View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4442_low_8 (Length: 260)
Name: NF4442_low_8
Description: NF4442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4442_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 13897861 - 13898114
Alignment:
| Q |
1 |
aaaagctgcagcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13897861 |
aaaagctgcagcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaac |
13897960 |
T |
|
| Q |
101 |
aaaatatcttgaagatctattgcaacatttttcttcaatgatgattctaagacaggtatgagcctattgttcacaagctcaaaaattgactcaattgtta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13897961 |
aaaatatcttgaagatctattgcaacatttttcttcaatgatgattctaagacaggtatgagcctattgttcacaagctcaaaaattgacttaattgtta |
13898060 |
T |
|
| Q |
201 |
acttcctaaaatttgtcgaatgaaactcgatactcgctattttcctttgcttct |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13898061 |
acttcctaaaatttgtcgaatgaaactcgatactcgctattttcctttgtttct |
13898114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 13887333 - 13887090
Alignment:
| Q |
11 |
gcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatctt |
110 |
Q |
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||||| || |||||||| |||||| |||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13887333 |
gcaaaaggtatttcaggtaaatgaagttgcaaacaagaaggatcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatctt |
13887234 |
T |
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| Q |
111 |
gaagatctattgcaacatttttcttcaatgatgattctaagacaggtatgagcctattgttcacaagctcaaaaattgactcaattgttaacttcctaaa |
210 |
Q |
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| T |
13887233 |
gaagatcgatggaaaccgatttcttcaacgatgaatctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcctaaa |
13887134 |
T |
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| Q |
211 |
atttgtcgaatgaaactcgatactcgctattttcctttgcttct |
254 |
Q |
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||||| ||||||||||||||||||||| |||||||||| |||| |
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| T |
13887133 |
ctttgttgaatgaaactcgatactcgctgttttcctttgtttct |
13887090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 7295876 - 7295946
Alignment:
| Q |
11 |
gcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacatt |
81 |
Q |
| |
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||||| || |||||| |||||| |||||| |||||||||||||||||||||||| |||||| |||||||| |
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| T |
7295876 |
gcaaatggtatttcaaacaaatgtggttgtgaacaaccaggatcaacaccaaaagatatcatgcaaacatt |
7295946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 1034918 - 1035171
Alignment:
| Q |
1 |
aaaagctgcagcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaac |
100 |
Q |
| |
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||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1034918 |
aaaagctcctgcaaagggaatttcaggcaaatgaggttgtaagcaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcagc |
1035017 |
T |
|
| Q |
101 |
aaaatatcttgaagatctattgcaacatttttcttcaatgatgattctaagacaggtatgagcctattgttcacaagctcaaaaattgactcaattgtta |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1035018 |
aaaatatcttgaagatctatggcaacatttttcttcaatgataattctaagactggtatgagcctattgttcacaagctcaaaaattgactcatttgtta |
1035117 |
T |
|
| Q |
201 |
acttcctaaaatttgtcgaatgaaactcgatactcgctattttcctttgcttct |
254 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
1035118 |
actttctaaaatttgtcgaatgaaactcgatactagctattttcctttgtttct |
1035171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 28667238 - 28667315
Alignment:
| Q |
41 |
aaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatct |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | ||| |||||||||||| |
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| T |
28667238 |
aaacaaccaggatcaacaccaaaagctatcatacaaacattgtcaaaagttagtcttaaaagaatgtcttgaagatct |
28667315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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