View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4443-Insertion-3 (Length: 1029)

Name: NF4443-Insertion-3
Description: NF4443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4443-Insertion-3
NF4443-Insertion-3
[»] chr1 (26 HSPs)
chr1 (75-847)||(39914639-39915406)
chr1 (911-1029)||(39914413-39914537)
chr1 (771-859)||(38748743-38748831)
chr1 (745-854)||(39156231-39156340)
chr1 (769-846)||(47187856-47187933)
chr1 (771-859)||(8794412-8794500)
chr1 (773-854)||(604458-604537)
chr1 (739-853)||(34232735-34232849)
chr1 (746-854)||(14746227-14746334)
chr1 (769-854)||(2864137-2864221)
chr1 (770-846)||(8365498-8365574)
chr1 (804-854)||(43397042-43397092)
chr1 (745-846)||(39150552-39150653)
chr1 (789-846)||(44329610-44329667)
chr1 (769-859)||(4851267-4851356)
chr1 (746-848)||(34409705-34409807)
chr1 (764-854)||(42791169-42791259)
chr1 (770-823)||(8372990-8373043)
chr1 (770-854)||(38491216-38491300)
chr1 (769-849)||(45640541-45640621)
chr1 (771-834)||(40460770-40460833)
chr1 (775-854)||(44829272-44829351)
chr1 (769-859)||(3982259-3982349)
chr1 (796-854)||(26811259-26811317)
chr1 (769-859)||(32562375-32562465)
chr1 (745-846)||(48022388-48022489)
[»] chr8 (22 HSPs)
chr8 (745-854)||(28207594-28207703)
chr8 (771-859)||(33013041-33013129)
chr8 (769-853)||(4384163-4384247)
chr8 (757-857)||(12684518-12684618)
chr8 (770-848)||(13028124-13028202)
chr8 (769-854)||(167871-167956)
chr8 (770-859)||(33949572-33949661)
chr8 (770-859)||(37813424-37813514)
chr8 (769-854)||(27801253-27801338)
chr8 (766-854)||(1369886-1369974)
chr8 (770-851)||(16723225-16723306)
chr8 (745-854)||(42636393-42636502)
chr8 (777-835)||(2250356-2250414)
chr8 (769-850)||(9024482-9024563)
chr8 (769-854)||(24695741-24695826)
chr8 (789-854)||(35901945-35902010)
chr8 (770-854)||(2258118-2258202)
chr8 (796-854)||(1135182-1135240)
chr8 (796-854)||(3520835-3520893)
chr8 (776-837)||(2888764-2888825)
chr8 (776-837)||(3146037-3146098)
chr8 (796-837)||(5588981-5589022)
[»] chr7 (16 HSPs)
chr7 (770-909)||(39320954-39321093)
chr7 (770-859)||(35731282-35731371)
chr7 (781-859)||(3692883-3692961)
chr7 (770-854)||(28770472-28770556)
chr7 (745-832)||(44537311-44537398)
chr7 (745-854)||(27123244-27123353)
chr7 (746-858)||(44592837-44592949)
chr7 (787-854)||(7653588-7653655)
chr7 (769-859)||(27337692-27337781)
chr7 (769-854)||(7968586-7968671)
chr7 (745-854)||(28663166-28663273)
chr7 (745-854)||(43234760-43234869)
chr7 (773-849)||(21727438-21727514)
chr7 (769-829)||(32699804-32699863)
chr7 (796-854)||(42936028-42936085)
chr7 (786-859)||(18801051-18801124)
[»] chr6 (11 HSPs)
chr6 (770-857)||(1840978-1841065)
chr6 (769-859)||(19293475-19293565)
chr6 (770-846)||(28874394-28874470)
chr6 (769-854)||(2692457-2692542)
chr6 (746-854)||(9762774-9762881)
chr6 (770-834)||(11720925-11720989)
chr6 (791-854)||(32823693-32823756)
chr6 (819-857)||(30801785-30801823)
chr6 (804-854)||(31855083-31855133)
chr6 (769-854)||(26669306-26669391)
chr6 (745-817)||(30509286-30509358)
[»] chr4 (23 HSPs)
chr4 (733-854)||(45900176-45900297)
chr4 (745-854)||(7444412-7444522)
chr4 (770-859)||(37138184-37138273)
chr4 (769-854)||(51834908-51834993)
chr4 (778-854)||(31429280-31429356)
chr4 (769-856)||(51736348-51736435)
chr4 (769-854)||(7852571-7852656)
chr4 (745-854)||(8297841-8297950)
chr4 (745-854)||(49400583-49400691)
chr4 (777-854)||(50341894-50341971)
chr4 (771-854)||(35777726-35777809)
chr4 (770-846)||(20394633-20394709)
chr4 (775-854)||(50426989-50427068)
chr4 (769-859)||(25115285-25115375)
chr4 (769-854)||(37383782-37383866)
chr4 (751-837)||(48337532-48337618)
chr4 (804-854)||(53014233-53014283)
chr4 (805-854)||(42222985-42223034)
chr4 (770-854)||(27953068-27953151)
chr4 (787-854)||(34391734-34391801)
chr4 (804-859)||(43969207-43969262)
chr4 (771-854)||(47995764-47995847)
chr4 (770-854)||(49084427-49084512)
[»] chr5 (15 HSPs)
chr5 (745-859)||(15720037-15720151)
chr5 (769-854)||(7719198-7719283)
chr5 (770-854)||(30501167-30501251)
chr5 (770-854)||(30541510-30541594)
chr5 (773-854)||(9276607-9276688)
chr5 (770-854)||(16667319-16667403)
chr5 (770-854)||(30104799-30104883)
chr5 (771-854)||(2918624-2918707)
chr5 (748-909)||(8221096-8221256)
chr5 (771-854)||(18229629-18229712)
chr5 (769-817)||(141866-141914)
chr5 (770-849)||(13480013-13480093)
chr5 (787-854)||(3140826-3140893)
chr5 (769-854)||(34899163-34899248)
chr5 (769-854)||(39558794-39558879)
[»] chr2 (19 HSPs)
chr2 (770-854)||(1334911-1334995)
chr2 (769-894)||(41933125-41933250)
chr2 (745-854)||(4762319-4762428)
chr2 (775-854)||(19890216-19890295)
chr2 (771-844)||(40789703-40789777)
chr2 (769-854)||(15505538-15505623)
chr2 (745-854)||(38533373-38533480)
chr2 (770-854)||(9448981-9449064)
chr2 (773-855)||(31452372-31452454)
chr2 (770-854)||(19514866-19514950)
chr2 (773-859)||(14295626-14295712)
chr2 (793-854)||(43617514-43617575)
chr2 (780-859)||(9173728-9173808)
chr2 (771-854)||(31017335-31017418)
chr2 (773-909)||(37993076-37993212)
chr2 (745-859)||(11944895-11945009)
chr2 (770-859)||(13538391-13538480)
chr2 (770-859)||(20064906-20064995)
chr2 (769-854)||(38533896-38533980)
[»] chr3 (13 HSPs)
chr3 (770-859)||(39551878-39551966)
chr3 (768-886)||(47638888-47639006)
chr3 (769-837)||(48180215-48180283)
chr3 (785-854)||(45988253-45988321)
chr3 (745-854)||(42846032-42846143)
chr3 (769-859)||(52638180-52638270)
chr3 (770-835)||(49362400-49362465)
chr3 (735-791)||(46547872-46547928)
chr3 (804-859)||(16663006-16663061)
chr3 (775-854)||(51351277-51351356)
chr3 (770-854)||(26900050-26900136)
chr3 (796-837)||(22730530-22730571)
chr3 (769-854)||(52249320-52249405)
[»] scaffold0419 (1 HSPs)
scaffold0419 (770-846)||(1060-1136)
[»] scaffold1444 (2 HSPs)
scaffold1444 (787-859)||(954-1026)
scaffold1444 (801-859)||(1726-1784)
[»] scaffold0204 (1 HSPs)
scaffold0204 (751-837)||(25054-25140)
[»] scaffold0036 (1 HSPs)
scaffold0036 (771-846)||(62560-62635)
[»] scaffold0268 (1 HSPs)
scaffold0268 (801-859)||(20270-20328)
[»] scaffold0119 (1 HSPs)
scaffold0119 (769-854)||(1402-1487)


Alignment Details
Target: chr1 (Bit Score: 627; Significance: 0; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 75 - 847
Target Start/End: Complemental strand, 39915406 - 39914639
Alignment:
Q  75 ttctcgatatcagttcttagagttaatggtaatttgctgaaatgaatttcatatgagttgaccctatttcacttgtattttagtgtaggagtatttgttt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39915406 ttctcgatatcagttcttagagttaatggtaatttgctgaaatgaatttcatatgagttgaccctatttcacttgtattttagtgtaggagtatttgttt 39915307  T
Q  175 ttctgaaatcaatattatggaaagaggtaccttaaacaacgctacacaataaagtctaagccagttccactcgagggatagagagattcccggagaaccg 274  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39915306 ttctgaaatcaatattatgggaagaggtaccttaaacaacgctacacaataaagtctaagccagttccactcgagggatagagagattcccggagaaccg 39915207  T
Q  275 agcgtgggcttaatattaaacccatcaattactagtatctcaatttattaatttatctttaaatcttaatcacgatatattgttcataataaaatgagtt 374  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39915206 agcgtgggcttaatattaaacccattaattactagtatctcaatttattaatttatctttaaatcttaatcacgatatatggttcataataaaatgagtt 39915107  T
Q  375 atacgtgtaggacaactaagcatgttctatatattgttttactaagtaatgagtat-aaaaatgtttggtgtacatccatatccatatgaatggagttac 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  39915106 atacgtgtaggacaactaagcatgttctatatattgttttactaagtaatgagtatgaaaaatgtttggtgtacatccatatccatatgaatgtagttac 39915007  T
Q  474 atcttcagagataaagaaataaaagatagatatgataggaatagtgcttgagataaaatgaagtgctg--aaaagatgtnnnnnnnnnnntcaaagtgtt 571  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||| || |           ||||||||||    
T  39915006 atcttgagagataaagaaataaaagatagatatgataggaatagtgctcgagataaaatgaagtgctgaaaaaatatataaaaaaaaaaatcaaagtgtt 39914907  T
Q  572 caaatatcattattattaaatgattatttacttatttttgtaagttgaactcatctatacttgttaagactctcttataatcttattgaatgaaacaaga 671  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  39914906 caaatatcattattattaaatgattatttacttatttttgtaagttgaactcatctatacttgttaagactc--------tcttattgaatgaaacaaga 39914815  T
Q  672 tattaacataaatgtatgttaaggatacatgtcttttttaacacaaaatggtgcattcattattttaaaatgtgtcttgttaacgggtgctcctgataca 771  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | |  |||    
T  39914814 tattaacataaatgtatgttaaggatacatgtcttttttaacacaaaatggtgcattcattattttaaaatgggtcttgttaacgagtgcttccgggaca 39914715  T
Q  772 ctctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacac 847  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||    
T  39914714 ctctttaagcataccaaatttaacaattgttcttttaaaaagtcaactattacaattttcaatgcactcaatacac 39914639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 911 - 1029
Target Start/End: Complemental strand, 39914537 - 39914413
Alignment:
Q  911 caaagctctcggacatcaatgacatgcaagtgctg----cagtatatacatttagaggatttt-aattttattctagtactagtacatgtct-aaactgt 1004  Q
