View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4442_low_6 (Length: 321)
Name: NF4442_low_6
Description: NF4442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4442_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 302
Target Start/End: Original strand, 34609170 - 34609460
Alignment:
| Q |
12 |
agatgaagaagcagaggttgagtagatcagtgtcacgtttttccagatcggttcagcaaccacttcccgttgttgtgcctggagaaggttttagggattc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34609170 |
agatgaagaagcagaggttgagtagatcagtgtcacgtttttccagatcggttcagcaaccacttcacgttgttgtgcctggagaaggttttagggattc |
34609269 |
T |
|
| Q |
112 |
tgctcaaaagatgaaggcaataaaacttgcaaagaaagcttctaagaagagaaacaaagctgctcgtcgcggagaagctgatagggttatagttaatctc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34609270 |
tgctcaaaagatgaaggcaataaaacttgcaaagaaagcttctaagaagagaaacaaagctgctcgtcgcggagaagctgatagggttatagttaatctc |
34609369 |
T |
|
| Q |
212 |
agaccgaagcacactcttgctggaaagcgccccaagggaaaagctcaccaccgctgatgaaataattggtaattttgttctttggtatcac |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34609370 |
agaccgaagcacactcttgctggaaagcgccccaagggaaaagctcaccaccgctgatgaaataattggtaatgttgttctttggtatcac |
34609460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 32397555 - 32397631
Alignment:
| Q |
92 |
ggagaaggttttagggattctgctcaaaagatgaaggcaataaaacttgcaaagaaagcttctaagaagagaaacaa |
168 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || ||||| |||||||| ||| | | || |||||||||||||| |
|
|
| T |
32397555 |
ggagaaggccttagggattctgctcaaaagatcaaagcaatcaaacttgcgaagggatcatccaagaagagaaacaa |
32397631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 83 - 168
Target Start/End: Original strand, 6130900 - 6130985
Alignment:
| Q |
83 |
gttgtgcctggagaaggttttagggattctgctcaaaagatgaaggcaataaaacttgcaaagaaagcttctaagaagagaaacaa |
168 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||| || ||||| |||||||| ||| | |||| |||||||||||||| |
|
|
| T |
6130900 |
gttgttcctggagaaggccttagggattctgctcaaaagatcaaagcaattaaacttgcgaagggatcttccaagaagagaaacaa |
6130985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University