View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4442_low_11 (Length: 216)

Name: NF4442_low_11
Description: NF4442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4442_low_11
NF4442_low_11
[»] chr6 (4 HSPs)
chr6 (98-216)||(12901510-12901628)
chr6 (95-168)||(12950590-12950663)
chr6 (2-74)||(12950494-12950566)
chr6 (2-74)||(12901420-12901489)
[»] chr7 (1 HSPs)
chr7 (138-212)||(3761155-3761229)
[»] chr5 (3 HSPs)
chr5 (5-74)||(31392296-31392364)
chr5 (95-204)||(31392376-31392488)
chr5 (99-196)||(34221329-34221429)
[»] scaffold0148 (1 HSPs)
scaffold0148 (99-183)||(33902-33989)
[»] chr8 (3 HSPs)
chr8 (100-194)||(7493691-7493785)
chr8 (142-203)||(27656309-27656370)
chr8 (127-183)||(21138345-21138401)
[»] chr1 (1 HSPs)
chr1 (120-196)||(43346855-43346931)


Alignment Details
Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 98 - 216
Target Start/End: Original strand, 12901510 - 12901628
Alignment:
Q  98 acaatcttagtctcaaatcattgaaggagtgctacaaggcttctacacacttttgacgttaagaaacagttaatgcatcttttaacacgtttacatttgt 197  Q
    ||||| || |||||||||||||||||||||| |||||||||||||||| | ||||||  ||||||||||| |||||||||||||||||||||||| ||||    
T  12901510 acaatatttgtctcaaatcattgaaggagtgttacaaggcttctacacgcatttgacaataagaaacagtcaatgcatcttttaacacgtttacacttgt 12901609  T
Q  198 aaatttttctgctatattt 216  Q
    ||||||| |||||||||||    
T  12901610 aaattttactgctatattt 12901628  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 12950590 - 12950663
Alignment:
Q  95 tccacaatcttagtctcaaatcattgaaggagtgctacaaggcttctacacacttttgacgttaagaaacagtt 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12950590 tccacaatcttagtctcaaatcattgaaggagtgctacaaggcttctacacacttttgacgttaagaaacagtt 12950663  T

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Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 12950494 - 12950566
Alignment:
Q  2 cagcacaacctactcctacctcactgttcatccatcacttttttagtctcttccatcaaaaccactaaagtgc 74  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12950494 cagcacaacctactcctacctcactgttcatccatcactttttttgtctcttccatcaaaaccactaaagtgc 12950566  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 12901420 - 12901489
Alignment:
Q  2 cagcacaacctactcctacctcactgttcatccatcacttttttagtctcttccatcaaaaccactaaagtgc 74  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||    
T  12901420 cagcacaacctactcctacctcactgttcat-catcactttttt-gtctcttccatc-aaaccactaaagtgc 12901489  T

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Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 3761155 - 3761229
Alignment:
Q  138 ttctacacacttttgacgttaagaaacagttaatgcatcttttaacacgtttacatttgtaaatttttctgctat 212  Q
    |||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||  |||||||||||||    
T  3761155 ttctacacacatttgacgtcaagaaacaggtaatgcatcttttaacacgtttacatttgttgatttttctgctat 3761229  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 31392296 - 31392364
Alignment:
Q  5 cacaacctactcctacctcactgttcatccatcacttttttagtctcttccatcaaaaccactaaagtgc 74  Q
    |||||||||||||||||||||| |||||||||||| ||||| | |||||| ||||||||| |||||||||    
T  31392296 cacaacctactcctacctcactattcatccatcaccttttt-gactcttctatcaaaacccctaaagtgc 31392364  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 204
Target Start/End: Original strand, 31392376 - 31392488
Alignment:
Q  95 tccacaatcttagtctcaaatcattgaag---gagtgctacaaggcttctacacacttttgacgttaagaaacagttaatgcatcttttaacacgtttac 191  Q
    |||||||| || |||||||||||||||||   ||||| ||||| |||||||||||| ||||||||  | ||| |  |||||||||||||||| |||| |     
T  31392376 tccacaatttttgtctcaaatcattgaagaaggagtgttacaaagcttctacacacatttgacgtcgaaaaataagtaatgcatcttttaacccgttaag 31392475  T
Q  192 atttgtaaatttt 204  Q
    ||||||| |||||    
T  31392476 atttgtagatttt 31392488  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 34221329 - 34221429
Alignment:
Q  99 caatcttagtctcaaatcatt---gaaggagtgctacaaggcttctacacacttttgacgttaagaaacagttaatgcatcttttaacacgtttacattt 195  Q
    |||||||  ||||||||||||   |||||| || || ||| ||||||||||| ||||||||||| |||||  ||||||||||||||||   |||||||||    
T  34221329 caatctttatctcaaatcattaaagaaggattgttagaagacttctacacacatttgacgttaataaacaagtaatgcatcttttaaccgatttacattt 34221428  T
Q  196 g 196  Q
    |    
T  34221429 g 34221429  T

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Target: scaffold0148 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 33902 - 33989
Alignment:
Q  99 caatcttagtctcaaatcattgaag---gagtgctacaaggcttctacacacttttgacgttaagaaacagttaatgcatcttttaac 183  Q
    ||||||| ||||||||||||||||    || || || |||| |||||||||| |||||||| ||||||||| ||||||||||||||||    
T  33902 caatctttgtctcaaatcattgaataatgattgttaaaaggtttctacacacatttgacgtcaagaaacaggtaatgcatcttttaac 33989  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 194
Target Start/End: Original strand, 7493691 - 7493785
Alignment:
Q  100 aatcttagtctcaaatcattgaaggagtgctacaaggcttctacacacttttgacgttaagaaacagttaatgcatcttttaacacgtttacatt 194  Q
    |||||| ||||||||||||| ||| | ||||| |||  |||||||| | ||| |||| |||||||   |||||||||||||||||| ||||||||    
T  7493691 aatcttggtctcaaatcatttaagaattgctaaaagatttctacactcatttaacgtcaagaaacgtgtaatgcatcttttaacacatttacatt 7493785  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 27656309 - 27656370
Alignment:
Q  142 acacacttttgacgttaagaaacagttaatgcatcttttaacacgtttacatttgtaaattt 203  Q
    |||||| |||||||| ||||||||  |||| ||||||||||  ||||||||||||| |||||    
T  27656309 acacacatttgacgtcaagaaacaagtaatacatcttttaaaccgtttacatttgtcaattt 27656370  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 21138345 - 21138401
Alignment:
Q  127 tgctacaaggcttctacacacttttgacgttaagaaacagttaatgcatcttttaac 183  Q
    ||||| |||| |||||||||| |||||| | ||||||||  ||||||||||||||||    
T  21138345 tgctagaaggtttctacacacatttgacatcaagaaacaagtaatgcatcttttaac 21138401  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 43346855 - 43346931
Alignment:
Q  120 gaaggagtgctacaaggcttctacacacttttgacgttaagaaacagttaatgcatcttttaacacgtttacatttg 196  Q
    |||||| ||||| |||| |||||||||  |||| ||| || |||||  ||||||||||||||||||||||| |||||    
T  43346855 gaaggattgctagaaggtttctacacatatttggcgtcaacaaacaagtaatgcatcttttaacacgtttaaatttg 43346931  T

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