    |||||||||||||||||||||||||| |||||||     |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  39914537 caaagctctcggacatcaatgacatgtaagtgcttgctacagtatatacatttagaggatttttaattttattctagtactagtacatgtctaaaactgt 39914438  T
Q  1005 atgtacgtatatctaattctagcta 1029  Q
    |||||||||||||||||||||||||    
T  39914437 atgtacgtatatctaattctagcta 39914413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 771 - 859
Target Start/End: Complemental strand, 38748831 - 38748743
Alignment:
Q  771 actctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    |||||||||||||||||||||||  |||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||    
T  38748831 actctttaagcataccaaatttagaaattattcttttaaaaagtcaactattataattttcaatgcactcaatacacaacttttcataa 38748743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 745 - 854
Target Start/End: Original strand, 39156231 - 39156340
Alignment:
Q  745 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 844  Q
    |||||||||||| |||| ||||| |||||||||||||||   |||||||  |||| |||||||||||| ||||||| || ||||||||||||| ||||||    
T  39156231 gtcttgttaacgagtgcccctgagacactctttaagcatcaaaaatttagtaattattcttttaaaaagtcaactactacaatttccaatgcattcaata 39156330  T
Q  845 cacaactttt 854  Q
    ||||| ||||    
T  39156331 cacaattttt 39156340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 769 - 846
Target Start/End: Complemental strand, 47187933 - 47187856
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaataca 846  Q
    ||||||||||||||| |||||||||  |||| ||| ||||||||||||||||||||||||||||||||| ||||||||    
T  47187933 acactctttaagcatcccaaatttagtaattattcatttaaaaaatcaactattataatttccaatgcattcaataca 47187856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 771 - 859
Target Start/End: Original strand, 8794412 - 8794500
Alignment:
Q  771 actctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    ||||||||||||| | |||||||  |||| |||||||||||| |||||||||||||||| |||||||||| ||||||||||||| ||||    
T  8794412 actctttaagcatcctaaatttagtaattattcttttaaaaagtcaactattataattttcaatgcactccatacacaactttttataa 8794500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 773 - 854
Target Start/End: Complemental strand, 604537 - 604458
Alignment:
Q  773 tctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||||||||||||||||||| |  | ||||||||| |||| ||||||||||||||||||||||||||||||| ||||    
T  604537 tctttaagcataccaaatttaacaaat--tattttaaaaagtcaattattataatttccaatgcactcaatacacaattttt 604458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 739 - 853
Target Start/End: Complemental strand, 34232849 - 34232735
Alignment:
Q  739 aaatgtgtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcac 838  Q
    ||||| |||||||||||| ||||||  |  ||||||||||||||| |  |||||| ||||| |||||||||||| |||||||||| ||||| ||||||      
T  34232849 aaatgggtcttgttaacgagtgctcacgggacactctttaagcatccttaatttagcaattattcttttaaaaagtcaactattacaattttcaatgctt 34232750  T
Q  839 tcaatacacaacttt 853  Q
    |||||||||||||||    
T  34232749 tcaatacacaacttt 34232735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 746 - 854
Target Start/End: Complemental strand, 14746334 - 14746227
Alignment:
Q  746 tcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatac 845  Q
    ||||||||||| |||| ||||  |||||||||||| |||||||||||| ||||| || | |||||||||||||| ||||||||| ||||||  | |||||    
T  14746334 tcttgttaacgagtgcccctgg-acactctttaagtataccaaatttagcaattattttcttaaaaaatcaactgttataattttcaatgctatgaatac 14746236  T
Q  846 acaactttt 854  Q
    |||||||||    
T  14746235 acaactttt 14746227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 769 - 854
Target Start/End: Original strand, 2864137 - 2864221
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||||| ||| ||| |||||  |||| |||||| ||||| |||||||||| ||||||||||||| ||||||||||||||||    
T  2864137 acactctttaaacatcccatatttaggaattattcttt-aaaaagtcaactattacaatttccaatgcattcaatacacaactttt 2864221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 770 - 846
Target Start/End: Original strand, 8365498 - 8365574
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaataca 846  Q
    |||||||||| ||| | |||||||| |||| ||||||||||||||||||||||| ||| | ||||||| ||||||||    
T  8365498 cactctttaaacatcctaaatttaataattattcttttaaaaaatcaactattacaatcttcaatgcattcaataca 8365574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 804 - 854
Target Start/End: Complemental strand, 43397092 - 43397042
Alignment:
Q  804 ttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||| |||||||||||||||||||||||| | ||||||||||||||    
T  43397092 ttttaaaaagtcaactattataatttccaatgcatttaatacacaactttt 43397042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 745 - 846
Target Start/End: Original strand, 39150552 - 39150653
Alignment:
Q  745 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 844  Q
    |||||||||||| |||| || |   |||||||||||||| | |||||||  |||| ||||| |||||| |||||||||| ||||| ||||||| ||||||    
T  39150552 gtcttgttaacgagtgcccccggggcactctttaagcatcctaaatttagtaattattcttgtaaaaagtcaactattacaatttacaatgcattcaata 39150651  T
Q  845 ca 846  Q
    ||    
T  39150652 ca 39150653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 789 - 846
Target Start/End: Original strand, 44329610 - 44329667
Alignment:
Q  789 atttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaataca 846  Q
    |||||| |||| |||||||||||| |||||||||||||||| ||||||| ||||||||    
T  44329610 atttaataattattcttttaaaaagtcaactattataattttcaatgcattcaataca 44329667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 769 - 859
Target Start/End: Complemental strand, 4851356 - 4851267
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    |||||||||||||||  ||| ||||| |||| ||| |||||||| |||||||||| |||||| |||||||| | ||| |||||||| ||||    
T  4851356 acactctttaagcatgtcaattttaaaaattattc-tttaaaaagtcaactattacaatttcaaatgcacttactacccaacttttcataa 4851267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 746 - 848
Target Start/End: Original strand, 34409705 - 34409807
Alignment:
Q  746 tcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatac 845  Q
    ||||||||||| ||||  | || | |||||||||||||   |||||||  |||| || ||||  |||||||| ||||||||||||||||||| |||||||    
T  34409705 tcttgttaacgagtgcgtccgagatactctttaagcattttaaatttagtaattttttttttttaaaatcaattattataatttccaatgcattcaatac 34409804  T
Q  846 aca 848  Q
    |||    
T  34409805 aca 34409807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 764 - 854
Target Start/End: Complemental strand, 42791259 - 42791169
Alignment:
Q  764 ctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||| |||||||||||||||   ||||||||||||| || ||||||||| |||||||| |  ||||  |||||| |||||||||| |||||    
T  42791259 ctgagacactctttaagcatcttaaatttaacaattatttttttaaaaagtcaactatcactattttaaatgcattcaatacacagctttt 42791169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 770 - 823
Target Start/End: Original strand, 8372990 - 8373043
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactatta 823  Q
    |||||||||| ||| | |||||||| |||| |||||||||||||||||||||||    
T  8372990 cactctttaaacatcctaaatttaataattattcttttaaaaaatcaactatta 8373043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 770 - 854
Target Start/End: Original strand, 38491216 - 38491300
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||||| || || |||||||||  |||| || | ||||||| |||||||||| ||||| ||||||| ||||||||||| ||||    
T  38491216 cactctttcagaatcccaaatttagtaattattatgttaaaaagtcaactattacaatttacaatgcattcaatacacaattttt 38491300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 769 - 849
Target Start/End: Original strand, 45640541 - 45640621
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaa 849  Q
    ||||| || |||||| |||||||||| || | |||||| ||||| |||| ||||||||||| ||||||| ||| |||||||    
T  45640541 acacttttaaagcatcccaaatttaagaactattctttcaaaaagtcaattattataattttcaatgcattcattacacaa 45640621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 771 - 834
Target Start/End: Complemental strand, 40460833 - 40460770
Alignment:
Q  771 actctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaat 834  Q
    ||||||||||||| | |||||||| |||| ||| ||||||||||||| ||||| | ||||||||    
T  40460833 actctttaagcatccaaaatttaataattattcatttaaaaaatcaattattacagtttccaat 40460770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 775 - 854
Target Start/End: Original strand, 44829272 - 44829351
Alignment:
Q  775 tttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||| |||||||||  |||| |||||| ||||  |||||||||| |||||  ||| || ||||||||||||||||    
T  44829272 tttaagcatcccaaatttagtaattattctttaaaaaggtcaactattacaatttttaatacattcaatacacaactttt 44829351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 769 - 859
Target Start/End: Original strand, 3982259 - 3982349
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    |||||||||||  ||| ||||||||  |||| || ||  ||||| ||||||||||||||||  |||||| | |||| ||||||||||||||    
