View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4442_high_8 (Length: 239)
Name: NF4442_high_8
Description: NF4442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4442_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40056934 - 40056714
Alignment:
| Q |
1 |
ttcacttcctctaagatttatgaaaatgacaccaagatctcctatagttttaaaacttacacttatctccttcgaattctcatgaaatagacaaacacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40056934 |
ttcacttcctctaagatttatgaaaatgacaccaagatctcctatagtttaaaaacttacacttatctccttcgaattctcatgaaatagacaaacacat |
40056835 |
T |
|
| Q |
101 |
cccttacttgttaacaccgttgcttttccgttaattttcacacatattgatccatcttcttcactcatcatttccttgtcgtagttattactatcctatc |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||| |
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| T |
40056834 |
cccttacttgttaacaccgttgctttttcgttaattttcacacatattgatccatcttcctcactcatcctttccttgtcgttgttattactatcctatc |
40056735 |
T |
|
| Q |
201 |
gctcatgtcatggttctcacc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
40056734 |
gctcatgtcatggttctcacc |
40056714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 35064477 - 35064378
Alignment:
| Q |
17 |
tttatgaaaatgacaccaagatctcctatagttttaaaacttacacttatctccttcgaattctcatgaaatagacaaacacatcccttacttgttaaca |
116 |
Q |
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||||| |||||||||| || ||| ||| ||||||||||||| ||||| | ||| | ||||||||| ||||||| ||| || ||||||| ||||||||| |
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| T |
35064477 |
tttattaaaatgacactaacatcccctctagttttaaaactcacactaacttcccttaaattctcatcaaatagataaatacctcccttatttgttaaca |
35064378 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 1300052 - 1300096
Alignment:
| Q |
77 |
ttctcatgaaatagacaaacacatcccttacttgttaacaccgtt |
121 |
Q |
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| T |
1300052 |
ttctaatgaaatagacaaacacctcccttccttattaacaccgtt |
1300096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 41714118 - 41714166
Alignment:
| Q |
24 |
aaatgacaccaagatctcctatagttttaaaacttacacttatctcctt |
72 |
Q |
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|||||||||||| ||||||| || |||||||||||||||| | |||||| |
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| T |
41714118 |
aaatgacaccaacatctcctctaattttaaaacttacactaacctcctt |
41714166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 39484360 - 39484560
Alignment:
| Q |
20 |
atgaaaatgacaccaagatctcctatagttttaaaacttacacttatctccttcgaattctcatgaaatagacaaacacatcccttacttgttaacaccg |
119 |
Q |
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|||||||||||||||| ||| || || |||||||||||||||||| |||| || | ||||||||||||| | |||||||||||||| || ||||||||| |
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| T |
39484360 |
atgaaaatgacaccaatatccccactaattttaaaacttacacttacctccctcaagttctcatgaaatatataaacacatcccttatttattaacaccg |
39484459 |
T |
|
| Q |
120 |
ttgcttttccgttaattttcacacatattgatccatcttcttcactcatcatttccttgtcgtagttattactatcctatcgctcatgtcatggttctca |
219 |
Q |
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|| |||||||||||||||||||| |||||||||||||||| | ||| || |||||| ||| | ||||||||||| |||||||||||||||||| ||||| |
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| T |
39484460 |
ttacttttccgttaattttcacagatattgatccatcttcctatctcgtc-tttcctcgtcattgttattactatgctatcgctcatgtcatggctctca |
39484558 |
T |
|
| Q |
220 |
cc |
221 |
Q |
| |
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|| |
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|
| T |
39484559 |
cc |
39484560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 50071335 - 50071391
Alignment:
| Q |
80 |
tcatgaaatagacaaacacatcccttacttgttaacaccgttgcttttccgttaatt |
136 |
Q |
| |
|
|||| ||||| |||||||| |||||||||| ||||||||||| ||||| ||||||| |
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| T |
50071335 |
tcatcaaatacacaaacacttcccttacttattaacaccgttagttttcagttaatt |
50071391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 35145621 - 35145742
Alignment:
| Q |
45 |
tagttttaaaacttacacttatctccttcgaattctcatgaaatagacaaacacatcccttacttgttaacaccgttgcttttccgttaattttcacaca |
144 |
Q |
| |
|
||||||||||||||||||| | |||| |||| ||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
35145621 |
tagttttaaaacttacactaacctccctcgagttctcataaaatagacaaacacatcccttacttgttaacacagttacttttccgttaattttcacaca |
35145720 |
T |
|
| Q |
145 |
tattgatccatcttcttcactc |
166 |
Q |
| |
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||||||| ||||||| |||||| |
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| T |
35145721 |
tattgattcatcttcctcactc |
35145742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 25476116 - 25476028
Alignment:
| Q |
45 |
tagttttaaaacttacacttatctccttcgaattctcatgaaatagacaaacacatcccttacttgttaacaccgttgcttttccgtta |
133 |
Q |
| |
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|||||||||||||||||| | |||| || | || | |||||||| |||||||| ||||||| | ||||||||||| |||||||||| |
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| T |
25476116 |
tagttttaaaacttacacgaacctccctcaagtttttatgaaataaacaaacacctcccttatctattaacaccgttaattttccgtta |
25476028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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