View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4443-Insertion-4 (Length: 964)
Name: NF4443-Insertion-4
Description: NF4443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4443-Insertion-4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-178; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 73 - 443
Target Start/End: Original strand, 2228045 - 2228410
Alignment:
| Q |
73 |
gagtgctgctaaaatttgacattacttgtaagggtgaaaacaattgttttgattttttgatgttgtctttgtgacgtttcttcaaagaaaaactatattt |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2228045 |
gagtgctgctaaaatttgacattacttgtaagggtgaaaacaattgttttgattttttgatgttgtctttgtgacgtttcttcaaagaaaaactatattt |
2228144 |
T |
|
| Q |
173 |
gacgactgattagttaggaaaaaacttattttgatatatatgtcgaaatagaataggaagaagtaaaagacaaacaattcaattagtgtgatcgnnnnnn |
272 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2228145 |
gacgactgattag----gaaaaaacttattttgatatatatgtcaaaatagaataggaagaagtaaaagacaaacaattcaatt-gtgtgatcgaaaaaa |
2228239 |
T |
|
| Q |
273 |
nggagaatatggcttgaaatctcataagaacaaatgactgaaaaattgaaaacatgatcataagtaataggcatcctttatggagttagacaatcaatct |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2228240 |
aggagaatatggcttgaaatctcataagaacaaatgactgaaaaattgaaaacatgatcataagtaataggcatcctttatggagttagacaatcaatct |
2228339 |
T |
|
| Q |
373 |
gttgtttgaacaatgtcatttcgttggggtgggatgcagatgcgaggttgttaaaatgtaattcaaatctc |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2228340 |
gttgtttgaacaatgtcatttcgttggggtgggatgcatatgcgaggttgttaaaatgtaattcaaatctc |
2228410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 546 - 880
Target Start/End: Original strand, 2228530 - 2228864
Alignment:
| Q |
546 |
cataagaggaacatttgtgtataaattatgattcctcattgaataatagctaatgcattcacttgtttattctttcataatctcttaatcattcttccta |
645 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2228530 |
cataagaggaacatttgtgtataaattatgattcctcattgaataatagctaatgcattcacttgtttattctttcataatctcttaatcattcttccta |
2228629 |
T |
|
| Q |
646 |
aactgtttcttaatcttcaagcacataaaatcataaaccctagaatcaattgtttcccctaacaattggtatccagagcctaacattactttgatccaac |
745 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2228630 |
aactgtttcttaatcttcaagcacataaaatcataaaccctagaatcaattgtttcccctaacaattggtattcagagcctaacattactttgatccaac |
2228729 |
T |
|
| Q |
746 |
aagaagatcaatcatgaattccaatgggaatattgttgcgcacttaccagtaagaatttggacagactggtgaaacagatgaagttaatctttgggtttc |
845 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2228730 |
aagaagatcaatcatgaattccaataaaaatattgttgcgcacttaccagtaagaatttggacagactggtgaaacagatgaagttaatctttaggtttc |
2228829 |
T |
|
| Q |
846 |
aagatgttattgagattgttaacaatggagttaac |
880 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
2228830 |
aagatgttattgagattgttaacaatggagttaac |
2228864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 2227926 - 2228041
Alignment:
| Q |
8 |
atatttacttttaagagttattactatgatatgcaatattttgaagactatatattacactcattgagtgctgctaaaatttgacattacttgtaagggt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
2227926 |
atatttacttttaagagttattactatgatatgcaatattttgaagactata--ttacactcatcgagtgctgctaaaatttgacattacttttaaaggt |
2228023 |
T |
|
| Q |
108 |
gaaaacaattgttttgat |
125 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2228024 |
gaaaacaattgttttgat |
2228041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 868 - 926
Target Start/End: Original strand, 2228881 - 2228939
Alignment:
| Q |
868 |
caatggagttaaccttcaagaccagaatagaaccttcaagactagaatagaatgtggtt |
926 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2228881 |
caatggagttaactttcaagaccagaatagaaccttcaagactagaatagaatgtggtt |
