View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4443-Insertion-2 (Length: 1047)

Name: NF4443-Insertion-2
Description: NF4443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4443-Insertion-2
NF4443-Insertion-2
[»] chr2 (15 HSPs)
chr2 (7-1047)||(43810235-43811277)
chr2 (895-992)||(34651996-34652094)
chr2 (924-1009)||(787374-787459)
chr2 (895-969)||(11488289-11488362)
chr2 (929-992)||(11344730-11344793)
chr2 (895-969)||(28933836-28933910)
chr2 (895-968)||(32821821-32821895)
chr2 (931-1009)||(38388736-38388814)
chr2 (897-969)||(1647250-1647323)
chr2 (924-1009)||(15120225-15120310)
chr2 (928-1009)||(32614891-32614972)
chr2 (924-968)||(2226984-2227028)
chr2 (926-989)||(33942194-33942259)
chr2 (951-996)||(22878167-22878212)
chr2 (901-969)||(40672793-40672862)
[»] chr4 (13 HSPs)
chr4 (642-731)||(3550323-3550412)
chr4 (924-993)||(4691890-4691959)
chr4 (895-996)||(2996585-2996687)
chr4 (895-996)||(24370907-24371011)
chr4 (902-993)||(20936188-20936280)
chr4 (895-979)||(37863927-37864011)
chr4 (907-968)||(24929517-24929579)
chr4 (946-992)||(27123312-27123358)
chr4 (924-962)||(30631998-30632036)
chr4 (895-1011)||(11264313-11264430)
chr4 (895-955)||(11802546-11802607)
chr4 (897-969)||(28614791-28614864)
chr4 (924-989)||(45128273-45128338)
[»] chr3 (13 HSPs)
chr3 (895-994)||(36646340-36646440)
chr3 (895-996)||(30573870-30573972)
chr3 (902-981)||(31010421-31010501)
chr3 (919-970)||(50004689-50004740)
chr3 (895-996)||(37273146-37273248)
chr3 (895-967)||(30923883-30923956)
chr3 (895-994)||(14548679-14548779)
chr3 (924-996)||(27294388-27294460)
chr3 (924-980)||(41724254-41724310)
chr3 (938-1009)||(44014741-44014812)
chr3 (895-996)||(2152134-2152236)
chr3 (895-992)||(41452535-41452633)
chr3 (931-1008)||(2304215-2304292)
[»] scaffold0003 (1 HSPs)
scaffold0003 (895-969)||(306338-306413)
[»] chr6 (12 HSPs)
chr6 (895-969)||(30523671-30523746)
chr6 (930-993)||(33737618-33737681)
chr6 (895-992)||(281808-281906)
chr6 (896-981)||(34939526-34939612)
chr6 (898-969)||(4420658-4420730)
chr6 (895-994)||(31686321-31686421)
chr6 (895-969)||(2117415-2117490)
chr6 (929-996)||(27595523-27595590)
chr6 (929-992)||(27693399-27693462)
chr6 (946-992)||(2460111-2460157)
chr6 (919-1009)||(3738106-3738196)
chr6 (931-993)||(32917246-32917308)
[»] chr5 (17 HSPs)
chr5 (895-1009)||(37611158-37611273)
chr5 (895-1009)||(37787888-37788003)
chr5 (924-996)||(29336672-29336744)
chr5 (895-969)||(17368688-17368763)
chr5 (924-994)||(12595674-12595744)
chr5 (900-996)||(28586722-28586819)
chr5 (924-995)||(10125675-10125746)
chr5 (895-992)||(32059318-32059417)
chr5 (895-969)||(37794681-37794755)
chr5 (924-990)||(37526161-37526227)
chr5 (924-990)||(37690598-37690664)
chr5 (924-969)||(7674690-7674735)
chr5 (924-1009)||(8089978-8090063)
chr5 (895-979)||(12242683-12242768)
chr5 (911-968)||(13264089-13264146)
chr5 (895-936)||(18543213-18543254)
chr5 (924-1005)||(32172695-32172776)
[»] chr7 (12 HSPs)
chr7 (919-996)||(36598312-36598389)
chr7 (902-993)||(3610699-3610791)
chr7 (924-996)||(25670542-25670614)
chr7 (925-993)||(36537951-36538019)
chr7 (924-996)||(48157076-48157148)
chr7 (897-968)||(9423578-9423650)
chr7 (898-996)||(33894642-33894741)
chr7 (924-962)||(11048069-11048107)
chr7 (900-969)||(12234872-12234942)
chr7 (924-969)||(19719048-19719093)
chr7 (895-943)||(24363610-24363659)
chr7 (897-1009)||(28165105-28165218)
[»] chr8 (14 HSPs)
chr8 (896-969)||(2458549-2458623)
chr8 (895-990)||(14949878-14949974)
chr8 (895-993)||(11569416-11569515)
chr8 (924-1006)||(31875541-31875623)
chr8 (895-983)||(8060681-8060770)
chr8 (897-956)||(20672764-20672824)
chr8 (924-996)||(30191097-30191169)
chr8 (938-1009)||(16162816-16162887)
chr8 (895-949)||(30277248-30277303)
chr8 (897-962)||(3254239-3254305)
chr8 (895-988)||(42215270-42215364)
chr8 (929-990)||(8629503-8629564)
chr8 (895-943)||(31862505-31862554)
chr8 (924-989)||(41442416-41442481)
[»] scaffold0147 (1 HSPs)
scaffold0147 (899-971)||(12685-12758)
[»] chr1 (16 HSPs)
chr1 (924-996)||(31517696-31517768)
chr1 (895-996)||(4699571-4699673)
chr1 (898-963)||(3223683-3223748)
chr1 (924-985)||(4481972-4482033)
chr1 (927-997)||(17628644-17628710)
chr1 (924-993)||(37593643-37593712)
chr1 (895-1009)||(10199351-10199466)
chr1 (895-1032)||(26461860-26461999)
chr1 (924-963)||(42397767-42397806)
chr1 (924-962)||(3070080-3070118)
chr1 (896-969)||(35925703-35925777)
chr1 (924-990)||(37811894-37811960)
chr1 (931-992)||(6976973-6977034)
chr1 (895-955)||(25479593-25479654)
chr1 (924-1005)||(29723531-29723612)
chr1 (924-993)||(33723341-33723410)
[»] scaffold0608 (1 HSPs)
scaffold0608 (924-985)||(9604-9665)
[»] scaffold0311 (1 HSPs)
scaffold0311 (924-992)||(10577-10645)


Alignment Details
Target: chr2 (Bit Score: 1003; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 1003; E-Value: 0
Query Start/End: Original strand, 7 - 1047
Target Start/End: Original strand, 43810235 - 43811277
Alignment:
Q  7 attttagactgatagtttgtagaaagtaaatttctataaaacaatggaaagtaaatactagttgaagttgtatgttacacacattagctggtaatgatgt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43810235 attttagactgatagtttgtagaaagtaaatttctataaaacaatggaaagtaaatactagttgaagttgtttgttacacacattagctggtaatgatgt 43810334  T
Q  107 ctacataaaaattattaccacaaaacaatagaaatgatacattgtggtatcataaaaaacctcaagttggtagctaccagactacaaatccttcagagga 206  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43810335 ctacataaaaattataaccacaaaacaatagaaatgatacattgtggtatcataaaaaacctcaagttggtagctaccagactacaaatccttcagagga 43810434  T
Q  207 aaaatctctgatagtttttcaattgattctgccattcctatgtacaaaaggagagaatcgatcaaaaacaaacaagactccgacgaattaaacatctcta 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43810435 aaaatctctgatagtttttcaattgattctgccattcctatgtacaaaaggagagaatcgatcaaaaacaaacaagactccgacgaattaaacatctcta 43810534  T
Q  307 tgaatctaagtacggtgctttaatgacgcgacgtcggacttctcatgactcccaatgtctcgaggtatgacaccttcttgttggtcactacggccggaag 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43810535 tgaatctaagtacggtgctttaatgacgcgacgtcggacttctcatgactcccaatgtctcgaggtatgacaccttcttgttggtcactacggccggaag 43810634  T
Q  407 tttttgttgctgcttggtttcaatgtctttgtaaaagtcatctgaaatttcaaaagggtccttcttcatgtctgtgtcgggttgatcagatccccaaccc 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43810635 tttttgttgctgcttggtttcaatgtctttgtaaaagtcatctgaaatttcaaaagggtccttcttcatgtctgtgtcgggttgatcagatccccaaccc 43810734  T
Q  507 atgaaatctgatagtgtcattgcaccaggcaattctgcgccgccattgtctatctcttctctaggactagggcatggctttgaaactgaaattctctttt 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  43810735 atgaaatctgatagtgtcattgcaccaggcaattctgcgccgccattatctatctcttctctaggactagggcatggctttgaaactgaaattctccttt 43810834  T
