||||||| ||||| ||||    
T  34249031 gaacctaaacccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaaaatccgcaggaaaagctaaaaattct 34249114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 1781040 - 1781118
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaa 251  Q
    |||||||||||||||| ||||| |||||||||||||||||||   ||||||||||||||||| |||||||||| |||||    
T  1781040 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgaggaatttacacaaaaatccacaggaaaagctaaaa 1781118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 1780961 - 1781048
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||| |||||||||||| ||||||||||||||| ||||  |||||||||||||||||||  ||||||||||  |||||| ||||||    
T  1780961 tgggcataaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatcttttatgcggaacctaaa 1781048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 23663777 - 23663855
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaa 251  Q
    |||| ||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||  ||||||||| |||||    
T  23663777 gaacataaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggaaaagctaaaa 23663855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 34248931 - 34248989
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||    
T  34248931 tgggcaaaaaatttatcgcaaaacgttacttccttcctgcggataatttcacatttcct 34248989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 9046933 - 9047000
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacagg 240  Q
    |||||||||||||||  ||||| ||||||||||||||||||| | |||| ||||||||||||||||||    
T  9046933 gaacctaaatccttgacaaaatctgcaggaaatgtgtttcctgcggaatctacacaaaaatctacagg 9047000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 9696153 - 9696086
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacagg 240  Q
    |||||||||||||||| ||||| |||||||||| |||||||| | |||||||||||||||||| ||||    
T  9696153 gaacctaaatccttggcaaaatctgcaggaaatatgtttcctgcggaatttacacaaaaatctgcagg 9696086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 9696253 - 9696195
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||    
T  9696253 tgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 9696195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 10397727 - 10397784
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcc 118  Q
    ||||||||||||||||||| ||||||||||||||| ||||  ||||||||||||||||    
T  10397727 tgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcc 10397784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 9696196 - 9696145
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||||||||||||||||||  |||||||||||||||||| ||||||    
T  9696196 ctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaa 9696145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 15122241 - 15122186
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacattt 116  Q
    ||||||||||||||||||| ||||||||||| ||||||||  ||||||||||||||    
T  15122241 tgggcaaaaaatttatcgcaaaacgttactttctttctgcgaataatttcacattt 15122186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 15529087 - 15529036
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||| ||||||||||||||| |||||||||||||||||| ||||||    
T  15529087 ctgcagataaattcacatttcctacagatatatctttcctgcggaacctaaa 15529036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 339536 - 339478
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| ||| ||||||||||| |||||  ||||||||||||||||    
T  339536 tgggcaaaaaatttatcgcaaaatgttacttccttcctgcaattaatttcacatttcct 339478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 2941420 - 2941362
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| ||||||||||||||| || |  |||||||||||||||||    
T  2941420 tgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 2941362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 301
Target Start/End: Complemental strand, 2960776 - 2960654
Alignment:
Q  179 aaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggacttactaca 278  Q
    ||||||| || |||||  ||||||||||||||| || |  |||||||| || ||||  ||||||||| ||||||||||  ||||| |||||||| |||||    
T  2960776 aaatcctgggcaaaattagcaggaaatgtgttttctgcgaaatttacataataatccgcaggaaaagctaaaagttctagtattggctggacttgctaca 2960677  T
Q  279 aggaaagttagaactgagcctgg 301  Q
    | |||| || || ||||||||||    
T  2960676 aagaaaattggagctgagcctgg 2960654  T

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Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 2941320 - 2941259
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
    |||||||||||||||| ||||| ||||||||||||||||||| |  ||||||||| ||||||    
T  2941320 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcgaaatttacactaaaatc 2941259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 15122141 - 15122080
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
    |||| ||||||||||| ||||| ||||||||||||||||||| ||||||||| ||| |||||    
T  15122141 gaacgtaaatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttagacacaaatc 15122080  T

