View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4443-Insertion-1 (Length: 1068)
Name: NF4443-Insertion-1
Description: NF4443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4443-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 406 - 791
Target Start/End: Complemental strand, 50506067 - 50505682
Alignment:
| Q |
406 |
gaacttgtggatattcaagaggtctccgaacttgnnnnnnnttgtattcccttgcataagcaacaatgaatgatctcaggagacgagtaactagtgacac |
505 |
Q |
| |
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| T |
50506067 |
gaacttgtggatattcaagaggtctccgaacttgaaaaaaattgtattcccttgcataagcaacaatgaatgatctcaggagacgagtaactagtgacac |
50505968 |
T |
|
| Q |
506 |
aaagaaagctacaattatatgtagtatgaatcatagaagattgactaggtacagcatactgtatttcagaattttctttaaaatttaagcatatcaaacc |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50505967 |
aaagaaagctacaattatatgtagtatgaatcatagaagattgactaggtacagcatactgtatttcagaattttctttaaaatttaagcatatcaaacc |
50505868 |
T |
|
| Q |
606 |
tgcttaagcatatcaaaaccgcttaacaactagactgaaacgcttgccttgattagggactatgagaatttaagagagcgcataactgaatgaagaaacc |
705 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50505867 |
tgcttaagcatatcaaaaccgcttaacaactagactgaaacgcttgccttgattagggactatgagaatttaagagagcgcataactaaatgaagaaacc |
50505768 |
T |
|
| Q |
706 |
aaatataaacttgcccagcaacacacatcaatcactatcatacacgaacctaaaaatcaccgatatagtttatgcaatggttttaa |
791 |
Q |
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| T |
50505767 |
aaatataaacttgcccagcaacacacatcaatcactatcatacacgaacctaaaaatcaccgatatagtttatgcaatggttttaa |
50505682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 406
Target Start/End: Complemental strand, 50506501 - 50506108
Alignment:
| Q |
8 |
gggtagggcgtcaggagcttgagattgtgatggggaatgagcatatctccttcatcacaaccaagataggggctgttgcggaagttgaaaacagtgaggg |
107 |
Q |
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| T |
50506501 |
gggtagggcgtcaggagcttgagattgtgatggggaatgagcatatctccttcatcacaaccaagataggggctgttgcggaagttgaaaacagtgaggg |
50506402 |
T |
|
| Q |
108 |
gcttcaaaattttcactggcttgttcaggtgattgagcacattgactgttttgatgaatttatttctaggatcttctgtttgatgttttatttgttaatt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50506401 |
gcttcaaaattttcactggcttgttcaggtgattgagcacattgactgttttgatgaatttatttctaggatcttctgtttgatgttttatttgttaatt |
50506302 |
T |
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| Q |
208 |
ttgttcattgttagtaacatactgtttgtttaacctctctgaacatgattataagtattaaggagtcatattcctaaagcttcttatgactaaaggtttt |
307 |
Q |
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| T |
50506301 |
ttgtttattgttagtaacatactgttt-tttaacctctctgaacatgattataagtattaaggagtcatattcctaaag---cttatgactaaaggtttt |
50506206 |
T |
|
| Q |
308 |
gacttaatggttgtcattcacttccaacttgtctggctacaatgtgtaaaggtctataataagctttagatcaaatgagtttttataaaatcatttctg |
406 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50506205 |
gacttaatggttatcattcactttcaacttgtctggctacaatgtgtaaaggtctataataagc-ttagatcaaatgagtttttataaaatcatttctg |
50506108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 787 - 1040
Target Start/End: Complemental strand, 50505649 - 50505395
Alignment:
| Q |
787 |
tttaaaagtccgctgttatgcaatggtttcatcatgttttagataatgatttctatattccccatgaagccatgatatgttagtattttgtttagcttgt |
886 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50505649 |
tttaaaagtccgctgttatgcaatggtttcatcatgttttagataatgatttctatattccccatgaagccatgatatgttagtattttgtttagcttgt |
50505550 |
T |
|
| Q |
887 |
atttttcttatcagataatgcctttgcttattcctattagttatactaaatatttttgcaggatttgaggtgctttgttctcaatcttatttcacttcac |
986 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50505549 |
atttttcttatcagataatgcctttgcttattcctattagttatactaaatatttttgcaggatttgaggtgctttgttctcaatcttatttcacttcac |
50505450 |
T |
|
| Q |
987 |
ttcaagatcaagcttata-ctatataagatgttcacaattaaatatgagctcgtc |
1040 |
Q |
| |
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||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
50505449 |
ttcaagatcaagcctatacctatataagatgttcacaattaaatatgagctcgtc |
50505395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 941 - 1026
Target Start/End: Original strand, 55280797 - 55280877
Alignment:
| Q |
941 |
tttgcaggatttgaggtgctttgttctcaatcttatttcacttcacttcaagatcaagcttatactatataagatgttcacaatta |
1026 |
Q |
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|||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
55280797 |
tttgcaggatttgaagtgctttgtcttctctcttatttcacttcacttcaagatcaagc-----ctatataagatgttcccaatta |
55280877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 55280147 - 55280190
Alignment:
| Q |
16 |
cgtcaggagcttgagattgtgatggggaatgagcatatctcctt |
59 |
Q |
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| T |
55280147 |
cgtcaggaacttgagattgtgatggggaatgagcatatctcctt |
55280190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 3e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 813 - 1040
Target Start/End: Original strand, 28733612 - 28733837
Alignment:
| Q |
813 |
tttcatcatgttttagataatgatttctatattccccatgaagccatgatatgttagtattttgtttagcttgtatttttcttatcagataatgcctttg |
912 |
Q |
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| T |
28733612 |
tttcatcatattttagataatgatttatatattccccatgaggccatgatatgttagtattttgttttgcttatatttttcttatcagataatgtctttg |
28733711 |
T |
|
| Q |
913 |
cttattcctattagttatactaaatatttttgcaggatttgaggtgctttgttctcaatcttatttcacttcacttcaagatcaagcttata-ctatata |
1011 |
Q |
| |
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|||| ||||||| ||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
28733712 |
tttatgcctattaatta---taaacatttttgcaggatttgaagtgctttgttctcaatcttatttcacttcacttcaagatcaagcctatacctatata |
28733808 |
T |
|
| Q |
1012 |
agatgttcacaattaaatatgagctcgtc |
1040 |
Q |
| |
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||||||| || |||| |||||| ||||| |
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| T |
28733809 |
agatgtttactgttaattatgagttcgtc |
28733837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 609 - 789
Target Start/End: Original strand, 28733378 - 28733556
Alignment:
| Q |
609 |
ttaagcatatcaaaaccgcttaacaactagactgaaacgcttgccttgattagggactatgagaatttaagagagcgcataactgaatgaagaaaccaaa |
708 |
Q |
| |
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||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||| | ||||||| |||||||| |||||| |
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| T |
28733378 |
ttaagcatatcaaaaccgcttaacaactagaaagaaatgcttgccttgattaaggactatgagaatttaagagaacacataactaaatgaagagaccaaa |
28733477 |
T |
|
| Q |
709 |
tataaacttgcccagcaacacacatcaatcactatcatacacgaacctaaaaatcaccgatatagtttatgcaatggtttt |
789 |
Q |
| |
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|||||| |||| ||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
28733478 |
tataaa--tgcctagcaacatacatcaatcactatcatgcacgaacctaaaaatcaccaatatagtttatgcaatggtttt |
28733556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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