Q  607 ttccagatggattttgaacttgataatcgacttgaagtacatcatctattcttgaaagtactgtgaaggccaaactttctaatattcttgaatagctttc 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43810835 ttccagatggattttgaacttgataatcgacttgaagtacatcatctattcttgaaagtactgtgaaggccaaactttctaatattcttgaatagctttc 43810934  T
Q  707 aagaacggcgtgccctacatcctgcaaacatatataacaaatccattatcatgaaatgattatgttagatgatgcttccaacctcatcatattcatatat 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43810935 aagaacggcgtgccctacatcctgcaaacatatataacaaatccattatcatgaaatgattatgttagatgatgcttccaacctcatcatattcatatat 43811034  T
Q  807 gtattagattagcgcttattggataatcatttatcatacaagtacttacagataagctctttatataacaaaaatataaagtgaattgtcataagctatc 906  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43811035 gtattagattagcgcttattggataatcatttatcatacaagtacttacagataagctctttatataacaaaaatataaagtgaattgtcataagctatc 43811134  T
Q  907 ctagagaggttatgaactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgcttgagctagtag 1006  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43811135 ctagagaggttatgaactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgcttgagctagtag 43811234  T
Q  1007 at-agattatataaatcaatccaaac-atcatttatcatttaa 1047  Q
    || |||||| |||||||||||||||| |||||||| |||||||    
T  43811235 ataagattaaataaatcaatccaaacaatcatttaccatttaa 43811277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 895 - 992
Target Start/End: Complemental strand, 34652094 - 34651996
Alignment:
Q  895 tcataagctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagt 992  Q
    |||||||||||| | ||||| ||||| || |||| |||||||||||||||  |||| ||||||||||||| ||||| |||||| ||| || ||||||||    
T  34652094 tcataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtttctataagctttctccaaccgtctcacaagt 34651996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 924 - 1009
Target Start/End: Original strand, 787374 - 787459
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgcttgagctagtagata 1009  Q
    ||||||||||||||||||||  |||| |||||| ||||| |||||| | || |||||||| ||||||||||||  || ||||||||    
T  787374 taagctgaaaacagcttatggacatgtcataagctgttttcataagttctcacaaacagtgtcacaagtgcttatgccagtagata 787459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 895 - 969
Target Start/End: Original strand, 11488289 - 11488362
Alignment:
Q  895 tcataagctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataag 969  Q
    |||||||||||||| ||||| ||||| || ||||||||||||| |||||||||||  |||||||||||| ||||||    
T  11488289 tcataagctatcctggagagattatgcaaataagctgaaaacaacttatgaccat--cataagttgttttcataag 11488362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 929 - 992
Target Start/End: Complemental strand, 11344793 - 11344730
Alignment:
Q  929 tgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagt 992  Q
    ||||||||| |||||  |||| ||||||||||||||||||||| | ||||||||| ||||||||    
T  11344793 tgaaaacagtttatggacatgtcataagttgtttccataaggtctgtcaaacagtttcacaagt 11344730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 895 - 969
Target Start/End: Original strand, 28933836 - 28933910
Alignment:
Q  895 tcataagctatcctagagaggttat-gaactaagctgaaaacagcttatgaccatgccataagttgtttccataag 969  Q
    |||||||||||||||||||| | || ||| |||| ||||||||||| |||| ||||||||||||||||| ||||||    
T  28933836 tcataagctatcctagagagctgatagaaataagttgaaaacagct-atgaacatgccataagttgttttcataag 28933910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 895 - 968
Target Start/End: Original strand, 32821821 - 32821895
Alignment:
Q  895 tcataagctatcctagagaggttat-gaactaagctgaaaacagcttatgaccatgccataagttgtttccataa 968  Q
    ||||||||||||||| |||| |||| ||| ||| ||||||||||||||||  |||| ||||||||||||| ||||    
T  32821821 tcataagctatcctaaagagcttatagaaataaactgaaaacagcttatggacatgtcataagttgtttctataa 32821895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 931 - 1009
Target Start/End: Original strand, 38388736 - 38388814
Alignment:
Q  931 aaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgcttgagctagtagata 1009  Q
    ||||||| |||||| |||| ||||||||||| ||||||| | || ||||| ||  ||||||||||| ||||||||||||    
T  38388736 aaaacagtttatgaacatgtcataagttgttaccataagttctcccaaacggtcacacaagtgcttaagctagtagata 38388814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 897 - 969
Target Start/End: Original strand, 1647250 - 1647323
Alignment:
Q  897 ataagctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataag 969  Q
    |||||||||  ||||||| ||||| || ||||||||||||||||||||| |||| |||||| ||||| ||||||    
T  1647250 ataagctattatagagagcttatggaaataagctgaaaacagcttatgagcatgtcataagctgttttcataag 1647323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 924 - 1009
Target Start/End: Original strand, 15120225 - 15120310
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgcttgagctagtagata 1009  Q
    |||||| ||||||||| |||| |||| ||||||||||||||||||| | || |||||||  |||||| || ||  |||||||||||    
T  15120225 taagcttaaaacagctaatgaacatgtcataagttgtttccataagctctcccaaacagattcacaactgtttatgctagtagata 15120310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 928 - 1009
Target Start/End: Complemental strand, 32614972 - 32614891
Alignment:
Q  928 ctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgcttgagctagtagata 1009  Q
    ||||||||| | ||||| |||| ||||||||||||  ||||| | ||| | || |||||||||||||||| |||||||||||    
T  32614972 ctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacactgtatcacaagtgcttgtgctagtagata 32614891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 924 - 968
Target Start/End: Complemental strand, 2227028 - 2226984
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataa 968  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||    
T  2227028 taagctgaaaatagctaatgaacatgccataagttgtttccataa 2226984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 926 - 989
Target Start/End: Original strand, 33942194 - 33942259
Alignment:
Q  926 agctgaaaacagcttatgaccatgccataagttg--tttccataaggtttctcaaacagtatcaca 989  Q
    ||||||||||||||||||| |||| |||||||||  | |||||||| | ||||||||||| |||||    
T  33942194 agctgaaaacagcttatgaacatgtcataagttgtctctccataagctctctcaaacagtctcaca 33942259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 951 - 996
Target Start/End: Original strand, 22878167 - 22878212
Alignment:
Q  951 cataagttgtttccataaggtttctcaaacagtatcacaagtgctt 996  Q
    ||||| ||||||||||||||| || |||||||| ||||||||||||    
T  22878167 cataatttgtttccataaggtctcccaaacagtctcacaagtgctt 22878212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 901 - 969
Target Start/End: Complemental strand, 40672862 - 40672793
Alignment:
Q  901 gctatcctagagaggttatgaac-taagctgaaaacagcttatgaccatgccataagttgtttccataag 969  Q
    ||||| |||||||| |||||||  |||  ||||||||| |||||| |||||||| |||||||||||||||    
T  40672862 gctatactagagagcttatgaaaataaagtgaaaacagtttatgatcatgccatgagttgtttccataag 40672793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 2e-21; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 642 - 731
