View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4443-Insertion-5 (Length: 699)
Name: NF4443-Insertion-5
Description: NF4443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4443-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 7 - 444
Target Start/End: Original strand, 40892743 - 40893180
Alignment:
| Q |
7 |
aagatcaacaacctaattatatacttaacgatagatagcaaatagactttttgttctagtgagctaatcaaaatcaacagcacagaccaaacttgtatat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40892743 |
aagatcaacaacctaattatatacttaacgatagatagcaaatagactttttgttctagtgagctaatcaaaatcaacagcacagaccaaacttgtatat |
40892842 |
T |
|
| Q |
107 |
gtaaatattcttactatggtgattgtgcaatgctttccatccactctcaacctaacatgtgttattcacacacaaacaacaataatatgagctaaaaaat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40892843 |
gtaaatattcttactatggtgattgtgcaatgctttccatccactctcaacctaacatgtgttattcacacacaaacaacaataatatgagctaaaaaat |
40892942 |
T |
|
| Q |
207 |
taagcactgacacaattgagggaagggaatttgtgtttaaattgatgatcatagtcgcttgaattggccggaaccttcttctaagattgtatttatgttg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40892943 |
taagcactgacacaattgagggaagggaatttgtgtttaaattgatgatcatagtcgcttgaattggccggaaccttcttctaagattgtatttatgttg |
40893042 |
T |
|
| Q |
307 |
ataaccatgctagtatatggtttctgttgactcatcctacaatgaaatgaaaatggtacaaacacctaaatacaagagtaaggtggtggtagtgtacctc |
406 |
Q |
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| T |
40893043 |
ataaccatgctagtatatggtttctgttgactcatcctacaatgaaatgaaaatggtacaaacacctaaatacaagagtaaggtggtggtagtgtacctc |
40893142 |
T |
|
| Q |
407 |
ttcaaaaaaggaacgtaatcttgatcctattgtttagt |
444 |
Q |
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| T |
40893143 |
ttcaaaaaaggaacgtaatcttgatcctattgtttagt |
40893180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 491 - 699
Target Start/End: Original strand, 40893227 - 40893435
Alignment:
| Q |
491 |
catatgcactctggcataataacacctttgcttgccggtaatttcttagaaatatgcaccatgatatcgtaaacatgttgtaaagcaatcatcattaaat |
590 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40893227 |
catatgcactctggcataataacacctttgcttgccggtaatttcttagaaatatgcaccatgatatcgtaaacatgttgtaaagcaataatcattaaat |
40893326 |
T |
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| Q |
591 |
aaacaaaacaagactttcattagagccatatagtcaaaacaagtacaattgatggcagggtttgggacatttcagttcacaaccaagtcctagaattcat |
690 |
Q |
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| T |
40893327 |
aaacaaaacaagactttcattagagccatatagtcaaaacaagtacaattgatggcagggtttgggacatttcagttcacaaccaagtcctagaattcat |
40893426 |
T |
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| Q |
691 |
gtgctgcag |
699 |
Q |
| |
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||||||||| |
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| T |
40893427 |
gtgctgcag |
40893435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 73 - 287
Target Start/End: Original strand, 44144296 - 44144510
Alignment:
| Q |
73 |
atcaaaatcaacagcacagaccaaacttgtatatgtaaatattcttactatggtgattgtgcaatgctttccatccactctcaacctaacatgtgttatt |
172 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44144296 |
atcaaaatcaacagcacagaccaaacttgtatatgtaaatattcttactatggtgattgtgcaatgctttccatacactctcaacctaacatgtgttatt |
44144395 |
T |
|
| Q |
173 |
cacacacaaacaacaataatatgagctaaaaaattaagcactgacacaattgagggaagggaatttgtgtttaaattgatgatcatagtcgcttgaattg |
272 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
44144396 |
cacacacaaacaacaataatatgagctcaaaaatcaagcactgacacaattgagggaagggaatttgtgattaaattgatgatcatagttacttgaattg |
44144495 |
T |
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| Q |
273 |
gccggaaccttcttc |
287 |
Q |
| |
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||||||||||||||| |
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| T |
44144496 |
gccggaaccttcttc |
44144510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 284 - 370
Target Start/End: Original strand, 44144533 - 44144622
Alignment:
| Q |
284 |
cttctaagattgtatttatgttgataaccatgct---agtatatggtttctgttgactcatcctacaatgaaatgaaaatggtacaaaca |
370 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44144533 |
cttctaagattgtatttatgttgataaccatgctgctagtatatggtttctgttgactcatcctacaatgaaatgaaaatggtagaaaca |
44144622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 44144167 - 44144236
Alignment:
| Q |
7 |
aagatcaacaacctaattatatacttaacgatagatagcaaatagactttttgttctagtgagctaatca |
76 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44144167 |
aagatcaacaacctaattatatacttaacgatagatagcaaatagactttttgttctagtgagctaatca |
44144236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 364 - 414
Target Start/End: Original strand, 44144656 - 44144706
Alignment:
| Q |
364 |
acaaacacctaaatacaagagtaaggtggtggtagtgtacctcttcaaaaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44144656 |
acaaacacctaaatacaagagtaaggtggtggtagtgtacaccttcaaaaa |
44144706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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