View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4442_low_1 (Length: 543)
Name: NF4442_low_1
Description: NF4442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4442_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 55301671 - 55301406
Alignment:
| Q |
19 |
ccattaagaagcaaaggaatctatatacacagacataaacatgctaaaaatagtagaatacaaggacaagattgatgaatgaatatacctgcactccgtc |
118 |
Q |
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| T |
55301671 |
ccattaagaagcaaaggaatctatatacacagacataaacatgctaaaaatagtagaatacaaggacaagattgatgaatgaatatacctgcactccgtc |
55301572 |
T |
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| Q |
119 |
agcgccaaatacctcccgaagcatagcccgtatcatggatctctttcctacatttgggggtccttcaaatataaaatgattacagccacacccaccttta |
218 |
Q |
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| T |
55301571 |
agcgccaaatacctcccgaagcatagcccgtatcatggatctctttcctacatttgggggtccttcaaatataaaatgattacagccacacccaccttta |
55301472 |
T |
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| Q |
219 |
acctatatacgcagcaattacaaaagaaattatattacctatgttgggcatgcagttgtgatcttg |
284 |
Q |
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| T |
55301471 |
acctatatacgcagcaattacaaaagaaattatattacctatgttgggcatgcagttgtgatcttg |
55301406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 339 - 543
Target Start/End: Complemental strand, 55301351 - 55301147
Alignment:
| Q |
339 |
cgaagcatcatattcttcttaccaatgatttcagctgaagagcttactctctgttgcagctgaagtctgcaaatatcttgggctgggatttgggttcaca |
438 |
Q |
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| T |
55301351 |
cgaagcatcatattcttcttaccaatgctttcagctgaagtgctttatctctgttgcagatgaagtctgccaatatcttgggctggtatttggttgccca |
55301252 |
T |
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| Q |
439 |
cggatactcatacatctttccttcctcagccgagttcatcgacttatacacacaaagtacttcaattgcaactctatgttcagaatcagtcttttgacca |
538 |
Q |
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| T |
55301251 |
cagatactcatacatatttccttccacagccgtgttcatcgacttatgctcacaaggtaattccattgacactgtttgttcagaagcagtcttttgacca |
55301152 |
T |
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| Q |
539 |
cccaa |
543 |
Q |
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| T |
55301151 |
cccaa |
55301147 |
T |
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