Target Start/End: Complemental strand, 3550412 - 3550323
Alignment:
Q  642 agtacatcatctattcttgaaagtactgtgaaggccaaactttctaatattcttgaatagctttcaagaacggcgtgccctacatcctgc 731  Q
    |||||||| |||| |||||| || ||||| ||||| |||||||| |||||||||||||||||||||||||| || |||||||||||||||    
T  3550412 agtacatcttctactcttgatagaactgtaaaggctaaactttccaatattcttgaatagctttcaagaacagcttgccctacatcctgc 3550323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 924 - 993
Target Start/End: Original strand, 4691890 - 4691959
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    ||||||||||||| | ||||  |||| ||||||||||||||||||| ||||||||| ||| |||||||||    
T  4691890 taagctgaaaacaacatatgggcatgtcataagttgtttccataagttttctcaaatagtctcacaagtg 4691959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 895 - 996
Target Start/End: Original strand, 2996585 - 2996687
Alignment:
Q  895 tcataagctatcctagagaggttatgaac-taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    |||||||||||| | |||||  ||||||  |||| |||||| ||||||||  |||| |||||||||||| |||||| | ||||||||||| ||| |||||    
T  2996585 tcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctctctcaaacagtctcaaaagtg 2996684  T
Q  994 ctt 996  Q
    |||    
T  2996685 ctt 2996687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 895 - 996
Target Start/End: Complemental strand, 24371011 - 24370907
Alignment:
Q  895 tcataagctatcctagagaggttat-gaactaagctgaaaacagcttatgac--catgccataagttgtttccataaggtttctcaaacagtatcacaag 991  Q
    ||||||||||||||| | || |||| ||| |||||||||||| |||||||    |||| ||||||||||||||||||| ||| ||||||| | ||||| |    
T  24371011 tcataagctatcctaaatagtttatagaaataagctgaaaacggcttatgtatacatgtcataagttgtttccataagttttatcaaacattctcacatg 24370912  T
Q  992 tgctt 996  Q
    |||||    
T  24370911 tgctt 24370907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 902 - 993
Target Start/End: Complemental strand, 20936280 - 20936188
Alignment:
Q  902 ctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    ||||||| ||||| ||||| || |||| |||||||||||||||| |||  |||||||||||| |||||| |||   ||||||| |||||||||    
T  20936280 ctatcctggagagattatggaaataaggtgaaaacagcttatgaacatatcataagttgttttcataagttttacgaaacagtgtcacaagtg 20936188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 895 - 979
Target Start/End: Complemental strand, 37864011 - 37863927
Alignment:
Q  895 tcataagctatcctagagaggttatgaactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaa 979  Q
    |||||||||||| | | ||||||||||| |||| |||||||| ||||||| | || |||||| ||||| |||||| | |||||||    
T  37864011 tcataagctatcttggtgaggttatgaattaaggtgaaaacaacttatgaacgtgtcataagctgttttcataagttctctcaaa 37863927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 907 - 968
Target Start/End: Original strand, 24929517 - 24929579
Alignment:
Q  907 ctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataa 968  Q
    |||||||| ||||| || |||||||||||||  |||||| ||||||||||| |||||||||||    
T  24929517 ctagagagcttatggaaataagctgaaaacaatttatgaacatgccataagctgtttccataa 24929579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 946 - 992
Target Start/End: Complemental strand, 27123358 - 27123312
Alignment:
Q  946 catgccataagttgtttccataaggtttctcaaacagtatcacaagt 992  Q
    |||| ||||||||||||||||||| | ||||||||||| ||||||||    
T  27123358 catgtcataagttgtttccataagctctctcaaacagtctcacaagt 27123312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 924 - 962
Target Start/End: Original strand, 30631998 - 30632036
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgttt 962  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  30631998 taagcttaaaacagcttatgaacatgccataagttgttt 30632036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 1011
Target Start/End: Original strand, 11264313 - 11264430
Alignment:
Q  895 tcataagctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    |||||||| ||||||||||| ||||| || |||| ||||||||| |||||  |||| ||||||||| ||| ||| | | || |||||||| |||||  ||    
T  11264313 tcataagccatcctagagagcttatggaaataagttgaaaacagtttatggacatgtcataagttgattctatatgctctcccaaacagtctcacagatg 11264412  T
Q  994 cttgagctagtagataga 1011  Q
     ||  |||||||||||||    
T  11264413 tttatgctagtagataga 11264430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 955
Target Start/End: Original strand, 11802546 - 11802607
Alignment:
Q  895 tcataagctatcctagagaggttatga-actaagctgaaaacagcttatgaccatgccataa 955  Q
    |||||||||||  | ||||| |||||| | |||||||||||||||||||| |||||||||||    
T  11802546 tcataagctattatggagagcttatgagaataagctgaaaacagcttatggccatgccataa 11802607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 897 - 969
Target Start/End: Complemental strand, 28614864 - 28614791
Alignment:
Q  897 ataagctatcctagagaggttatgaac-taagctgaaaacagcttatgaccatgccataagttgtttccataag 969  Q
    |||||||||||||||||  |||||||  ||||||||||| ||||||||   ||| ||||| |||||||||||||    
T  28614864 ataagctatcctagagaacttatgaaaataagctgaaaagagcttatggatatgtcataaattgtttccataag 28614791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 924 - 989
Target Start/End: Complemental strand, 45128338 - 45128273
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcaca 989  Q
    |||||||||||||||| |||  ||||  || ||||||||||||||| | ||||||||| |||||||    
T  45128338 taagctgaaaacagctcatggacatgatatcagttgtttccataagctctctcaaacaatatcaca 45128273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 895 - 994
Target Start/End: Complemental strand, 36646440 - 36646340
Alignment:
Q  895 tcataagctatcctagagaggttat-gaactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    |||||||||||||||||||| |||| ||| |||| |||||||||||||||  |||||||||||| ||||||||||| | || |||| ||| | |||||||    
T  36646440 tcataagctatcctagagagtttatagaaataagatgaaaacagcttatggacatgccataagtggtttccataagctctcccaaatagtcttacaagtg 36646341  T
Q  994 c 994  Q
    |    
T  36646340 c 36646340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 895 - 996
Target Start/End: Complemental strand, 30573972 - 30573870
Alignment:
Q  895 tcataagctatcctagagaggttatgaac-taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    |||||||||||| | ||||| | |||||| ||||||||||||||||||||| |||||||||| |||||| |||||| | || ||||||   |||||||||    
T  30573972 tcataagctatcttggagagctgatgaacataagctgaaaacagcttatgaacatgccataatttgttttcataagttctcacaaacaaactcacaagtg 30573873  T
Q  994 ctt 996  Q
    |||    
T  30573872 ctt 30573870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 902 - 981
Target Start/End: Original strand, 31010421 - 31010501
Alignment:
Q  902 ctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaaca 981  Q
    ||||| ||||||| ||||| || ||||||||||||||||||||  |||| ||||||||||||| ||||| |||| ||||||    
T  31010421 ctatcatagagagcttatggaattaagctgaaaacagcttatggacatgtcataagttgtttctataagctttcacaaaca 31010501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 919 - 970