2228939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 1e-34; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 696 - 872
Target Start/End: Original strand, 33699150 - 33699336
Alignment:
| Q |
696 |
tgtttcccctaacaattggtatccagagcctaacattactttgatccaacaagaagatcaatcatgaattccaatgggaatattgttgcgcacttacca- |
794 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
33699150 |
tgtttcccctaacaattggtatccagagccatacattactttgatccaagaagaagatcaatcatgaatttcaatgcgaatactgttgcgcacttaccaa |
33699249 |
T |
|
| Q |
795 |
---------gtaagaatttggacagactggtgaaacagatgaagttaatctttgggtttcaagatgttattgagattgttaacaatg |
872 |
Q |
| |
|
| ||||||| |||||| ||||||||||||||| | |||||||| |||||| ||||| ||||| |||| ||||||| |
|
|
| T |
33699250 |
tttttgatggaaagaattgggacaggtgggtgaaacagatgaaagtcatctttggatttcaatatgttcttgagcttgtcaacaatg |
33699336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 696 - 794
Target Start/End: Original strand, 33682093 - 33682191
Alignment:
| Q |
696 |
tgtttcccctaacaattggtatccagagcctaacattactttgatccaacaagaagatcaatcatgaattccaatgggaatattgttgcgcacttacca |
794 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| || |||||||||| ||||| |||||||||||||||| || ||||||||| ||||||||||||| |
|
|
| T |
33682093 |
tgtttcccctaacaattggtatccagagccatacactagtttgatccaagaagaatatcaatcatgaattccgatcggaatattgctgcgcacttacca |
33682191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 565 - 609
Target Start/End: Complemental strand, 34442033 - 34441989
Alignment:
| Q |
565 |
tataaattatgattcctcattgaataatagctaatgcattcactt |
609 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34442033 |
tatatattctgattcctcattgaataatagctaatgcatttactt |
34441989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 4e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 547 - 641
Target Start/End: Complemental strand, 25518694 - 25518600
Alignment:
| Q |
547 |
ataagaggaacatttgtgtataaattatgattcctcattgaataatagctaatgcattcacttgtttattctttcataatctcttaatcattctt |
641 |
Q |
| |
|
|||||||||||| ||||||||| || ||||||||||||||||||||| ||||||||||||||||| || |||||| |||| ||| ||||||||| |
|
|
| T |
25518694 |
ataagaggaacacttgtgtatatcttttgattcctcattgaataatagttaatgcattcacttgttcatactttcaaaatcactttatcattctt |
25518600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 709
Target Start/End: Complemental strand, 25518591 - 25518558
Alignment:
| Q |
676 |
tcataaaccctagaatcaattgtttcccctaaca |
709 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
25518591 |
tcataaaccctagagtcaattgtttcccctaaca |
25518558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 494 - 531
Target Start/End: Complemental strand, 25518761 - 25518724
Alignment:
| Q |
494 |
taactaactatttcctagtttttagctaagtctgttac |
531 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
25518761 |
taactaactatttccttgtttttagctaagtttgttac |
25518724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 814 - 877
Target Start/End: Complemental strand, 12197866 - 12197803
Alignment:
| Q |
814 |
ggtgaaacagatgaagttaatctttgggtttcaagatgttattgagattgttaacaatggagtt |
877 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||| |||||||||| ||||||| |||| |
|
|
| T |
12197866 |
ggtgaaacagatgaaggtgatctttgggtttcaagatgttcttgagattgtcaacaatgaagtt |
12197803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 551 - 607
Target Start/End: Original strand, 39736437 - 39736493
Alignment:
| Q |
551 |
gaggaacatttgtgtataaattatgattcctcattgaataatagctaatgcattcac |
607 |
Q |
| |
|
|||||||| |||||| || ||| |||||||||| ||||||||||||| ||||||||| |
|
|
| T |
39736437 |
gaggaacacttgtgtgtatattctgattcctcaatgaataatagctagtgcattcac |
39736493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University