View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4442_low_4 (Length: 352)
Name: NF4442_low_4
Description: NF4442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4442_low_4 |
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| [»] chr1 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 13897521 - 13897854
Alignment:
| Q |
19 |
caaccaaccagaaaaaccagcttaaagcaactgaagaagtgtctctcccagctaatatgaaatttacacaaatatccctcaaaaacttatctgaataaga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13897521 |
caaccaaccagaaaaaccagcttaaagcaactgaagaagtgtctctcccagctaatatgaaatttacacaaatatccctcaaaaacttatctgaataaga |
13897620 |
T |
|
| Q |
119 |
ctttccattctcatccttaagcctcataaacacagttaacaaatccgatttttccttattgtcttcattttgcaaagaaagttctttctttctttccctt |
218 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13897621 |
ctttccattctcatccttaagcctcatgaacacagttaacaaatccgatttttccttattgtcttcattttgcaaagaaagttctttctttcttgccctt |
13897720 |
T |
|
| Q |
219 |
ataacattctcagcaaattcatcaactttttgtattgttttcttgagctttctttccatacctaagttaagaaacctcatagccttccatacacaaaccg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13897721 |
ataacattctcagcaaattcatcaactttttgtattgatttcttgagctttctttccatacctaagttaagaaacctcatagccttccatacacaaaccg |
13897820 |
T |
|
| Q |
319 |
gcatgacaaatcgaaacaaagtagcttctgttgc |
352 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
13897821 |
gcatgacaaatcgaaacaaagtagcttctgttgc |
13897854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 24 - 352
Target Start/End: Complemental strand, 13887684 - 13887350
Alignment:
| Q |
24 |
aaccagaaaaaccagcttaaagcaactgaagaagtgtctctcccagctaatatgaaatttacacaaatatccctcaaaaacttatctgaataagactttc |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| |||||||||||||||| ||||| |
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| T |
13887684 |
aaccagaaaaaccagcttaaagcaactgaagaagtgtctctcccagctaatataaaacttacacatatatccctcaagaacttatctgaataagcctttc |
13887585 |
T |
|
| Q |
124 |
cattctcatccttaagcctcataaacacagttaacaaatccgatttttccttattgtct------tcattttgcaaagaaagttctttctttctttccct |
217 |
Q |
| |
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|||||||||| |||||| |||||||||||||||||||||| |||||| ||||| ||| |||| || |||||||||||||||||||||| |||| |
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| T |
13887584 |
cattctcatctttaagcttcataaacacagttaacaaatctgattttcgcttatcatcttccatatcatgttccaaagaaagttctttctttcttgccct |
13887485 |
T |
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| Q |
218 |
tataacattctcagcaaattcatcaactttttgtattgttttcttgagctttctttccatacctaagttaagaaacctcatagccttccatacacaaacc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13887484 |
tataacattctcagcaaattcatcaactttttgtattgattccttcaactttctctccatacctaagttaagaaacctcatagccttccatacacaaact |
13887385 |
T |
|
| Q |
318 |
ggcatgacaaatcgaaacaaagtagcttctgttgc |
352 |
Q |
| |
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||| ||||||||||| |||||| ||||| ||||| |
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| T |
13887384 |
ggcgcgacaaatcgaagcaaagttgcttcggttgc |
13887350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 23 - 315
Target Start/End: Original strand, 7295556 - 7295853
Alignment:
| Q |
23 |
caaccagaaaaaccagcttaaagcaact---gaagaagtgtctctcccagctaatatgaaatttacacaaatatccctcaaaaacttatctgaataagac |
119 |
Q |
| |
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||||||||||| || || ||||||||| ||||||||||||||||| |||||||||||||| | ||| |||||||||| | ||||||||| || || |
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| T |
7295556 |
caaccagaaaagccgcctcaaagcaactaaagaagaagtgtctctcccggctaatatgaaattcaaacatatatccctcaca--cttatctgagtatgaa |
7295653 |
T |
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| Q |
120 |
tttccattctcatccttaagcctcataaacacagttaacaaatccgatttttccttattgtcttcattttgcaaagaaagttctttctttctttccctta |
219 |
Q |
| |