Target Start/End: Original strand, 50004689 - 50004740
Alignment:
Q  919 tgaactaagctgaaaacagcttatgaccatgccataagttgtttccataagg 970  Q
    |||| |||||||||||||||||| || |||| ||||||||||||||||||||    
T  50004689 tgaaataagctgaaaacagcttaagaacatgtcataagttgtttccataagg 50004740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 895 - 996
Target Start/End: Original strand, 37273146 - 37273248
Alignment:
Q  895 tcataagctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    |||||||||||| | ||||  ||||| || |||| |||||||| ||||||  |||| ||||||||||||||||||| | || |||||||| |||| ||||    
T  37273146 tcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcaccagtg 37273245  T
Q  994 ctt 996  Q
    |||    
T  37273246 ctt 37273248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 895 - 967
Target Start/End: Complemental strand, 30923956 - 30923883
Alignment:
Q  895 tcataagctatcctagagaggttat-gaactaagctgaaaacagcttatgaccatgccataagttgtttccata 967  Q
    |||||| ||||||||||||| |||| ||| |||||||||||||||||||   |||| |||||| ||||||||||    
T  30923956 tcataacctatcctagagagtttatagaaataagctgaaaacagcttatagacatgtcataagctgtttccata 30923883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 895 - 994
Target Start/End: Complemental strand, 14548779 - 14548679
Alignment:
Q  895 tcataagctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    ||||||| ||| || ||||| ||||| || ||||||||||||||| ||| |  ||| |||| ||||||| |||||| | ||||||||||| |||||||||    
T  14548779 tcataagttattctggagagcttatggaaataagctgaaaacagcctattaaaatgtcatacgttgttttcataagctctctcaaacagtctcacaagtg 14548680  T
Q  994 c 994  Q
    |    
T  14548679 c 14548679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 924 - 996
Target Start/End: Original strand, 27294388 - 27294460
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgctt 996  Q
    |||| |||||||||||||||| |||  ||| ||||||||| || || | ||||||||||| ||||||||||||    
T  27294388 taagatgaaaacagcttatgagcatatcatgagttgtttctatgagctctctcaaacagtctcacaagtgctt 27294460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 924 - 980
Target Start/End: Original strand, 41724254 - 41724310
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaac 980  Q
    ||||||||||||| ||||||  |||| ||||||||||||||||||| |||| |||||    
T  41724254 taagctgaaaacaacttatggacatgtcataagttgtttccataagttttcacaaac 41724310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 938 - 1009
Target Start/End: Complemental strand, 44014812 - 44014741
Alignment:
Q  938 cttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgcttgagctagtagata 1009  Q
    ||||||| || | |||||| ||||| |||||| ||||||||||||| ||||||||| ||  |||||||||||    
T  44014812 cttatgaacaggtcataagctgttttcataagttttctcaaacagtctcacaagtgtttatgctagtagata 44014741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 895 - 996
Target Start/End: Complemental strand, 2152236 - 2152134
Alignment:
Q  895 tcataagctatcctagagaggttat-gaactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    |||||| ||||||| ||||| |||| |||  ||| ||||||||||||| || |||| |||||||||||| |||||  | ||||||  ||| |||||||||    
T  2152236 tcataaactatccttgagagcttatagaaacaagttgaaaacagcttacgaacatgtcataagttgttttcataaaatatctcaattagtctcacaagtg 2152137  T
Q  994 ctt 996  Q
    |||    
T  2152136 ctt 2152134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 895 - 992
Target Start/End: Original strand, 41452535 - 41452633
Alignment:
Q  895 tcataagctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagt 992  Q
    |||||||||||||| |||| ||| || || |||| ||||||||||||||   |||  ||||||||||||| ||||||| ||||||| | | ||||||||    
T  41452535 tcataagctatcctggagaagttgtggaaataaggtgaaaacagcttatagacatatcataagttgtttctataaggtctctcaaatactctcacaagt 41452633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 931 - 1008
Target Start/End: Complemental strand, 2304292 - 2304215
Alignment:
Q  931 aaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgcttgagctagtagat 1008  Q
    |||||||||||||| |||| ||||||||| || |||||  | ||||||| ||| ||||||||| ||  ||||||||||    
T  2304292 aaaacagcttatgaacatgtcataagttgctttcataatttctctcaaatagtttcacaagtgtttatgctagtagat 2304215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 895 - 969
Target Start/End: Original strand, 306338 - 306413
Alignment:
Q  895 tcataagctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataag 969  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||||||  |||| |||||| ||||||||||||    
T  306338 tcataagctatcctagagagcttatgtaagtaagctgaaaacagcttatgggcatgtcataagctgtttccataag 306413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 895 - 969
Target Start/End: Original strand, 30523671 - 30523746
Alignment:
Q  895 tcataagctatcctagagaggttat-gaactaagctgaaaacagcttatgaccatgccataagttgtttccataag 969  Q
    |||||||||||||| |||||||||| ||| | || |||||||||||||||| |||| |||||||||||||||||||    
T  30523671 tcataagctatccttgagaggttatagaaattagttgaaaacagcttatgaacatggcataagttgtttccataag 30523746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 930 - 993
Target Start/End: Original strand, 33737618 - 33737681
Alignment:
Q  930 gaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    ||||||||||||||| ||||||||||||||| | |||||| | |||||||||||  ||||||||    
T  33737618 gaaaacagcttatgaacatgccataagttgtgttcataagttctctcaaacagttgcacaagtg 33737681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 895 - 992
Target Start/End: Complemental strand, 281906 - 281808
Alignment:
Q  895 tcataagctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagt 992  Q
    |||||||||||||||||||| | ||| || ||||||||||||| |||||   |||| ||||||||| |||||| || | || |||||||| ||||||||    
T  281906 tcataagctatcctagagagctcatggaaataagctgaaaacaacttatagacatgtcataagttgcttccattagctctcccaaacagtctcacaagt 281808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 896 - 981
Target Start/End: Original strand, 34939526 - 34939612
Alignment:
Q  896 cataagctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaaca 981  Q
    |||||||||||||  |||||||||| || ||||||||||||| |||| |  | || ||||||||||||||||||| | |||||||||    
T  34939526 cataagctatcctgaagaggttatggaaataagctgaaaacaacttacggacgtgtcataagttgtttccataagctctctcaaaca 34939612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 898 - 969
Target Start/End: Original strand, 4420658 - 4420730
Alignment:
Q  898 taagctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataag 969  Q
    ||||||||| | ||||| ||||| || ||||||||||||||||||||| |||| ||||| ||||||| |||||    
T  4420658 taagctatcttggagagcttatggaaataagctgaaaacagcttatgaacatgtcataatttgtttctataag 4420730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 895 - 994
Target Start/End: Complemental strand, 31686421 - 31686321
Alignment:
Q  895 tcataagctatcctagagaggttatgaac-taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    |||||||||||||| ||||| ||| | || |||||||||||||| |||| | | || ||||||||||||  ||||| | ||||||||| | |||||||||    
T  31686421 tcataagctatcctggagagcttacggacataagctgaaaacagattataaacttgtcataagttgttttgataagttctctcaaacaatgtcacaagtg 31686322  T
Q  994 c 994  Q
    |    
T  31686321 c 31686321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 895 - 969
Target Start/End: Original strand, 2117415 - 2117490
Alignment:
Q  895 tcataagctatcctagagaggttat-gaactaagctgaaaacagcttatgaccatgccataagttgtttccataag 969  Q
    ||||||| |||||||||||| |||| ||| |||||| ||||||||||||   |||||||||| ||||||| |||||    
T  2117415 tcataagttatcctagagagcttattgaaataagctaaaaacagcttatagacatgccataaattgtttctataag 2117490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 929 - 996
Target Start/End: Complemental strand, 27595590 - 27595523
Alignment:
Q  929 tgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgctt 996  Q
    |||||| ||||||||| |||| ||||||||||||||||||  | || |||||||| ||| ||||||||    
T  27595590 tgaaaatagcttatgaacatgtcataagttgtttccataaattctcccaaacagtctcataagtgctt 27595523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 929 - 992
Target Start/End: Complemental strand, 27693462 - 27693399
Alignment:
Q  929 tgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagt 992  Q
    |||||| ||||||||| |||| ||||||||||||||||||  | ||||||| ||| ||||||||    
T  27693462 tgaaaatagcttatgaacatgtcataagttgtttccataaattctctcaaatagtctcacaagt 27693399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 946 - 992
Target Start/End: Complemental strand, 2460157 - 2460111
Alignment:
Q  946 catgccataagttgtttccataaggtttctcaaacagtatcacaagt 992  Q
    |||| ||||||||||||||||||| | ||||||||||| ||||||||    
T  2460157 catgtcataagttgtttccataagctctctcaaacagtctcacaagt 2460111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 919 - 1009
Target Start/End: Original strand, 3738106 - 3738196
Alignment:
Q  919 tgaactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgcttgagctagtagata 1009  Q
    |||| |||| ||||| |||||||||  |||| |||||| |||||||| ||| | | ||||||||| ||||||| ||||  |||||||||||    
T  3738106 tgaaataagttgaaagcagcttatggacatgtcataagctgtttccacaagatctttcaaacagtctcacaagggcttatgctagtagata 3738196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 931 - 993
Target Start/End: Original strand, 32917246 - 32917308
Alignment:
Q  931 aaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    |||| ||||||||  |||| ||||||||||||||||||| | || |||||||| |||||||||    
T  32917246 aaaaaagcttatggacatgtcataagttgtttccataagctctcccaaacagtctcacaagtg 32917308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 895 - 1009
Target Start/End: Complemental strand, 37611273 - 37611158
Alignment:
Q  895 tcataagctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    |||||||||||| | ||||| ||||| || ||| ||||||||||||||||| |||| || ||||||||| |||||| | ||||||||| | ||||||||     
T  37611273 tcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagta 37611174  T
Q  994 cttgagctagtagata 1009  Q
    |||| || ||||||||    
T  37611173 cttgtgccagtagata 37611158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 895 - 1009
Target Start/End: Complemental strand, 37788003 - 37787888
Alignment:
Q  895 tcataagctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    |||||||||||| | ||||| ||||| || ||| ||||||||||||||||| |||| || ||||||||| |||||| | ||||||||| | ||||||||     
T  37788003 tcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagta 37787904  T
Q  994 cttgagctagtagata 1009  Q
    |||| || ||||||||    
T  37787903 cttgtgccagtagata 37787888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 924 - 996
Target Start/End: Original strand, 29336672 - 29336744
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgctt 996  Q
    |||||||||||||  |||||   ||||||||||||||||||||||| | |||||| |||| ||||||||||||    
T  29336672 taagctgaaaacattttatgggtatgccataagttgtttccataagctctctcaatcagtctcacaagtgctt 29336744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 895 - 969
Target Start/End: Original strand, 17368688 - 17368763
Alignment:
Q  895 tcataagctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataag 969  Q
    |||||||||||| | ||||||||||| || |||||||||||| || ||||| |||| |||||||||||| ||||||    
T  17368688 tcataagctatcttggagaggttatggaaataagctgaaaactgcatatgaacatgtcataagttgttttcataag 17368763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 924 - 994
Target Start/End: Complemental strand, 12595744 - 12595674
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgc 994  Q
    |||||||||||| |||||||| ||||| ||||| ||||||| |||| | ||||||| ||| ||||||||||    
T  12595744 taagctgaaaacggcttatgaacatgcaataagctgtttccttaagctctctcaaatagtctcacaagtgc 12595674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 900 - 996
Target Start/End: Complemental strand, 28586819 - 28586722
Alignment:
Q  900 agctatcctagagaggttat-gaactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgctt 996  Q
    ||||||||||||||| |||| ||| |||||||||||||||||| |   ||| |||||| | |||||||||| | || |||||||| |||||| |||||    
T  28586819 agctatcctagagagcttatcgaaataagctgaaaacagcttacggatatgtcataagctatttccataagctctcccaaacagtttcacaaatgctt 28586722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 924 - 995
Target Start/End: Complemental strand, 10125746 - 10125675
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgct 995  Q
    ||||||||||||| ||||| | |||| |||||||||||| |||||| | ||||| ||| | |||||||||||    
T  10125746 taagctgaaaacaccttatcaacatgtcataagttgtttacataagttctctcagacaatgtcacaagtgct 10125675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 895 - 992
Target Start/End: Complemental strand, 32059417 - 32059318
Alignment:
Q  895 tcataagctatcctagagaggttat-gaactaagctgaaaacagcttatgaccatgcc-ataagttgtttccataaggtttctcaaacagtatcacaagt 992  Q
    |||||||||||||||||||  |||| ||| ||||||||||||| || |||| ||||||  |||| |||||| ||||  | ||||||| ||||||||||||    
T  32059417 tcataagctatcctagagaacttatcgaaataagctgaaaacaactcatgaacatgccgttaagctgtttcgataaactctctcaaatagtatcacaagt 32059318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 895 - 969
Target Start/End: Complemental strand, 37794755 - 37794681
Alignment:
Q  895 tcataagctatcctagagaggttat-gaactaagctgaaaacagcttatgaccatgccataagttgtttccataag 969  Q
    |||| |||||||||| |||| |||| ||| |||||| |||||||||||||| |||| |||||||||||| ||||||    
T  37794755 tcatgagctatcctatagag-ttatcgaaataagctcaaaacagcttatgaacatgtcataagttgttttcataag 37794681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 924 - 990
Target Start/End: Complemental strand, 37526227 - 37526161
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaa 990  Q
    ||||||||||||||||||| | |||| |||| ||||| | |||||| | ||||||||||| ||||||    
T  37526227 taagctgaaaacagcttattaacatgtcataggttgtattcataagctctctcaaacagtctcacaa 37526161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 924 - 990