T  3982259 acactctttaaaaatatcaaatttagtaattatttttagaaaaagtcaactattataatttataatgcattgaatagacaacttttaataa 3982349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 796 - 854
Target Start/End: Complemental strand, 26811317 - 26811259
Alignment:
Q  796 aattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||| |||||||||||||| |||||||| |||||||||| ||  ||||| |||||||||    
T  26811317 aattattcttttaaaaaattaactattagaatttccaatacatacaatatacaactttt 26811259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 769 - 859
Target Start/End: Complemental strand, 32562465 - 32562375
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    |||||||||||| ||   |||||||  |||| || ||||||||| |||||||||| ||||| ||||||| | ||||||||| |||| ||||    
T  32562465 acactctttaagaatctaaaatttagtaattattattttaaaaattcaactattacaattttcaatgcagtgaatacacaattttttataa 32562375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 745 - 846
Target Start/End: Complemental strand, 48022489 - 48022388
Alignment:
Q  745 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 844  Q
    |||||||||||| |||| ||||    ||||||||||||| ||| |||||  |||| || ||||||||| | |||||||  ||||| ||||||| ||||||    
T  48022489 gtcttgttaacgagtgcccctgtggtactctttaagcatcccatatttagtaattattgttttaaaaagttaactattgcaattttcaatgcattcaata 48022390  T
Q  845 ca 846  Q
    ||    
T  48022389 ca 48022388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 5e-31; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 745 - 854
Target Start/End: Original strand, 28207594 - 28207703
Alignment:
Q  745 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 844  Q
    |||||||||||| |||| || || ||||||||||||||| ||||||||||||||  |||||||||||| |||||||||| ||||||||||||| ||||||    
T  28207594 gtcttgttaacgagtgcccccgagacactctttaagcatcccaaatttaacaataattcttttaaaaagtcaactattacaatttccaatgcattcaata 28207693  T
Q  845 cacaactttt 854  Q
    ||||||||||    
T  28207694 cacaactttt 28207703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 771 - 859
Target Start/End: Original strand, 33013041 - 33013129
Alignment:
Q  771 actctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| |||||||||||||||||| ||||    
T  33013041 actctttaagcataccaaatttaacaattattcttttaaaaagtcaactattacaatttccaatgtactcaatacacaacttttcataa 33013129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 769 - 853
Target Start/End: Complemental strand, 4384247 - 4384163
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttt 853  Q
    ||||||||||||||  | |||||||  |||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  4384247 acactctttaagcaccctaaatttagtaattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaacttt 4384163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 757 - 857
Target Start/End: Complemental strand, 12684618 - 12684518
Alignment:
Q  757 ggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaa 856  Q
    |||||||| || ||||||||||||||| |||||||||| |||| |||||| ||| |||||||||||| |||||| |||||| ||| |||| |||||||||    
T  12684618 ggtgctcccgaaacactctttaagcattccaaatttaataattattctttcaaagaatcaactattacaatttctaatgcattcattacaaaacttttaa 12684519  T
Q  857 t 857  Q
    |    
T  12684518 t 12684518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 770 - 848
Target Start/End: Original strand, 13028124 - 13028202
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacaca 848  Q
    |||||||||||||| | ||||||| ||||| ||||||||||||||| | ||||| ||||| ||||||||||||||||||    
T  13028124 cactctttaagcattctaaatttatcaattattcttttaaaaaatctattattacaattttcaatgcactcaatacaca 13028202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 769 - 854
Target Start/End: Complemental strand, 167956 - 167871
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||||||||| ||  ||||||||| |||| |||||||||||| |||||||||||||||||||||||| | | |||| |||||||    
T  167956 acactctttaagtatctcaaatttaaaaattattcttttaaaaagtcaactattataatttccaatgcatttattacataactttt 167871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 770 - 859
Target Start/End: Complemental strand, 33949661 - 33949572
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    |||||||||||||||  |||||||  || | || ||||||||| |||||||||| |||||| ||||||||||||||||||||||| ||||    
T  33949661 cactctttaagcatattaaatttagtaagtattgttttaaaaattcaactattacaatttcaaatgcactcaatacacaacttttcataa 33949572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 770 - 859
Target Start/End: Complemental strand, 37813514 - 37813424
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaa-tcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    ||||||||||| || |||||||||  |||| ||||||||||||| ||||| |||| ||||||||||||| | |||||||||||||| ||||    
T  37813514 cactctttaaggatcccaaatttagtaattattcttttaaaaaagtcaaccattacaatttccaatgcattgaatacacaacttttcataa 37813424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 769 - 854
Target Start/End: Complemental strand, 27801338 - 27801253
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||||| ||| | |||||||  |||| |||||||||||| |||||||||| ||||| ||||||| ||| ||||||||||||    
T  27801338 acactctttaatcattctaaatttagtaattattcttttaaaaagtcaactattacaattttcaatgcattcattacacaactttt 27801253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 766 - 854
Target Start/End: Complemental strand, 1369974 - 1369886
Alignment:
Q  766 gatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||| | ||||||||| | ||||||| ||||| |||||||||||| |||||||| | ||||||||||||| |||||| | |||||||    
T  1369974 gatacattatttaagcatcctaaatttagcaattattcttttaaaaagtcaactatcacaatttccaatgcattcaatagataactttt 1369886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 770 - 851
Target Start/End: Complemental strand, 16723306 - 16723225
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaact 851  Q
    |||||||||||||| ||||||||   |||| |||||||||||||||||||| || ||||| |||| || |||| ||||||||    
T  16723306 cactctttaagcatcccaaattttgtaattattcttttaaaaaatcaactaatacaattttcaatacattcaacacacaact 16723225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 745 - 854
Target Start/End: Complemental strand, 42636502 - 42636393
Alignment:
Q  745 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 844  Q
    |||||||||| | ||||||| |   |||||||||||||| |||||||||  |||| || ||  ||||| |||||||||| ||||| ||||||| | ||||    
T  42636502 gtcttgttaaggagtgctcccggggcactctttaagcatcccaaatttagtaattattattcaaaaaagtcaactattacaatttacaatgcatttaata 42636403  T
Q  845 cacaactttt 854  Q
    ||||||||||    
T  42636402 cacaactttt 42636393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 777 - 835
Target Start/End: Original strand, 2250356 - 2250414
Alignment:
Q  777 taagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatg 835  Q
    ||||||| |||||||||| |||| |||||||||||| ||||| |||||||||| |||||    
T  2250356 taagcatcccaaatttaataattattcttttaaaaagtcaaccattataattttcaatg 2250414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 769 - 850
Target Start/End: Original strand, 9024482 - 9024563
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaac 850  Q
    |||||||||||| | ||||||||||  |||| |||||| |||||||||||||||| |||||   ||||| | ||||||||||    
T  9024482 acactctttaagaaaaccaaatttagtaattattctttcaaaaaatcaactattacaattttttatgcattaaatacacaac 9024563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 769 - 854
Target Start/End: Original strand, 24695741 - 24695826
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||||||||| || |  ||||||  |||| || ||||||||| |||||||||| |||||| |||||| | ||||||||||||||    
T  24695741 acactctttaagaatccagaatttagtaattattattttaaaaagtcaactattacaatttctaatgcagtgaatacacaactttt 24695826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 789 - 854
Target Start/End: Original strand, 35901945 - 35902010
Alignment:
Q  789 atttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||| |||| || ||||||||| |||| ||||| ||||||||||||| |||||||| |||||||    
T  35901945 atttaataattatttttttaaaaagtcaattattacaatttccaatgcattcaatacagaactttt 35902010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 770 - 854
Target Start/End: Complemental strand, 2258202 - 2258118
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||||||||||| |||||||||| |||| |||||||||||| | ||  |||| |||||  |||| | | ||||||||||||||    
T  2258202 cactctttaagcatcccaaatttaataattattcttttaaaaagttaatcattacaatttttaatgtatttaatacacaactttt 2258118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 796 - 854
Target Start/End: Original strand, 1135182 - 1135240
Alignment:
Q  796 aattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||| |||||||||||| |||||||||| ||||| ||||| | |||||| |||||||||    
T  1135182 aattattcttttaaaaagtcaactattacaattttcaatgtattcaatatacaactttt 1135240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 796 - 854
Target Start/End: Complemental strand, 3520893 - 3520835
Alignment:
Q  796 aattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||| ||||||||||||||||||||||| | |||  |||||| |||||||| |||||||    
