View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4443-Insertion-10 (Length: 299)
Name: NF4443-Insertion-10
Description: NF4443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4443-Insertion-10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 299
Target Start/End: Original strand, 9812031 - 9812322
Alignment:
| Q |
8 |
agatgcacagggactgatgctccagtcttaacacagcctggtttagaggcttactcaggcctgctgaagccgaagctggactatggtctgctcgtggctt |
107 |
Q |
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| T |
9812031 |
agatgcacagggactgatgatccagtcttaacacagcctggttcagaggcttactcaggcctgctgaagccgaagctggactatggtctgctcgtggctt |
9812130 |
T |
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| Q |
108 |
tggaatggctgcgcgaatggaggcagtatcatattatgataaaaaatgaattgtctgcaagtgatttaaacattgacttgtaagaaagatgccaatagtg |
207 |
Q |
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| T |
9812131 |
tggaatggctgcgcgaatggaggcagtatcatattatgataaaaaatgaattgtctgcgagtgattcaaacattgacttgtaagaaatatgccaatagtg |
9812230 |
T |
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| Q |
208 |
agctaaggagaattgttaaattttgtaaggctctattatctagcaaccgaaatttatatcagtaacagaaactacctaaatcttccctataa |
299 |
Q |
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| T |
9812231 |
agctaaggagaattgttaaattttgtgaggctctattatctagcaaccaaaatttatatcagtaacagaaactacctaaatcttccctataa |
9812322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 10 - 254
Target Start/End: Complemental strand, 14154835 - 14154592
Alignment:
| Q |
10 |
atgcacagggactgatgctccagtcttaacacagcctggtttagaggcttactcaggcctgctgaagccgaagctggactatggtctgctcgtggctttg |
109 |
Q |
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| T |
14154835 |
atgcacagggtctcatgctccagtctta-cacggcctggtttagaggcttactcaggcctgcggaagccgaagctggcctatggtctgctcgtggctttg |
14154737 |
T |
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| Q |
110 |
gaatggctgcgcgaatggaggcagtatcatattatgataaaaaatgaattgtctg-caagtgatttaaacattgacttgtaagaaagatgccaatagtga |
208 |
Q |
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| T |
14154736 |
gaatggctgcgcgaatggaggcagtataatattatgat-tgaaatgaattgtctgccaagtgattcaagctttgactagtaagaaagataccaatagtga |
14154638 |
T |
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| Q |
209 |
gctaaggagaattgttaaattttgtaaggctctattatctagcaac |
254 |
Q |
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| T |
14154637 |
gctagggagaattgttgaattttgtaaggttctgctatctagcaac |
14154592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 299
Target Start/End: Complemental strand, 14148424 - 14148381
Alignment:
| Q |
257 |
aaatttatatcagtaacagaaactac-ctaaatcttccctataa |
299 |
Q |
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| T |
14148424 |
aaatttatatcagtaacagaaactacactaaatcttccctataa |
14148381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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