Target Start/End: Complemental strand, 37690664 - 37690598
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaa 990  Q
    ||||||||||||||||||| | |||| |||| ||||| | |||||| | ||||||||||| ||||||    
T  37690664 taagctgaaaacagcttattaacatgtcataggttgtattcataagctctctcaaacagtctcacaa 37690598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 924 - 969
Target Start/End: Original strand, 7674690 - 7674735
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataag 969  Q
    ||||||||||||| ||||| | |||| |||||||||||||||||||    
T  7674690 taagctgaaaacaccttataaacatgtcataagttgtttccataag 7674735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 924 - 1009
Target Start/End: Original strand, 8089978 - 8090063
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgcttgagctagtagata 1009  Q
    |||||||||||||||||| ||  ||  |||||||||||| |||||| | ||||||| ||| || | |||||||| | |||||||||    
T  8089978 taagctgaaaacagcttaggaatatatcataagttgttttcataagctctctcaaatagtctcgcgagtgcttgtgttagtagata 8090063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 979
Target Start/End: Complemental strand, 12242768 - 12242683
Alignment:
Q  895 tcataagctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaa 979  Q
    |||||||||||| | ||||| ||||| || ||||||||||||| || |||  |||| |||||||| |||||||||| | |||||||    
T  12242768 tcataagctatcttggagagcttatggaagtaagctgaaaacaactaatgttcatgtcataagttttttccataagctctctcaaa 12242683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 911 - 968
Target Start/End: Complemental strand, 13264146 - 13264089
Alignment:
Q  911 agaggttatgaactaagctgaaaacagcttatgaccatgccataagttgtttccataa 968  Q
    |||| |||| || |||||||||||||||||||||  ||| |||||| |||||||||||    
T  13264146 agagcttataaaataagctgaaaacagcttatgaatatggcataagctgtttccataa 13264089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 936
Target Start/End: Complemental strand, 18543254 - 18543213
Alignment:
Q  895 tcataagctatcctagagaggttatgaactaagctgaaaaca 936  Q
    |||||||||||||| ||||| ||||||| |||||||||||||    
T  18543254 tcataagctatcctggagagcttatgaaataagctgaaaaca 18543213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 924 - 1005
Target Start/End: Original strand, 32172695 - 32172776
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgcttgagctagta 1005  Q
    |||||||||||  |||||||  |||| ||||||||||||||||||| | || |||||  | ||||||||||||  |||||||    
T  32172695 taagctgaaaatggcttatggacatgtcataagttgtttccataagctctcccaaactatctcacaagtgcttatgctagta 32172776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 919 - 996
Target Start/End: Complemental strand, 36598389 - 36598312
Alignment:
Q  919 tgaactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgctt 996  Q
    |||| ||||||||||||||||||||| |||| |||||| |||||||||||| | ||||||||| | |||||| |||||    
T  36598389 tgaaataagctgaaaacagcttatgaacatgtcataagatgtttccataagctctctcaaacaatctcacaattgctt 36598312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 902 - 993
Target Start/End: Complemental strand, 3610791 - 3610699
Alignment:
Q  902 ctatcctagagaggttat-gaactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    ||||||||||||| |||| ||| |||||||||||  |||||||  |||| ||| || ||||||||||||||||| |||| |||||||||||||    
T  3610791 ctatcctagagagcttatagaaataagctgaaaaaggcttatggacatgtcattagctgtttccataaggtttcccaaaaagtatcacaagtg 3610699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 924 - 996
Target Start/End: Complemental strand, 25670614 - 25670542
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgctt 996  Q
    |||||||||||||  |||| | |||| |||||||||||| |||||| ||||||||||||| ||||||| ||||    
T  25670614 taagctgaaaacaatttattaacatgtcataagttgttttcataagttttctcaaacagtctcacaagagctt 25670542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 925 - 993
Target Start/End: Original strand, 36537951 - 36538019
Alignment:
Q  925 aagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    ||||| |||||| ||||||| |||| ||||||||||||||||||| | ||||||||| | |||||||||    
T  36537951 aagctaaaaacaacttatgaacatgtcataagttgtttccataagttctctcaaacaatctcacaagtg 36538019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 924 - 996
Target Start/End: Complemental strand, 48157148 - 48157076
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgctt 996  Q
    ||||||||||||||||||||  |||| ||||||||||||| ||||| | || |||||||| |||||| |||||    
T  48157148 taagctgaaaacagcttatggacatggcataagttgtttctataagctctcccaaacagtctcacaaatgctt 48157076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 897 - 968
Target Start/End: Complemental strand, 9423650 - 9423578
Alignment:
Q  897 ataagctatcctagagaggttat-gaactaagctgaaaacagcttatgaccatgccataagttgtttccataa 968  Q
    |||||||||||| ||||| || | ||| ||||||||||||| ||||||| |||| ||||| ||||||||||||    
T  9423650 ataagctatcctggagagcttcttgaaataagctgaaaacaacttatgaacatgtcataaattgtttccataa 9423578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 898 - 996
Target Start/End: Original strand, 33894642 - 33894741
Alignment:
Q  898 taagctatcctagagaggttat-gaactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgctt 996  Q
    ||||||||||| || || |||| ||| ||||||||||||| ||||||  |||| |||| | ||||| |||||| | || |||||||| ||||||||||||    
T  33894642 taagctatcctggaaagtttattgaaataagctgaaaacaacttatggacatgtcatatgctgttttcataagctctcacaaacagtctcacaagtgctt 33894741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 924 - 962
Target Start/End: Original strand, 11048069 - 11048107
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgttt 962  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  11048069 taagctgaaaacagcttatgaacatgtcataagttgttt 11048107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 900 - 969
Target Start/End: Complemental strand, 12234942 - 12234872
Alignment:
Q  900 agctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataag 969  Q
    |||| |||||||||| ||||| || |||||||||||||||||||   |||| ||||||||||||| |||||    
T  12234942 agctttcctagagagcttatggaaataagctgaaaacagcttatagacatgtcataagttgtttctataag 12234872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 924 - 969
Target Start/End: Original strand, 19719048 - 19719093
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataag 969  Q
    |||||||||||||| |||||| |||| |||||||||||| ||||||    
T  19719048 taagctgaaaacagtttatgaacatgtcataagttgttttcataag 19719093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 943
Target Start/End: Complemental strand, 24363659 - 24363610
Alignment:
Q  895 tcataagctatcctagagaggttat-gaactaagctgaaaacagcttatg 943  Q
    |||||||||||||| |||||||||| ||| ||||||||||||| ||||||    
T  24363659 tcataagctatcctggagaggttatggaaataagctgaaaacaacttatg 24363610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 897 - 1009
Target Start/End: Original strand, 28165105 - 28165218