T  3520893 aattattcttttaaaaaatcaactattacagtttttaatgcattcaatacataactttt 3520835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 776 - 837
Target Start/End: Complemental strand, 2888825 - 2888764
Alignment:
Q  776 ttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgca 837  Q
    |||||||| ||| |||||  |||| || ||||||||| | ||||||||||||||||||||||    
T  2888825 ttaagcatcccatatttagtaattatttttttaaaaagttaactattataatttccaatgca 2888764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 776 - 837
Target Start/End: Original strand, 3146037 - 3146098
Alignment:
Q  776 ttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgca 837  Q
    |||||||| ||| |||||  |||| |||||||||||| | |||||||| |||||||||||||    
T  3146037 ttaagcatcccatatttagtaattattcttttaaaaagttaactattacaatttccaatgca 3146098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 796 - 837
Target Start/End: Original strand, 5588981 - 5589022
Alignment:
Q  796 aattgttcttttaaaaaatcaactattataatttccaatgca 837  Q
    |||| |||||||||||| |||||||||||||||| |||||||    
T  5588981 aattattcttttaaaaagtcaactattataattttcaatgca 5589022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 3e-29; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 770 - 909
Target Start/End: Complemental strand, 39321093 - 39320954
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataannnnnnnact 869  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| ||||| | |||||||||||||||||||||       |||    
T  39321093 cactctttaagcataccaaatttaacaattattcttttaaaaagtcaactattacaattttcaatgtattcaatacacaacttttaataaaaaacttact 39320994  T
Q  870 aattaaaatgcgtaaagaatgctccaaagacactccttaa 909  Q
    ||||||| ||| |||||| ||   ||||||||||| ||||    
T  39320993 aattaaagtgcttaaagagtgtctcaaagacactcgttaa 39320954  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 770 - 859
Target Start/End: Original strand, 35731282 - 35731371
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    |||||||||||||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||||| |||||||||||||| ||||    
T  35731282 cactctttaagcataccaaatttaacaactattcttttaaaaagtcaactattacaatttccaatgcacttaatacacaactttttataa 35731371  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 781 - 859
Target Start/End: Original strand, 3692883 - 3692961
Alignment:
Q  781 cataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||    
T  3692883 cataccaaatttagcaattattcttttaaaaaatcaactattacaatttccaatgcactcaatacacaatttttcataa 3692961  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 770 - 854
Target Start/End: Original strand, 28770472 - 28770556
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||||||||||| ||||| |||  |||| ||||||| |||| |||||||||| ||||||||||||| ||||||||||||||||    
T  28770472 cactctttaagcatcccaaaattagtaattattcttttgaaaagtcaactattacaatttccaatgcattcaatacacaactttt 28770556  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 745 - 832
Target Start/End: Original strand, 44537311 - 44537398
Alignment:
Q  745 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttcca 832  Q
    |||| ||||||| |||| |||||| |||||||||||||| ||| |||||  |||| |||||||||||| |||||||||||||||||||    
T  44537311 gtctcgttaacgagtgcccctgatgcactctttaagcatcccatatttagtaattattcttttaaaaagtcaactattataatttcca 44537398  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 745 - 854
Target Start/End: Original strand, 27123244 - 27123353
Alignment:
Q  745 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 844  Q
    |||||||||||| |||| || |   |||||||||||||| |||||||||  |||  |||||||||||| |||||||||| ||||||||||||| | | ||    
T  27123244 gtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaatcattcttttaaaaagtcaactattacaatttccaatgcattaagta 27123343  T
Q  845 cacaactttt 854  Q
    ||||||||||    
T  27123344 cacaactttt 27123353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 746 - 858
Target Start/End: Original strand, 44592837 - 44592949
Alignment:
Q  746 tcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatac 845  Q
    ||||||||||| ||| | |||  |||||||||||  || | |||||||| |||| |||||||||||| | |||||||| ||||| ||||| | |||||||    
T  44592837 tcttgttaacgagtgtttctggaacactctttaaatattcaaaatttaataattattcttttaaaaagttaactattacaattttcaatgtattcaatac 44592936  T
Q  846 acaacttttaata 858  Q
    |||||||||||||    
T  44592937 acaacttttaata 44592949  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 787 - 854
Target Start/End: Original strand, 7653588 - 7653655
Alignment:
Q  787 aaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||| ||| | |||||||||||| ||||||||||||||||||||| || ||| ||||||||||||    
T  7653588 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattacacaactttt 7653655  T

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Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 769 - 859
Target Start/End: Original strand, 27337692 - 27337781
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    |||||||||||| ||  |||||||||||||| |||||| |||||||||||||||| | ||| |||| || | |||||||||||||| ||||    
T  27337692 acactctttaag-atctcaaatttaacaattattctttaaaaaaatcaactattacagtttacaatacattaaatacacaacttttcataa 27337781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 769 - 854
Target Start/End: Complemental strand, 7968671 - 7968586
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||| |||||||||   ||||||| ||||| |||||||||||||||||||||||  | ||  ||||||||| |||||||||||||    
T  7968671 acactttttaagcatcataaatttagcaattattcttttaaaaaatcaactattaccacttttaatgcactctatacacaactttt 7968586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 745 - 854
Target Start/End: Complemental strand, 28663273 - 28663166
Alignment:
Q  745 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 844  Q
    |||||||||||| |||| |||||  ||||||||||||||   || ||||  |||| |||||||||||| |||||||||| ||||| ||||||| ||||||    
T  28663273 gtcttgttaacgagtgc-cctgaggcactctttaagcatcataactttag-aattattcttttaaaaagtcaactattacaattttcaatgcattcaata 28663176  T
Q  845 cacaactttt 854  Q
    ||||| ||||    
T  28663175 cacaattttt 28663166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 745 - 854
Target Start/End: Original strand, 43234760 - 43234869
Alignment:
Q  745 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 844  Q
    |||||||||||| ||||||  |  ||| ||||||||||| | | |||||  |||| |||||||||||||| |||||||| |||||||| | || ||||||    
T  43234760 gtcttgttaacgagtgctctcgggacattctttaagcatcctatatttagtaattattcttttaaaaaataaactattacaatttccattacattcaata 43234859  T
Q  845 cacaactttt 854  Q
    || |||||||    
T  43234860 cataactttt 43234869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 773 - 849
Target Start/End: Complemental strand, 21727514 - 21727438
Alignment:
Q  773 tctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaa 849  Q
    |||||||||||  | ||||||  |||| |||||||||||| |||||||||| |||||||||| || |||||||||||    
T  21727514 tctttaagcatctccaatttagtaattattcttttaaaaagtcaactattacaatttccaatacattcaatacacaa 21727438  T

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Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 769 - 829
Target Start/End: Complemental strand, 32699863 - 32699804
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataattt 829  Q
    ||||||||||| ||| |||||||||| |||| || |||||||||||||||||||| |||||    
T  32699863 acactctttaatcatcccaaatttaaaaattatt-ttttaaaaaatcaactattacaattt 32699804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 796 - 854
Target Start/End: Original strand, 42936028 - 42936085
Alignment:
Q  796 aattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||| ||||||||||||||||||||||| ||||| ||||||| | ||||||||| ||||    
T  42936028 aattattcttttaaaaaatcaactattacaattt-caatgcatttaatacacaattttt 42936085  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 786 - 859
Target Start/End: Original strand, 18801051 - 18801124
Alignment:
Q  786 caaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    |||||||| |||||  |||||| |||| |||||||||| ||||| |||| || | |||||||||||||| ||||    
T  18801051 caaatttagcaattactcttttcaaaagtcaactattacaattttcaatacaatgaatacacaacttttcataa 18801124  T

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Target: chr6 (Bit Score: 64; Significance: 2e-27; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 770 - 857
Target Start/End: Original strand, 1840978 - 1841065
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaat 857  Q
    |||||||||||||||  |||||||| |||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  1840978 cactctttaagcatattaaatttaataattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaacttttaat 1841065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 769 - 859
Target Start/End: Complemental strand, 19293565 - 19293475
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    ||||||||||||||| | ||||||||||||| || ||||||||| | |||||||| ||||||| ||||||||||||  |||||||| ||||    