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Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 2941363 - 2941312
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||||||||||||||||||  ||||||||||| |||||| ||||||    
T  2941363 ctgcagataatttcacatttcctacggatatatctttcatgcggaacctaaa 2941312  T

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Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 9046890 - 9046941
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||||||||||||||||||| |||||| |||| |||||| ||||||    
T  9046890 ctgcagataatttcacatttcctacagatatatatttcttgcggaacctaaa 9046941  T

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Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 15122187 - 15122140
Alignment:
Q  94 tttctgcagataatttcacatttcctacacatatatctttcctgcgga 141  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  15122187 tttctgcagataattttacatttcctacggatatatctttcctgcgga 15122140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 31200137 - 31200196
Alignment:
Q  102 gataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggtatt 161  Q
    |||||||||||||||||| || ||||||||| ||||||||| |||||||| || ||||||    
T  31200137 gataatttcacatttcctgcagatatatcttacctgcggattctaaaatcctaaggtatt 31200196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 34188922 - 34188859
Alignment:
Q  131 tttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaat 194  Q
    ||||||||||||||||||||| || |||||| | | ||||||||| ||||||| ||||||||||    
T  34188922 tttcctgcggatcctaaaatcctaaggtattacttcacctgagaatctaaatcattggtaaaat 34188859  T