Alignment:
Q  897 ataagctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgct 995  Q
    |||||||||| | ||||| ||||| || |||| |||||||||||||||| || | | | || |||||||||||| | ||||||| ||| ||| |||||||    
T  28165105 ataagctatcatggagagcttatggaaataagttgaaaacagcttatgaacaggtcttgagctgtttccataagctatctcaaagagtctcataagtgct 28165204  T
Q  996 tgagctagtagata 1009  Q
    |  ||| |||||||    
T  28165205 tatgctggtagata 28165218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 896 - 969
Target Start/End: Complemental strand, 2458623 - 2458549
Alignment:
Q  896 cataagctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataag 969  Q
    ||||||||||||||||||| ||||| || ||| ||||||||||||||||| ||||||||||| ||| | ||||||    
T  2458623 cataagctatcctagagagcttatggaaataaactgaaaacagcttatgaacatgccataagctgtcttcataag 2458549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 895 - 990
Target Start/End: Original strand, 14949878 - 14949974
Alignment:
Q  895 tcataagctatcctagagaggttat-gaactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaa 990  Q
    ||||||||||||||| |||| |||| ||| ||||||||||||||||||||  |||| |||||||| ||| |||||| | ||  ||||||| ||||||    
T  14949878 tcataagctatcctaaagagattatagaaataagctgaaaacagcttatggacatgtcataagttattttcataagctctcctaaacagtctcacaa 14949974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 895 - 993
Target Start/End: Complemental strand, 11569515 - 11569416
Alignment:
Q  895 tcataagctatcctagagaggttatgaac-taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    |||||||||||| | ||||| || ||||  ||||||||||||| ||||||  |||| |||||| |||||||||||| | ||| ||||||| |||||||||    
T  11569515 tcataagctatcatggagagattttgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataagctctcttaaacagtctcacaagtg 11569416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 924 - 1006
Target Start/End: Complemental strand, 31875623 - 31875541
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgcttgagctagtag 1006  Q
    |||| ||||||  |||||||  |||| ||||||||||||||||||| ||||||||||||| |||| |||| ||  ||||||||    
T  31875623 taagttgaaaatggcttatggacatgtcataagttgtttccataagctttctcaaacagtgtcactagtgtttatgctagtag 31875541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 895 - 983
Target Start/End: Original strand, 8060681 - 8060770
Alignment:
Q  895 tcataagctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagt 983  Q
    |||||||| ||||||||||| ||||| || ||||||||||| | ||||||| | | |||||| |||||| |||||| | |||||||||||    
T  8060681 tcataagcaatcctagagagcttatggaaataagctgaaaataacttatgaactttccataatttgttttcataagctctctcaaacagt 8060770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 897 - 956
Target Start/End: Original strand, 20672764 - 20672824
Alignment:
Q  897 ataagctatcctagagaggttatgaac-taagctgaaaacagcttatgaccatgccataag 956  Q
    |||||||||||| ||||| |||||||  ||||||||||||||||||||| |||| ||||||    
T  20672764 ataagctatcctggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataag 20672824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 924 - 996
Target Start/End: Complemental strand, 30191169 - 30191097
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgctt 996  Q
    |||||||||||||  || ||| |||| ||||||||||||||||||| | || |||||||| | ||||||||||    
T  30191169 taagctgaaaacaagttttgaacatgtcataagttgtttccataagctctcccaaacagtctaacaagtgctt 30191097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 938 - 1009
Target Start/End: Original strand, 16162816 - 16162887
Alignment:
Q  938 cttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgcttgagctagtagata 1009  Q
    ||||||| || | |||||| ||||| |||||| ||||||||||||| ||||||||| ||  |||||||||||    
T  16162816 cttatgaacaggtcataagctgttttcataagttttctcaaacagtctcacaagtgtttatgctagtagata 16162887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 895 - 949
Target Start/End: Complemental strand, 30277303 - 30277248
Alignment:
Q  895 tcataagctatcctagagaggttat-gaactaagctgaaaacagcttatgaccatg 949  Q
    |||||||||||||||||||| |||| ||| ||||||||||||| |||||| |||||    
T  30277303 tcataagctatcctagagagtttatggaaataagctgaaaacaacttatggccatg 30277248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 897 - 962
Target Start/End: Original strand, 3254239 - 3254305
Alignment:
Q  897 ataagctatcctagagaggttat-gaactaagctgaaaacagcttatgaccatgccataagttgttt 962  Q
    ||||||||||||| ||||  ||| ||| ||||||||||||||||||||| |||| |||||| |||||    
T  3254239 ataagctatcctatagagtgtatagaaataagctgaaaacagcttatgaacatgtcataagctgttt 3254305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 895 - 988
Target Start/End: Complemental strand, 42215364 - 42215270
Alignment:
Q  895 tcataagctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcac 988  Q
    ||||| |||||||| ||||| ||||| || ||||||||||||||||||||| || | |||||| ||||| ||| || | || |||||||| ||||    
T  42215364 tcatatgctatcctggagagcttatgtaaataagctgaaaacagcttatgaacaagtcataagctgttttcattagttctcccaaacagtgtcac 42215270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 990
Target Start/End: Original strand, 8629503 - 8629564
Alignment:
Q  929 tgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaa 990  Q
    |||||||| ||||||| |||| |||||||||||| |||||| | |||||||| || ||||||    
T  8629503 tgaaaacaacttatgatcatgtcataagttgttttcataagttctctcaaacggtctcacaa 8629564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 943
Target Start/End: Original strand, 31862505 - 31862554
Alignment:
Q  895 tcataagctatcctagagaggttatg-aactaagctgaaaacagcttatg 943  Q
    ||||||| |||||||||||| ||||| || ||||||||||||||||||||    
T  31862505 tcataagttatcctagagagcttatgaaaataagctgaaaacagcttatg 31862554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 924 - 989
Target Start/End: Complemental strand, 41442481 - 41442416
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcaca 989  Q
    ||||||||||||||| ||||| |||| ||||| |||||| |||||| | | ||||||||| |||||    
T  41442481 taagctgaaaacagcatatgaacatgtcataaattgttttcataagttctgtcaaacagtctcaca 41442416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 899 - 971
Target Start/End: Complemental strand, 12758 - 12685
Alignment:
Q  899 aagctatcctagagaggttatgaa-ctaagctgaaaacagcttatgaccatgccataagttgtttccataaggt 971  Q
    |||||||| ||||||| ||||| | |||||||||||||| ||||||  |||| |||||||||||||||||||||    
T  12758 aagctatcttagagagcttatggagctaagctgaaaacaacttatggacatgtcataagttgtttccataaggt 12685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000003; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 924 - 996
Target Start/End: Complemental strand, 31517768 - 31517696
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgctt 996  Q
    ||||||||||||||||||||| |||| ||| ||||||||  ||||| | || |||||||| ||||||||||||    
T  31517768 taagctgaaaacagcttatgaacatgtcatgagttgttttgataagttctcccaaacagtctcacaagtgctt 31517696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 895 - 996
