View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4442_low_2 (Length: 459)
Name: NF4442_low_2
Description: NF4442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4442_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 24 - 443
Target Start/End: Original strand, 28775541 - 28775960
Alignment:
| Q |
24 |
caactgatttggcaacgcattattggatgcatgtgtaaaaattttgtacactaaagatgtatataaattaaactctaaaaatattagaagcaaaagcaac |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28775541 |
caactgatttggcaacgcattattggatgcatgtgtaaaacttttgtacactaaagatgtatataaattaaactcaaaaaatattagaagcaaaagcaac |
28775640 |
T |
|
| Q |
124 |
tcactcacctttcaataaacagcgcacaccttccttggaggatgtattagcagcttctgcaatcctagctagatccctttgtaatgtgcgtcccatctca |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28775641 |
tcactcacctttcaataaacagcgcacaccttccttggaggatgtattagcagcttctgcaatcctagctagatccctttgtaatgtgcatcccatctca |
28775740 |
T |
|
| Q |
224 |
tccaacattccaaccttaaacaacagacacaaaaacatttacaatgtcttagagatattacagtacacactgtcattgcacagacaagaatagatgtttt |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28775741 |
tccaacattccaaccttaaacaacagacacaaaaacatttacaatgtcttagagatattacagtacacactgtcattgcacagacaagaatagatgtttt |
28775840 |
T |
|
| Q |
324 |
tgttaacaaacctgaagcttgagtacagtaactggagtatcattgttttctgtacaacgacatacaacataaatgacaaccattatgccaaccattaaca |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28775841 |
tgttaacaaacctgaagcttgagtacagtaactggagtatcattgttttctgtacaacgacatacaacataaatgacaaccattatgccaaccattaaca |
28775940 |
T |
|
| Q |
424 |
aaaacgcagacactccttca |
443 |
Q |
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| T |
28775941 |
aaaacgcagaccctccttca |
28775960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 126 - 266
Target Start/End: Original strand, 28767755 - 28767895
Alignment:
| Q |
126 |
actcacctttcaataaacagcgcacaccttccttggaggatgtattagcagcttctgcaatcctagctagatccctttgtaatgtgcgtcccatctcatc |
225 |
Q |
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||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||| | |
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| T |
28767755 |
actcacctttcaataaattgcagacaccttctcgagaggatgtattagcagcttctgcaatcctagctagatccctttgtattgtgtttcccacctcaac |
28767854 |
T |
|
| Q |
226 |
caacattccaaccttaaacaacagacacaaaaacatttaca |
266 |
Q |
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|||||||||||||||||||||||| | ||||||||||||| |
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| T |
28767855 |
caacattccaaccttaaacaacaggaataaaaacatttaca |
28767895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 1018580 - 1018649
Alignment:
| Q |
28 |
tgatttggcaacgcattattggatgcatgtgtaaaaattttgtacactaaagatgtatataaattaaact |
97 |
Q |
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| T |
1018580 |
tgatgtggcaacccattattggatgcatgtgtaaaacatttgtacactgacagtgtatataaattaaact |
1018649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 30602061 - 30601991
Alignment:
| Q |
28 |
tgatttggcaacgcattattggatgcatgtgtaaaaattttgtacactaaagatgtatataaattaaactct |
99 |
Q |
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| T |
30602061 |
tgatgtggcaacacatcattg-atgcatgtgtaaaacttttatacactaacgttgtatataagttaaactct |
30601991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 33723527 - 33723487
Alignment:
| Q |
59 |
taaaaattttgtacactaaagatgtatataaattaaactct |
99 |
Q |
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| T |
33723527 |
taaaacttttgtacactgacgatgtatataaattaaactct |
33723487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 34423492 - 34423428
Alignment:
| Q |
33 |
tggcaacgcattattggatgcatgtgtaaaaattttgtacactaaagatgtatataaattaaact |
97 |
Q |
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||||||| ||| ||| ||||||||||||||| |||| |||| | | |||||||||||||||||| |
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| T |
34423492 |
tggcaacacatcattagatgcatgtgtaaaacttttatacattgattatgtatataaattaaact |
34423428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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