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Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 23663682 - 23663735
Alignment:
Q  66 aaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    |||||||||||||| |||||||||||| || ||||  |||||||||||||||||    
T  23663682 aaaaaatttatcgcaaaacgttacttcattcctgcgaataatttcacatttcct 23663735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 31200073 - 31200130
Alignment:
Q  60 atgggcaaaaaatttatcgctaaa-cgttacttcctttctgcagataatttcacattt 116  Q
    |||||||||||| ||||||||||| |||||||||||| ||||  ||||||||||||||    
T  31200073 atgggcaaaaaaattatcgctaaaacgttacttccttcctgcgaataatttcacattt 31200130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 31188230 - 31188290
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctac 121  Q
    ||||||||||| ||||||| ||||||||||||||| |||   |||||||||||||| ||||    
T  31188230 tgggcaaaaaaattatcgcaaaacgttacttccttcctgtgaataatttcacattttctac 31188290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 15529044 - 15528987
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaa 230  Q
    |||||||||||||||| ||||| ||||||||||   |||||| | |||||||||||||    
T  15529044 gaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaa 15528987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 31188314 - 31188351
Alignment:
Q  124 atatatctttcctgcggatcctaaaatcttatggtatt 161  Q
    |||||||||||||||||||||||||||| || ||||||    
T  31188314 atatatctttcctgcggatcctaaaatcctaaggtatt 31188351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 14938945 - 14938989
Alignment:
Q  190 aaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatc 234  Q
    ||||| ||||||||||||||||||| | ||||||||| |||||||    
T  14938945 aaaatctgcaggaaatgtgtttcctgcggaatttacataaaaatc 14938989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 15529142 - 15529086
Alignment:
Q  63 ggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||| |||| ||||||| || || |  |||||||||||||||||    
T  15529142 ggcaaaaaatttatcgcaaaacattacttctttcctacgaataatttcacatttcct 15529086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 28614325 - 28614377
Alignment:
Q  64 gcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacattt 116  Q
    |||||||| ||||||| ||| ||||||||||| ||||  ||||||||||||||    
T  28614325 gcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattt 28614377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 61 - 209
Target Start/End: Original strand, 112122 - 112271
Alignment:
Q  61 tgggcaaaaa-atttatcgctaaacgttacttcctttctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaaatcttatggta 159  Q
    |||||||||| |||||| || |||| |||||||||| ||||| |||||||||| |||| |    |||||||||||||||||||||||||||| |||||||    
T  112122 tgggcaaaaatatttattgcaaaacattacttccttcctgcaaataatttcacgtttcatgtggatatatctttcctgcggatcctaaaatcctatggta 112221  T
Q  160 ttgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgt 209  Q
    || ||| | ||| |||||||||| ||| | | ||| ||||| ||||||||    
T  112222 ttacctcatctgggaacctaaattcttagcagaatctgcagaaaatgtgt 112271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 310
Target Start/End: Original strand, 109275 - 109466
Alignment:
Q  131 tttcctgcggatcctaaaatcttatggtattgccttacctgagaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaa 230  Q
    ||||||| ||||||||||||| |||||||||  || ||||| |||||||||| ||| | ||||| ||||| | |||||||| || | |||||||||||||    
T  109275 tttcctgtggatcctaaaatcctatggtattatctcacctgggaacctaaattcttagcaaaatctgcagaacatgtgttttctgcggaatttacacaaa 109374  T
Q  231 aat------------ctacaggaaaagttaaaagttcttatattgactggacttactacaaggaaagttagaactgagcctggattagtgcc 310  Q
    |||            | |||||||||||||||||||||  || | |||||  || |||||| ||||||| || ||||||||||| |||||||    
T  109375 aattcgcaggtaaatccacaggaaaagttaaaagttctagtaataactggggttgctacaaagaaagttggagctgagcctggactagtgcc 109466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 1893 - 1835
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  1893 tgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcacatttcct 1835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 173 - 298
Target Start/End: Complemental strand, 1793 - 1668
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttcttatattgactggactt 272  Q
    |||| ||||| ||||| ||||| ||||||||||||||||||| |  ||||||||||||||||   |||||||| ||||| || | ||| ||| ||| |||    
T  1793 gaacgtaaattcttggcaaaatctgcaggaaatgtgtttcctgcgaaatttacacaaaaatccgaaggaaaaggtaaaaattttaataatgattgggctt 1694  T
Q  273 actacaaggaaagttagaactgagcc 298  Q
     |||||| ||||||| || |||||||    
T  1693 tctacaaagaaagttggagctgagcc 1668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 1836 - 1792
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcgga 141  Q
    |||||||||| ||||||||||||||  ||||||||||||||||||    
T  1836 ctgcagataagttcacatttcctacggatatatctttcctgcgga 1792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 7008 - 6925
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaagttaaaagttct 256  Q
    |||||||||||||||| ||||| |||||||||||  |||||||| |||||||||||| ||||  ||||||||| ||||| ||||    
T  7008 gaacctaaatccttggcaaaatctgcaggaaatgcatttccttcggaatttacacaataatccgcaggaaaagctaaaaattct 6925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 11721 - 11663
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| ||||||||||||||| || |  |||||||||||||||||    
T  11721 tgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 11663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 11664 - 11613
Alignment:
Q  97 ctgcagataatttcacatttcctacacatatatctttcctgcggatcctaaa 148  Q
    |||||||||| ||||||||||||||  |||||||||||||||||| ||||||    
T  11664 ctgcagataaattcacatttcctacggatatatctttcctgcggaacctaaa 11613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 11621 - 11549
Alignment:
Q  173 gaacctaaatccttggtaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatctacaggaaaag 245  Q
    |||||||||||||||| ||||| |||||||||||  ||| || | |||||||||||| ||||  |||||||||    
T  11621 gaacctaaatccttggcaaaatctgcaggaaatgcattttctgcggaatttacacaataatccgcaggaaaag 11549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 7107 - 7050
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcct 119  Q
    ||||||||||||||||||| ||||||||||||||| || |  ||||||| |||||||||    
T  7107 tgggcaaaaaatttatcgc-aaacgttacttccttcctacgaataattttacatttcct 7050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 4275 - 4215
Alignment:
Q  61 tgggcaaaaaatttatcgctaaacgttacttcctttctgcagataatttcacatttcctac 121  Q
    ||||||||||| ||||||| ||| ||||||||||| ||||  |||||||||||||||||||    
T  4275 tgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttcctac 4215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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