Target Start/End: Complemental strand, 4699673 - 4699571
Alignment:
Q  895 tcataagctatcctagagaggttat-gaactaagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    |||||| ||||||  ||||| |||| ||| |||||| |||||||||||||| |||| |||||||||||| ||||||  || |||||  |||||||||| |    
T  4699673 tcataaactatcccggagagcttatagaaataagctaaaaacagcttatgaacatgtcataagttgttttcataagtattatcaaattgtatcacaagcg 4699574  T
Q  994 ctt 996  Q
    |||    
T  4699573 ctt 4699571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 898 - 963
Target Start/End: Original strand, 3223683 - 3223748
Alignment:
Q  898 taagctatcctagagaggttatgaactaagctgaaaacagcttatgaccatgccataagttgtttc 963  Q
    |||| |||||||| ||| ||||||| ||||||||||||| ||||| | |||| |||||||||||||    
T  3223683 taagttatcctagcgagcttatgaaataagctgaaaacaacttataaacatgtcataagttgtttc 3223748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 924 - 985
Target Start/End: Original strand, 4481972 - 4482033
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtat 985  Q
    |||||| |||||||||||||| ||||  ||||||||||| |||||| | |||||||||||||    
T  4481972 taagctaaaaacagcttatgaacatgtaataagttgttttcataagttctctcaaacagtat 4482033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 927 - 997
Target Start/End: Original strand, 17628644 - 17628710
Alignment:
Q  927 gctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgcttg 997  Q
    |||||||||||||||||  |||| |||||||||||||||||||    ||| |||||| |||||||||||||    
T  17628644 gctgaaaacagcttatggacatgtcataagttgtttccataag----ctccaacagtctcacaagtgcttg 17628710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 924 - 993
Target Start/End: Complemental strand, 37593712 - 37593643
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    ||||||||||||||||||||| |||| |||||||||| | ||| || |||| |||||||| | |||||||    
T  37593712 taagctgaaaacagcttatgaacatgtcataagttgtgttcattagttttcccaaacagtctaacaagtg 37593643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 895 - 1009
Target Start/End: Complemental strand, 10199466 - 10199351
Alignment:
Q  895 tcataagctatcctagagaggttatgaac-taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    |||||||||||  ||||||| |||||||  ||||||||||||| ||||||| |||| |||||| | ||| ||| || | || |||| ||| |||||||||    
T  10199466 tcataagctattttagagagcttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttcatgagttctcccaaatagtgtcacaagtg 10199367  T
Q  994 cttgagctagtagata 1009  Q
    |||  | |||||||||    
T  10199366 cttatgttagtagata 10199351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 895 - 1032
Target Start/End: Complemental strand, 26461999 - 26461860
Alignment:
Q  895 tcataagctatcctagagaggttatgaac-taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    ||||||||||||||  |||| |||||||  ||||||||||||| |  |||  ||||||||| ||||||| |||||| | |  |||||||||| | |||||    
T  26461999 tcataagctatcctgcagagcttatgaaaataagctgaaaacaacccatggacatgccatatgttgttttcataagctctgccaaacagtataaaaagtg 26461900  T
Q  994 cttgagctagtagata-gattatataaatcaatccaaaca 1032  Q
    |||| || | |||||| | | ||||||| |||||||||||    
T  26461899 cttgtgccaatagatatgctcatataaaccaatccaaaca 26461860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 924 - 963
Target Start/End: Original strand, 42397767 - 42397806
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttc 963  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  42397767 taagctgaaaacaacttatgaacatgccataagttgtttc 42397806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 924 - 962
Target Start/End: Complemental strand, 3070118 - 3070080
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgttt 962  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  3070118 taagctgaaaacagcttatgaacatgtcataagttgttt 3070080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 896 - 969
Target Start/End: Original strand, 35925703 - 35925777
Alignment:
Q  896 cataagctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataagttgtttccataag 969  Q
    ||||||||||| | ||||| ||||| || |||| |||||||||||||||| |||| |||||| ||||| ||||||    
T  35925703 cataagctatcatggagagtttatggaaataagttgaaaacagcttatgaacatgtcataagctgttttcataag 35925777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 924 - 990
Target Start/End: Original strand, 37811894 - 37811960
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaa 990  Q
    |||| ||||||||| |||||| |||| |||||| ||||| |||||| | |||||| |||||||||||    
T  37811894 taagttgaaaacagtttatgaacatgtcataagctgttttcataagttctctcaaccagtatcacaa 37811960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 931 - 992
Target Start/End: Original strand, 6976973 - 6977034
Alignment:
Q  931 aaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagt 992  Q
    |||||||||||||| |||| |||||||||||||||| || | || |||||||  ||||||||    
T  6976973 aaaacagcttatgaacatgtcataagttgtttccattagctctcgcaaacagcctcacaagt 6977034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 955
Target Start/End: Original strand, 25479593 - 25479654
Alignment:
Q  895 tcataagctatcctagagaggttatg-aactaagctgaaaacagcttatgaccatgccataa 955  Q
    |||||||||||||||||||| ||||| || ||||||||||||| || |||| |||| |||||    
T  25479593 tcataagctatcctagagagcttatgaaaataagctgaaaacaactaatgaacatgtcataa 25479654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 924 - 1005
Target Start/End: Original strand, 29723531 - 29723612
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtgcttgagctagta 1005  Q
    |||| ||||||||| |||||  |||| |||||| ||||||||| || | | |||||| |||||||||||||||  |||||||    
T  29723531 taagttgaaaacagtttatggacatgtcataagctgtttccattagttctttcaaactgtatcacaagtgcttatgctagta 29723612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 924 - 993
Target Start/End: Complemental strand, 33723410 - 33723341
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagtg 993  Q
    ||||||||||||| || |||| |||| ||| || |||||||||||| |||| ||| |||| |||||||||    
T  33723410 taagctgaaaacatctcatgaacatgtcatgagctgtttccataagttttcccaagcagtctcacaagtg 33723341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 924 - 985
Target Start/End: Complemental strand, 9665 - 9604
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtat 985  Q
    |||||| |||||||||||||| ||||  ||||||||||| |||||| | |||||||||||||    
T  9665 taagctaaaaacagcttatgaacatgtaataagttgttttcataagttctctcaaacagtat 9604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 924 - 992
Target Start/End: Complemental strand, 10645 - 10577
Alignment:
Q  924 taagctgaaaacagcttatgaccatgccataagttgtttccataaggtttctcaaacagtatcacaagt 992  Q
    ||||||||||||| ||||||  |||| ||| |||||||| |||||| ||| ||||||||| ||||||||    
T  10645 taagctgaaaacaacttatggacatgtcattagttgtttacataagctttgtcaaacagtctcacaagt 10577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University