T  19293565 acactctttaagcatcctaaatttaacaattattattttaaaaagttaactattacaatttccgatgcactcaataaccaacttttcataa 19293475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 770 - 846
Target Start/End: Original strand, 28874394 - 28874470
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaataca 846  Q
    ||||||||||||||   ||| |||  |||| ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  28874394 cactctttaagcatcataaaattagtaattattcttttgaaaaatcaactattataatttccaatgcattcaataca 28874470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 769 - 854
Target Start/End: Complemental strand, 2692542 - 2692457
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||||||||| || | |||||||  |||| || ||||||||| |||||||||| ||||||||||| | | ||||||||||||||    
T  2692542 acactctttaagaatccaaaatttagtaattattattttaaaaagtcaactattacaatttccaatgaagtgaatacacaactttt 2692457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 746 - 854
Target Start/End: Original strand, 9762774 - 9762881
Alignment:
Q  746 tcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatac 845  Q
    ||||||||||| |||| || || ||||||||||| |||   |||||||  | || |||||||||||| |||| |||||||||||| ||| || ||| |||    
T  9762774 tcttgttaacgagtgcccccgaaacactctttaaacatcttaaatttagtattt-ttcttttaaaaagtcaattattataatttctaatacattcagtac 9762872  T
Q  846 acaactttt 854  Q
    |||||||||    
T  9762873 acaactttt 9762881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 770 - 834
Target Start/End: Complemental strand, 11720989 - 11720925
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaat 834  Q
    |||||||||| ||| | ||||||||||||| ||||||||| || |||||||||| ||||| ||||    
T  11720989 cactctttaaacatcctaaatttaacaattattcttttaagaagtcaactattacaattttcaat 11720925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 791 - 854
Target Start/End: Original strand, 32823693 - 32823756
Alignment:
Q  791 ttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||| |||| ||||||| |||| |||| ||||| ||||| ||||||| ||||||||||||||||    
T  32823693 ttaataattattcttttgaaaagtcaattattacaattttcaatgcattcaatacacaactttt 32823756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 819 - 857
Target Start/End: Original strand, 30801785 - 30801823
Alignment:
Q  819 tattataatttccaatgcactcaatacacaacttttaat 857  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  30801785 tattataattttcaatgcattcaatacacaacttttaat 30801823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 804 - 854
Target Start/End: Original strand, 31855083 - 31855133
Alignment:
Q  804 ttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||| |||||||||| ||||||||||||| |||||| |||| ||||    
T  31855083 ttttaaaaagtcaactattacaatttccaatgcattcaatatacaattttt 31855133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 769 - 854
Target Start/End: Complemental strand, 26669391 - 26669306
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||||||||   || |||||| |||| |||||||||||| |||||||||| ||||| || || | | |||||| |||||||    
T  26669391 acactctttaagcacttcatatttaataattattcttttaaaaagtcaactattacaattttcactgtatttaatacataactttt 26669306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 745 - 817
Target Start/End: Original strand, 30509286 - 30509358
Alignment:
Q  745 gtcttgttaacgggtg-ctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaa 817  Q
    |||||||||||| ||| |||| || ||||||||||||||||||||| | | ||||| |||||| ||||||||||    
T  30509286 gtcttgttaacgagtgtctccgga-acactctttaagcataccaaaataagcaattattctttaaaaaaatcaa 30509358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 3e-26; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 733 - 854
Target Start/End: Complemental strand, 45900297 - 45900176
Alignment:
Q  733 attttaaaatgtgtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttcca 832  Q
    ||||||||||| |||||||||||| |||| || ||  |||||||||||||| | ||||||| ||||| |||||||| ||| |||||||| | ||||||||    
T  45900297 attttaaaatgggtcttgttaacgagtgcccccgaggcactctttaagcatcctaaatttagcaattattcttttataaagtcaactatcacaatttcca 45900198  T
Q  833 atgcactcaatacacaactttt 854  Q
    ||||| ||||||||||||||||    
T  45900197 atgcattcaatacacaactttt 45900176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 745 - 854
Target Start/End: Complemental strand, 7444522 - 7444412
Alignment:
Q  745 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaa-tcaactattataatttccaatgcactcaat 843  Q
    |||||||||||| ||||||| |||||||| ||||||||| |||||||||  |||| | ||||||||||| |||||||||| ||||| ||||||| |||||    
T  7444522 gtcttgttaacgagtgctcccgatacactttttaagcatcccaaatttagtaattatacttttaaaaaagtcaactattacaattttcaatgcattcaat 7444423  T
Q  844 acacaactttt 854  Q
    |||||||||||    
T  7444422 acacaactttt 7444412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 770 - 859
Target Start/End: Complemental strand, 37138273 - 37138184
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    ||||||||||| | | |||||||| ||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  37138273 cactctttaaggaaatcaaatttagcaactattcttttaaaaagtcaactattataatttccaatgcactcaatacacaacttttcataa 37138184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 769 - 854
Target Start/End: Original strand, 51834908 - 51834993
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||||||||| | ||||||| ||||| |||||||||||| |||||||||||||||||||||||| | ||||||||||||||    
T  51834908 acactctttaagcatcctaaatttagcaattattcttttaaaaagtcaactattataatttccaatgcattaaatacacaactttt 51834993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 778 - 854
Target Start/End: Original strand, 31429280 - 31429356
Alignment:
Q  778 aagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||| ||| |||||| |||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  31429280 aagcattccatatttaaaaattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaactttt 31429356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 769 - 856
Target Start/End: Original strand, 51736348 - 51736435
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaa 856  Q
    |||||||||||  || ||||||||| ||||| |||||||||||| |||||||||||||||| |||| || | ||||||||||||||||    
T  51736348 acactctttaatgattccaaatttagcaattattcttttaaaaagtcaactattataattttcaatacattgaatacacaacttttaa 51736435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 769 - 854
Target Start/End: Complemental strand, 7852656 - 7852571
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||||||||| | |||||||  |||| |||||||||||||| |||||||| ||||| ||||||| | ||||||||||||||    
T  7852656 acactctttaagcatcctaaatttagtaattattcttttaaaaaattaactattacaattttcaatgcatttaatacacaactttt 7852571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 745 - 854
Target Start/End: Original strand, 8297841 - 8297950
Alignment:
Q  745 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 844  Q
    |||||||||||| |||| || |   |||||||||||||| |||||||||  |||| |||||||||||  |||||| ||| ||||||||||||| ||||||    
T  8297841 gtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaattattcttttaaaatgtcaactgttacaatttccaatgcattcaata 8297940  T
Q  845 cacaactttt 854  Q
    ||||| ||||    
T  8297941 cacaattttt 8297950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 745 - 854
Target Start/End: Original strand, 49400583 - 49400691
Alignment:
Q  745 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 844  Q
    |||||||||||| ||||||| ||  |||| ||||||||| | |||||||  |||| ||||||||||||||||||||||| ||||||||||| | | ||||    
T  49400583 gtcttgttaacgagtgctccagag-cactatttaagcatcctaaatttagtaattattcttttaaaaaatcaactattacaatttccaatgtatttaata 49400681  T
Q  845 cacaactttt 854  Q
    ||| ||||||    
T  49400682 cacgactttt 49400691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 777 - 854
Target Start/End: Complemental strand, 50341971 - 50341894
Alignment:
Q  777 taagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||| |||||||||  |||| |||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||    
T  50341971 taagcattccaaatttagtaattattcttttaaaaagtcaactattacaatttccaacgcattcaatacacaactttt 50341894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 771 - 854
Target Start/End: Complemental strand, 35777809 - 35777726
Alignment:
Q  771 actctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||| ||| |||||||||  |||| |||||||||||| | |||||||| |||||| |||||| ||||||||||||||||    
T  35777809 actctttaaccatcccaaatttagtaattattcttttaaaaagttaactattacaatttctaatgcattcaatacacaactttt 35777726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 770 - 846
Target Start/End: Original strand, 20394633 - 20394709
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaataca 846  Q
    |||||||||||||| |||||||||  |||| |||||||||||| | |||||||| |||||||||| || ||||||||    
T  20394633 cactctttaagcatcccaaatttagtaattattcttttaaaaagtgaactattacaatttccaatacattcaataca 20394709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 775 - 854
Target Start/End: Original strand, 50426989 - 50427068
Alignment:
Q  775 tttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||||||  ||||||||  |||| ||||||| |||| |||||||||| ||||||||||||| |||| |||||||||||    
T  50426989 tttaagcatctcaaatttagtaattattcttttgaaaagtcaactattacaatttccaatgcaatcaacacacaactttt 50427068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 769 - 859
Target Start/End: Complemental strand, 25115375 - 25115285
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    |||||||||||| || | |||||||  |||| || ||||||||| | |||||||| ||||||||||||| | |||||||||||||| ||||    
T  25115375 acactctttaagaatccaaaatttagtaattattattttaaaaagttaactattacaatttccaatgcagtgaatacacaactttttataa 25115285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 769 - 854
Target Start/End: Complemental strand, 37383866 - 37383782
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||||||||| | |||||||  |||| |||||| |||||||||||  |||||| |||||||||| |||||| |||||||||    
T  37383866 acactctttaagcatccaaaatttagtaattattcttt-aaaaaatcaaccgttataacttccaatgcattcaatatacaactttt 37383782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 751 - 837
Target Start/End: Original strand, 48337532 - 48337618
Alignment:
Q  751 ttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgca 837  Q
    |||||| ||| |||||| | ||||||||| ||| |  |||||||||||| ||  ||||||||||||||||||| ||||| |||||||    
T  48337532 ttaacgagtgttcctgagatactctttaaacatccttaatttaacaattatttctttaaaaaatcaactattacaattttcaatgca 48337618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 804 - 854
Target Start/End: Complemental strand, 53014283 - 53014233
Alignment:
Q  804 ttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||||| |||||||| |||||||||| || ||||||||||||||||    
T  53014283 ttttaaaaaattaactattacaatttccaatacattcaatacacaactttt 53014233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 805 - 854
Target Start/End: Original strand, 42222985 - 42223034
Alignment:
Q  805 tttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||| ||||||||||||||| ||||||| ||||||||||| ||||    
T  42222985 tttaaaaaaccaactattataattttcaatgcattcaatacacaattttt 42223034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 770 - 854
Target Start/End: Complemental strand, 27953151 - 27953068
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||||||||  ||||||||  | || || ||||||||| | |||||||| ||||| ||||||| ||||||||||||||||    
T  27953151 cactctttaagcatctcaaatttagta-ttattattttaaaaagttaactattacaattttcaatgcattcaatacacaactttt 27953068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 854
Target Start/End: Complemental strand, 34391801 - 34391734
Alignment:
Q  787 aaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||||  |||| |||||||| ||| |||  ||||| ||||||||||||| ||||||||||||||||    
T  34391801 aaatttagtaattattcttttataaagtcagttattacaatttccaatgcaatcaatacacaactttt 34391734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 804 - 859
Target Start/End: Complemental strand, 43969262 - 43969207
Alignment:
Q  804 ttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    |||| ||||||||||||||| ||||| |||||||||||||| |||| |||| ||||    
T  43969262 tttttaaaaatcaactattacaattttcaatgcactcaatatacaattttttataa 43969207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 771 - 854
Target Start/End: Complemental strand, 47995847 - 47995764
Alignment:
Q  771 actctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||||||| | |||||||  ||||  ||||||||||| | || ||||| ||||| ||||||| |||||||| |||||||    
T  47995847 actctttaagcattctaaatttagtaattactcttttaaaaagttaattattacaattttcaatgcattcaatacataactttt 47995764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 770 - 854
Target Start/End: Complemental strand, 49084512 - 49084427
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatg-cactcaatacacaactttt 854  Q
    ||||||||||  || | |||||||  |||| |||||||||||| |||||||||| ||||| |||||  | ||||||||||||||||    
T  49084512 cactctttaattatcctaaatttagtaattattcttttaaaaagtcaactattacaattttcaatgaaattcaatacacaactttt 49084427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 2e-24; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 745 - 859
Target Start/End: Original strand, 15720037 - 15720151
Alignment:
Q  745 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 844  Q
    |||||||||||| ||| | | ||  ||||||| |||||||||||||||| ||||| |||||||||||| |||||||||| ||||||||||| ||| ||||    
T  15720037 gtcttgttaacgagtgtttccgaagcactcttcaagcataccaaatttatcaattattcttttaaaaagtcaactattacaatttccaatgaacttaata 15720136  T
Q  845 cacaacttttaataa 859  Q
    |||||||||| ||||    
T  15720137 cacaacttttcataa 15720151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 769 - 854
Target Start/End: Original strand, 7719198 - 7719283
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| ||||||||||  | ||||||||||||||||    
T  7719198 acactctttaagcataccatatttaaaaattattcttttaaaaaatcaactattacaatttccaatatattcaatacacaactttt 7719283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 770 - 854
Target Start/End: Complemental strand, 30501251 - 30501167
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||||||||||| |||||||||  |||| |||||||||||| |||| ||||| |||||||||| || ||||||||||||||||    
T  30501251 cactctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaatacacaactttt 30501167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 770 - 854
Target Start/End: Complemental strand, 30541594 - 30541510
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||||||||||| |||||||||  |||| |||||||||||| |||| ||||| |||||||||| || ||||||||||||||||    
T  30541594 cactctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaatacacaactttt 30541510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 773 - 854
Target Start/End: Complemental strand, 9276688 - 9276607
Alignment:
Q  773 tctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||| |||||| |||||||||  |||| || |||||||||||||||||||||||||| ||||||| |||||||| |||||||    
T  9276688 tcttcaagcatcccaaatttagtaattatttttttaaaaaatcaactattataattttcaatgcattcaatacataactttt 9276607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 770 - 854
Target Start/End: Complemental strand, 16667403 - 16667319
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||||||||  ||||||||| |||| |||||||||||| |||| ||||| |||||||||| || ||||||||||| ||||    
T  16667403 cactctttaagcatcacaaatttaataattattcttttaaaaagtcaattattacaatttccaatacattcaatacacaattttt 16667319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 770 - 854
Target Start/End: Original strand, 30104799 - 30104883
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||||||||||| |||||||||  || | || ||||||||| ||||| |||| ||||||||||||| ||||||||||||||||    
T  30104799 cactctttaagcatcccaaatttagtaactatttttttaaaaagtcaacaattacaatttccaatgcattcaatacacaactttt 30104883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 771 - 854
Target Start/End: Complemental strand, 2918707 - 2918624
Alignment:
Q  771 actctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||||||||||  ||||||||| |||| || ||| ||||  |||||||||||||||||||||||| | ||||||||||||||    
T  2918707 actctttaagcatttcaaatttaataattattttttaaaaatgtcaactattataatttccaatgcatttaatacacaactttt 2918624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 748 - 909
Target Start/End: Original strand, 8221096 - 8221256
Alignment:
Q  748 ttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacac 847  Q
    ||||||||  ||||||| |  ||||||||||| ||| | ||||||| ||||| |||| ||||||| |||||||||| || || ||||||| |||||||||    
T  8221096 ttgttaacaagtgctcccggaacactctttaa-cattctaaatttagcaattattctcttaaaaagtcaactattacaactttcaatgcattcaatacac 8221194  T
Q  848 aacttttaataannnnnnnactaattaaaatgcgtaaagaatgctccaaagacactccttaa 909  Q
    || |||| || |       |||| ||||||||| |||||||||||||  |||||||| ||||    
T  8221195 aattttttattaaaaacttactatttaaaatgcttaaagaatgctccggagacactcattaa 8221256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 771 - 854
Target Start/End: Complemental strand, 18229712 - 18229629
Alignment:
Q  771 actctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||||||| |||||||||  |||| |||||||||||| | |||||||| |||||||||| || |||||| |||| ||||    
T  18229712 actctttaagcatcccaaatttagtaattattcttttaaaaagttaactattacaatttccaatacattcaataaacaattttt 18229629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 769 - 817
Target Start/End: Original strand, 141866 - 141914
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaa 817  Q
    ||||||||||||||||||||| | ||||||| |||||||||||| ||||    
T  141866 acactctttaagcataccaaaataaacaattattcttttaaaaagtcaa 141914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 770 - 849
Target Start/End: Original strand, 13480013 - 13480093
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaa-tcaactattataatttccaatgcactcaatacacaa 849  Q
    ||||||||||||||  ||||||||  |||| || ||| |||||| | |||||||||||||| ||||||| |||||||||||    
