View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4443-Insertion-7 (Length: 456)
Name: NF4443-Insertion-7
Description: NF4443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4443-Insertion-7 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 455
Target Start/End: Complemental strand, 6226565 - 6226120
Alignment:
| Q |
8 |
tgtggtgcagatgtgcataaagtgtctctgattgtaaactatgatctcccaactgtgcctgaaaactatcttcaccgtataggccggagtgggaaatttg |
107 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6226565 |
tgtggtgcagatgtgcataaagcgtctctgatcgtaaactatgatctcccaactgtgcctgaaaactatcttcaccgtataggccggagtgagaaatttg |
6226466 |
T |
|
| Q |
108 |
ccataaacttcatgacagaggatgaagctggaatgctgatagatattcagaaattctacaatatggttatagaggagctgccatgcaattttgaagattt |
207 |
Q |
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| T |
6226465 |
ctataaacttcatgacagaggatgagactagtatgatcatagatattcagaaattctacaatatggttatagaggagctgccatgcaattttgaagattt |
6226366 |
T |
|
| Q |
208 |
gctctgatgagttaaattttgctcttctgtaaagttattggggattttacttttggacaagtactatctttgataatttgtaaaaacatatattctttcc |
307 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | |
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| T |
6226365 |
gctctgatgagttaaattttgttcttctgtaaagttattggggattttacttttggacaagtaatatctttgatattttgtaaaaacatatattctt--c |
6226268 |
T |
|
| Q |
308 |
atttatatattactcattacaaatctaacatatctgatttgatgttacttgaattttatcaaatttgtttgattaggaagttatttaacactgttatgtt |
407 |
Q |
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| T |
6226267 |
atttatatattactcattacaaatctaacatatctgatttgatgttacttgaattttatcaaatttgtttgattaggaagttatttaacactgttatgtt |
6226168 |
T |
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| Q |
408 |
tacaagttctatcttttgnnnnnnntattccttatctccttcctattt |
455 |
Q |
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| T |
6226167 |
tacaagttctatcttttgaaaaaaatattccttatctccttcctattt |
6226120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 6233823 - 6233582
Alignment:
| Q |
8 |
tgtggtgcagatgtgcataaagtgtctctgattgtaaactatgatctcccaactgtgcctgaaaactatcttcaccgtataggccggagtgggaaatttg |
107 |
Q |
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|||||| ||||| ||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
6233823 |
tgtggtacagatttgcataaagcgtctctggtcgtaaactatgatctcccaactgtgcctgaaaactatcttaaccatataggccggagtgggaaatttg |
6233724 |
T |
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| Q |
108 |
ccataaacttcatgacagaggatgaagctggaatgctgatagatattcagaaattctacaatatggttatagaggagctgccatgcaattttgaagattt |
207 |
Q |
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| T |
6233723 |
ctataaacttcatgatagaggatgaggctaatatgctcatagatattcagaaattctacaacatggttatagaggagctgccatgtaattttgaagattt |
6233624 |
T |
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| Q |
208 |
gctctgatgagttaaattttgctcttctgtaaagttattggg |
249 |
Q |
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| T |
6233623 |
actctgatgagttagtttttgttcttatgtaaagttattggg |
6233582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 6249169 - 6249090
Alignment:
| Q |
149 |
gatattcagaaattctacaatatggttatagaggagctgccatgcaattttgaagatttgctctgatgagttaaattttg |
228 |
Q |
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| T |
6249169 |
gatattcagaaattctacaatgtgactatagaggagctgccatcaaatgttgctgatttgctctgatgagttaatttttg |
6249090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 6240913 - 6240841
Alignment:
| Q |
16 |
agatgtgcataaagtgtctctgattgtaaactatgatctcccaactgtgcctgaaaactatcttcaccgtata |
88 |
Q |
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| T |
6240913 |
agatgtgcaggaagtgtctctggtcataaactatgatctcccaactctacctgaaaactatctccaccgtata |
6240841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 318 - 425
Target Start/End: Complemental strand, 6240645 - 6240533
Alignment:
| Q |
318 |
tactcattacaaatctaacatatctgatttgatgttacttgaattt------tatcaaatttgtttgattaggaagttatttaacactgttatgtttaca |
411 |
Q |
| |
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||||||| | |||||||||| |||||||||||||||| ||| ||| | |||||||||||| |||| ||||||||||||||||||||| ||||| |
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| T |
6240645 |
tactcatgagaaatctaacagatctgatttgatgttatttggattgggattctctcaaatttgtttaattaagaagttatttaacactgttat-attaca |
6240547 |
T |
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| Q |
412 |
agttctatcttttg |
425 |
Q |
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| T |
6240546 |
agtgctatcttttg |
6240533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 6240765 - 6240694
Alignment:
| Q |
149 |
gatattcagaaattctacaatatggttatagaggagctgccatgcaattttgaagatttgctctgatgagtt |
220 |
Q |
| |
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| T |
6240765 |
gatatccagaaactctccaatgtgattatagaggagctgccatcaaattttgctgatttgctctcatgagtt |
6240694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 6249291 - 6249233
Alignment:
| Q |
42 |
taaactatgatctcccaactgtgcctgaaaactatcttcaccgtataggccggagtggg |
100 |
Q |
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| T |
6249291 |
taaactatgatctaccaactcaacctgaaaactatctccaccgtataggtcgtagtggg |
6249233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 17545551 - 17545799
Alignment:
| Q |
8 |
tgtggtgcagatgtgcataaagtgtctctgattgtaaactatgatctcccaactgtgcctgaaaactatcttcaccgtataggccg---gagtgggaaat |
104 |
Q |
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|||||| |||||||||||||||| |||||||| |||||||||||||||||| ||| |||||||||||||||| | ||||||||||| ||||||| ||| |
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| T |
17545551 |
tgtggtacagatgtgcataaagtatctctgatcgtaaactatgatctcccagctgcgcctgaaaactatctttatcgtataggccgccggagtgggcaat |
17545650 |
T |
|
| Q |
105 |
ttg------------ccataaacttcatgacagaggatgaagctggaatgctgatagatattcagaaattctacaatatggttatagaggagctgccatg |
192 |
Q |
| |
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||| | |||||||| |||||| ||||||| ||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17545651 |
ttggaagatgtgttgctataaactttatgacaaaggatgaggctacaatgatcatagatattcagaaattctacaatatggttatagaggagctgccata |
17545750 |
T |
|
| Q |
193 |
caattttgaagatttgctctgatgagttaaattttgctcttctgtaaag |
241 |
Q |
| |
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|||||||| || ||||||||||||||| | ||||| |||| ||||||| |
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| T |
17545751 |
taattttgatgagttgctctgatgagttcatttttgttcttatgtaaag |
17545799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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