View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4442_low_10 (Length: 227)
Name: NF4442_low_10
Description: NF4442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4442_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 18629789 - 18629733
Alignment:
| Q |
155 |
ttaacctctccgaccaacggtctccaaacatcctcggcagctggcaaaacaaccaat |
211 |
Q |
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| T |
18629789 |
ttaacctctccgaccaacggtctccaaacatcctcggcagctggcaaaacaaccaat |
18629733 |
T |
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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 18629934 - 18629893
Alignment:
| Q |
10 |
acatcatcaccaatcttctctctctccacattaccaacatcc |
51 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
18629934 |
acatcatcaccaatcttctctctctccacattaccaacatcc |
18629893 |
T |
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