T  13480013 cactctttaagcatttcaaatttagtaattattttttaaaaaaaattaactattataattttcaatgcattcaatacacaa 13480093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 854
Target Start/End: Original strand, 3140826 - 3140893
Alignment:
Q  787 aaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||||| |||| |||||||||||| |||||||||| ||||| |||| || | |||| |||||||||    
T  3140826 aaatttaataattattcttttaaaaagtcaactattacaattttcaattcatttaatatacaactttt 3140893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 769 - 854
Target Start/End: Complemental strand, 34899248 - 34899163
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||||||||| |||||| ||  |||| ||||||||||||  ||| ||||| |||||| |||||| | |||| | |||||||    
T  34899248 acactctttaagcatcccaaatatagtaattattcttttaaaaagacaattattacaatttctaatgcatttaatatataactttt 34899163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 769 - 854
Target Start/End: Complemental strand, 39558879 - 39558794
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||||||||| || ||| |||||  |||| ||| |||||||| |||||| ||| ||||||||||||| |  |||||| ||||||    
T  39558879 acactctttaagtattccatatttagtaattattcatttaaaaattcaactgttacaatttccaatgcatttgatacacgactttt 39558794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 7e-21; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 770 - 854
Target Start/End: Complemental strand, 1334995 - 1334911
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||||||||||| |||||||||| |||| |||||| |||||||||||||||| ||||||||||||| |||||| |||| ||||    
T  1334995 cactctttaagcatcccaaatttaataattattctttaaaaaaatcaactattacaatttccaatgcattcaatatacaattttt 1334911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 769 - 894
Target Start/End: Original strand, 41933125 - 41933250
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataannnnnnnac 868  Q
    ||||| ||||| |||| |||||||| ||||| |||||||||||| |||||||||| ||||| ||||||||||| || ||||||||| ||||       ||    
T  41933125 acactgtttaaacatatcaaatttagcaattattcttttaaaaagtcaactattacaattttcaatgcactcagtaaacaactttttataaaaaatttac 41933224  T
Q  869 taattaaaatgcgtaaagaatgctcc 894  Q
    |||||||| ||| |||||| ||||||    
T  41933225 taattaaagtgcttaaagagtgctcc 41933250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 745 - 854
Target Start/End: Original strand, 4762319 - 4762428
Alignment:
Q  745 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 844  Q
    |||||||||||| ||||||| |   |||| ||||||||| |||||||||  |||| || ||||| ||| |||||||||||||||| ||||||| ||||||    
T  4762319 gtcttgttaacgagtgctcccggatcactgtttaagcatcccaaatttagtaattattattttataaagtcaactattataattttcaatgcattcaata 4762418  T
Q  845 cacaactttt 854  Q
    ||||| ||||    
T  4762419 cacaattttt 4762428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 775 - 854
Target Start/End: Complemental strand, 19890295 - 19890216
Alignment:
Q  775 tttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||| | |||||||  |||| |||||||||||| |||||||||| ||||||||||||| | ||||||||||||||    
T  19890295 tttaagcatcctaaatttagtaattattcttttaaaaagtcaactattacaatttccaatgcatttaatacacaactttt 19890216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 771 - 844
Target Start/End: Original strand, 40789703 - 40789777
Alignment:
Q  771 actctttaagcataccaaatttaacaattgttcttttaaaa-aatcaactattataatttccaatgcactcaata 844  Q
    ||||||| ||||||||||||||||||||| |||||||||||  ||||| ||||||||||| |||| |||||||||    
T  40789703 actctttgagcataccaaatttaacaattattcttttaaaattatcaattattataattttcaatacactcaata 40789777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 769 - 854
Target Start/End: Original strand, 15505538 - 15505623
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||||||||| ||  ||||||||| |||| |||||| ||||| | |||||||||||||| |||| || ||||||||||||||||    
T  15505538 acactctttaagtatttcaaatttaataattattctttcaaaaagtaaactattataattttcaatacattcaatacacaactttt 15505623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 745 - 854
Target Start/End: Complemental strand, 38533480 - 38533373
Alignment:
Q  745 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 844  Q
    |||||||||||| |||| |||  ||||||||||||||||  ||||||||| |||| || ||||||| | ||||||||| ||||||| |||||| ||||||    
T  38533480 gtcttgttaacgagtgc-cctcgtacactctttaagcatctcaaatttaataatt-ttattttaaatagtcaactattgtaatttctaatgcattcaata 38533383  T
Q  845 cacaactttt 854  Q
    ||||| ||||    
T  38533382 cacaattttt 38533373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 770 - 854
Target Start/End: Complemental strand, 9449064 - 9448981
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||||||||||   ||||||||  |||| |||||||||||| |||||||||||||||| |||| || ||||||||||||||||    
T  9449064 cactctttaagcaactcaaatttagtaattattcttttaaaaa-tcaactattataattttcaatacattcaatacacaactttt 9448981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 773 - 855
Target Start/End: Complemental strand, 31452454 - 31452372
Alignment:
Q  773 tctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttta 855  Q
    ||||||| ||| |||| ||||  |||| |||||||||||| ||||| |||| ||||| ||||||| |||||||||||||||||    
T  31452454 tctttaaacatcccaagtttagtaattattcttttaaaaagtcaacaattacaattttcaatgcattcaatacacaactttta 31452372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 770 - 854
Target Start/End: Original strand, 19514866 - 19514950
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||| |||| || | ||||||||||||| ||||||| |||| |||||||||||||||  ||||||| | |||| |||||||||    
T  19514866 cactctgtaaggatcctaaatttaacaattattctttttaaaagtcaactattataattatcaatgcaatgaatatacaactttt 19514950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 773 - 859
Target Start/End: Original strand, 14295626 - 14295712
Alignment:
Q  773 tctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    |||||||| || |||||||||  |||| |||||||||||  | |||||||| ||||| ||||||| | |||||||||||||| ||||    
T  14295626 tctttaagaatcccaaatttagtaattattcttttaaaaggttaactattacaattttcaatgcattgaatacacaactttttataa 14295712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 793 - 854
Target Start/End: Complemental strand, 43617575 - 43617514
Alignment:
Q  793 aacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||| |||||| |||||||||| ||||||||||||||| ||| | ||||||| ||||||    
T  43617575 aacaattattctttcaaaaaatcaattattataatttccaaagcattaaatacacgactttt 43617514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 780 - 859
Target Start/End: Complemental strand, 9173808 - 9173728
Alignment:
Q  780 gcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactc-aatacacaacttttaataa 859  Q
    |||||| ||||||| ||||| || |||||||||||||||||||| ||||| |||| || || ||||||||| |||| ||||    
T  9173808 gcatactaaatttagcaattatttttttaaaaaatcaactattacaattttcaatacaatcaaatacacaatttttcataa 9173728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 771 - 854
Target Start/End: Complemental strand, 31017418 - 31017335
Alignment:
Q  771 actctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||| ||| || |||||||||  |||| |||||| ||||| |||| |||| |||||| ||||||| | ||||||||||||||    
T  31017418 actcttcaagtatcccaaatttagtaattattctttaaaaaagtcaaatattttaattttcaatgcatttaatacacaactttt 31017335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 773 - 909
Target Start/End: Original strand, 37993076 - 37993212
Alignment:
Q  773 tctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataannnnnnnactaat 872  Q
    ||||||| ||| | |||||||| || | |||||| |||||||||||||||| ||||| ||||||| | |||||| || |||| || |       |||| |    
T  37993076 tctttaaacattctaaatttaataactattctttcaaaaaatcaactattacaattttcaatgcatttaatacataattttttattaaaaatttactatt 37993175  T
Q  873 taaaatgcgtaaagaatgctccaaagacactccttaa 909  Q
    |||||||  ||||||||||| || |||||||| ||||    
T  37993176 taaaatgtttaaagaatgcttcagagacactctttaa 37993212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 745 - 859
Target Start/End: Complemental strand, 11945009 - 11944895
Alignment:
Q  745 gtcttgttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaata 844  Q
    |||||||||||| ||| ||| || |||||||||||| || | || ||||  |||| || ||  ||||  |||||||||| ||||| ||||||| | ||||    
T  11945009 gtcttgttaacgagtgttccagagacactctttaaggatcctaattttagtaattatttttaaaaaatgtcaactattacaattttcaatgcattgaata 11944910  T
Q  845 cacaacttttaataa 859  Q
    |||||||||| ||||    
T  11944909 cacaacttttcataa 11944895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 770 - 859
Target Start/End: Original strand, 13538391 - 13538480
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    |||||||||||||||| |||||  | |||| |||||| ||||| |||| || |  ||||||||||||| | |||||| ||||||| ||||    
T  13538391 cactctttaagcatactaaattagaaaattattctttaaaaaattcaaataattcaatttccaatgcattgaatacataacttttcataa 13538480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 770 - 859
Target Start/End: Original strand, 20064906 - 20064995
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    ||||||||||| || | |||| ||  |||| |||||||||||| |||||||||| ||||| ||||| | | ||||||||| |||| ||||    