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|||||||||||||| |||||||||| |||||||||||||||| ||||||||||||| |||| |||||||||||||||||| ||||||||| |||||| |
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| T |
7295654 |
attccattctcatccgtaagcctcattaacacagttaacaaatttgatttttccttatcatcttaattttgcaaagaaagttccttctttcttgccctta |
7295753 |
T |
|
| Q |
220 |
taacattctcagcaaattcatcaactttttgtattgttttctt--gagctttctttccatacctaagttaag--aaacctcatagccttccatacacaaa |
315 |
Q |
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||| ||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||| |||| ||||||| ||||| ||||||| |
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| T |
7295754 |
taatattctcagcaaattcatcagctttttgtattgttttcttaaaagctttcttgtcatacctaagttaagaaaaacgtcatagctttccacacacaaa |
7295853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 7291699 - 7291746
Alignment:
| Q |
105 |
ttatctgaataagactttccattctcatccttaagcctcataaacaca |
152 |
Q |
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| T |
7291699 |
ttatctgaatatgaattttcattctcatccttaagcctcataaacaca |
7291746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 1034578 - 1034911
Alignment:
| Q |
19 |
caaccaaccagaaaaaccagcttaaagcaactgaagaagtgtctctcccagctaatatgaaatttacacaaatatccctcaaaaacttatctgaataaga |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034578 |
caaccaaccagaaaaaccagctcaaagcaactgaagaagtgtctctcccagctaatataaaatttacacaaatatccctcaaaaacttatctgaataaga |
1034677 |
T |
|
| Q |
119 |
ctttccattctcatccttaagcctcataaacacagttaacaaatccgatttttccttattgtcttcattttgcaaagaaagttctttctttctttccctt |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
1034678 |
ctttccattctcatccttaagcctcataaacacagttaacaaatccgatttttccttatcgtcttcattttgcaaagaaagttctttctttcttgccctt |
1034777 |
T |
|
| Q |
219 |
ataacattctcagcaaattcatcaactttttgtattgttttcttgagctttctttccatacctaagttaagaaacctcatagccttccatacacaaaccg |
318 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
1034778 |
ataacattctcagcaaattcatcaactttttgtatggatttcttaagctttctttccatacctaagttaagaaacctcatagctttccatacacaaatcg |
1034877 |
T |
|
| Q |
319 |
gcatgacaaatcgaaacaaagtagcttctgttgc |
352 |
Q |
| |
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||| |||||||||||||||| ||||||||||||| |
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| T |
1034878 |
gcacgacaaatcgaaacaaaatagcttctgttgc |
1034911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 298
Target Start/End: Original strand, 28666863 - 28667137
Alignment:
| Q |
24 |
aaccagaaaaaccagcttaaagcaactgaagaagtgtctctcccagctaatatgaaatttacacaaatatccctcaaaaacttatctgaataagactttc |
123 |
Q |
| |
|
||||| |||||||| || ||||| || |||||||||||||||||||||| ||| ||||| ||||| |||||||||| ||||||||||||||||| ||| |
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| T |
28666863 |
aaccaaaaaaaccaactcaaagccacagaagaagtgtctctcccagctagtataaaattcacacatatatccctcagaaacttatctgaataagcacttc |
28666962 |
T |
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| Q |
124 |
cattctcatccttaagcctcataaacacagttaacaaatccgatttttccttattgtcttcattttgcaaagaaagttctttctttctttcccttataac |
223 |
Q |
| |
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||||||||||||| | | ||||||| |||||||||||||| || ||| || || || ||| || |||||| ||||| || ||||| |||||| || |
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| T |
28666963 |
cattctcatccttcatcttcataaaaacagttaacaaatctgacctttgtttcttttcatcaacttccaaagatagttccttttttctagtccttatgac |
28667062 |
T |
|
| Q |
224 |
attctcagcaaattcatcaactttttgtattgttttcttgagctttctttccatacctaagttaagaaacctcat |
298 |
Q |
| |
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|||| |||||||||||||| || |||| ||||||||| |||||||| | |||||||||||||| |||||| |
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| T |
28667063 |
attcattgcaaattcatcaacccctttaattgatttcttgagttttctttctacacctaagttaagaagcctcat |
28667137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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