T  20064906 cactctttaaggatcctaaatatagtaattattcttttaaaaagtcaactattacaattttcaatgtattaaatacacaatttttcataa 20064995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 769 - 854
Target Start/End: Complemental strand, 38533980 - 38533896
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||| ||||||||||  ||||||||  |||| || ||||||| | ||||||||| ||||||| |||||| ||||||||||| ||||    
T  38533980 acaccctttaagcatctcaaatttagtaattatt-ttttaaatagtcaactattgtaatttctaatgcattcaatacacaattttt 38533896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 4e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 770 - 859
Target Start/End: Complemental strand, 39551966 - 39551878
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||||||||| || ||||| |||| ||||||||| ||||||||| ||||    
T  39551966 cactatttaagcataccaaatttagcaattattcttttaaaaaatcaacta-tacaattttcaatacactcaataaacaacttttcataa 39551878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 768 - 886
Target Start/End: Original strand, 47638888 - 47639006
Alignment:
Q  768 tacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataannnnnnna 867  Q
    |||||||||||||||||| ||||||||| ||| | |||||||||| | |||||||| |||||  |||||||||||||||||| |||| ||||       |    
T  47638888 tacactctttaagcatactaaatttaactattatgcttttaaaaagttaactattacaatttttaatgcactcaatacacaatttttcataaagaactta 47638987  T
Q  868 ctaattaaaatgcgtaaag 886  Q
    ||||||||||||| |||||    
T  47638988 ctaattaaaatgcttaaag 47639006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 769 - 837
Target Start/End: Complemental strand, 48180283 - 48180215
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgca 837  Q
    ||||||||||||||| || |||||||||||| |||||||||||| |||||||||| |||||||||||||    
T  48180283 acactctttaagcatccccaatttaacaattattcttttaaaaagtcaactattacaatttccaatgca 48180215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 785 - 854
Target Start/End: Complemental strand, 45988321 - 45988253
Alignment:
Q  785 ccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||||| |||||| ||||||||||||||||||||||| |||||| |||||| | || |||||||||||    
T  45988321 ccaaatttgacaattattcttttaaaaaatcaactattacaatttctaatgca-ttaacacacaactttt 45988253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 745 - 854
Target Start/End: Complemental strand, 42846143 - 42846032
Alignment:
Q  745 gtcttgttaacgggtgc-tcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaa-tgcactcaa 842  Q
    ||||||||| || |||| ||| ||| |||||||||||||| | |||||||  |||| |||||| ||||| |||||||||  ||||| ||| |||| ||||    
T  42846143 gtcttgttagcgagtgcctccggatgcactctttaagcatcctaaatttagtaattattctttgaaaaagtcaactatttcaattttcaattgcattcaa 42846044  T
Q  843 tacacaactttt 854  Q
    ||||||||||||    
T  42846043 tacacaactttt 42846032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 769 - 859
Target Start/End: Complemental strand, 52638270 - 52638180
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    |||||||||||| || | |||||||  |||| || |||||||||  ||||||||| ||||||||||||| | ||||||||| |||| ||||    
T  52638270 acactctttaagaatccaaaatttagtaattattattttaaaaagccaactattacaatttccaatgcagtgaatacacaattttttataa 52638180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 770 - 835
Target Start/End: Complemental strand, 49362465 - 49362400
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatg 835  Q
    |||| ||||| ||| |||||||||| |||| |||||||||||| | |||||||| |||||||||||    
T  49362465 cactttttaaacatcccaaatttaataattattcttttaaaaagttaactattacaatttccaatg 49362400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 735 - 791
Target Start/End: Complemental strand, 46547928 - 46547872
Alignment:
Q  735 tttaaaatgtgtcttgttaacgggtgctcctgatacactctttaagcataccaaatt 791  Q
    ||||| ||| |||||||||||||||||  |||| |||||||||||| ||||||||||    
T  46547928 tttaatatgagtcttgttaacgggtgcctctgagacactctttaagtataccaaatt 46547872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 804 - 859
Target Start/End: Original strand, 16663006 - 16663061
Alignment:
Q  804 ttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    ||||||||| |||||||||| |||| |||||||| | |||||||||||||| ||||    
T  16663006 ttttaaaaagtcaactattacaattaccaatgcagtgaatacacaactttttataa 16663061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 775 - 854
Target Start/End: Original strand, 51351277 - 51351356
Alignment:
Q  775 tttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||| | |||||||| |||| |||||||||||| |  | |||||||||||||||| || | ||||||||| ||||    
T  51351277 tttaagcattctaaatttaataattattcttttaaaaagtttagtattataatttccaatacatttaatacacaattttt 51351356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 770 - 854
Target Start/End: Complemental strand, 26900136 - 26900050
Alignment:
Q  770 cactctttaagcataccaaat-ttaacaattgttcttttaaaaaa-tcaactattataatttccaatgcactcaatacacaactttt 854  Q
    |||||||||||||| |||||| | || |||| ||||||||||||| |||||||||| ||||| ||||||| | | |||| |||||||    
T  26900136 cactctttaagcatcccaaatgtgaaaaattattcttttaaaaaagtcaactattacaattttcaatgcatttattacataactttt 26900050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 796 - 837
Target Start/End: Complemental strand, 22730571 - 22730530
Alignment:
Q  796 aattgttcttttaaaaaatcaactattataatttccaatgca 837  Q
    |||| |||||||||||| |||||||||||||||| |||||||    
T  22730571 aattattcttttaaaaagtcaactattataattttcaatgca 22730530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 769 - 854
Target Start/End: Original strand, 52249320 - 52249405
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||| |||||| |||| |||||||| |||| |||||||||||| | |||||||| ||| || |||  | |||||| |||||||||    
T  52249320 acactttttaagtatacaaaatttaataattattcttttaaaaagttaactattacaatctctaatatattcaatatacaactttt 52249405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 770 - 846
Target Start/End: Original strand, 1060 - 1136
Alignment:
Q  770 cactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaataca 846  Q
    ||||||||||||||   ||| |||  |||| ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  1060 cactctttaagcatcataaaattagtaattattcttttgaaaaatcaactattataatttccaatgcattcaataca 1136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1444 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 859
Target Start/End: Complemental strand, 1026 - 954
Alignment:
Q  787 aaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    ||||||| |||||||||||||||||| |||||||||| ||||| ||||| | | |||||||| ||||| ||||    
T  1026 aaatttagcaattgttcttttaaaaagtcaactattacaattttcaatgtattgaatacacatcttttcataa 954  T

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Target: scaffold1444; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 801 - 859
Target Start/End: Complemental strand, 1784 - 1726
Alignment:
Q  801 ttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    ||||||||||||  ||||||||| ||||||||||||| | ||| |||||||||| ||||    
T  1784 ttcttttaaaaagccaactattacaatttccaatgcattgaatgcacaacttttcataa 1726  T

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Target: scaffold0204 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 751 - 837
Target Start/End: Original strand, 25054 - 25140
Alignment:
Q  751 ttaacgggtgctcctgatacactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgca 837  Q
    |||||| ||| |||||| | ||||||||| ||| |  |||||||||||| ||  ||||||||||||||||||| ||||| |||||||    
T  25054 ttaacgagtgttcctgagatactctttaaacatccttaatttaacaattatttctttaaaaaatcaactattacaattttcaatgca 25140  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 771 - 846
Target Start/End: Complemental strand, 62635 - 62560
Alignment:
Q  771 actctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaataca 846  Q
    |||||||||||||  || |||||  |||| |||||||||||| ||||||||||  |||| ||||||| ||||||||    
T  62635 actctttaagcatctcatatttagtaattattcttttaaaaagtcaactattacgattttcaatgcattcaataca 62560  T

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Target: scaffold0268 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 801 - 859
Target Start/End: Complemental strand, 20328 - 20270
Alignment:
Q  801 ttcttttaaaaaatcaactattataatttccaatgcactcaatacacaacttttaataa 859  Q
    |||||||||||| | |||||||| |||||| |||||| | |||||||||||||| ||||    
T  20328 ttcttttaaaaagttaactattacaatttcaaatgcattaaatacacaacttttcataa 20270  T

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Target: scaffold0119 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 769 - 854
Target Start/End: Original strand, 1402 - 1487
Alignment:
Q  769 acactctttaagcataccaaatttaacaattgttcttttaaaaaatcaactattataatttccaatgcactcaatacacaactttt 854  Q
    ||||||||||||||   || |||||| |||| |||||||||||| |||||||||| ||||| || || | | |||||| |||||||    
T  1402 acactctttaagcacttcatatttaataattattcttttaaaaagtcaactattacaattttcactgtatttaatacataactttt 1487  T

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