View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4443_high_2 (Length: 424)

Name: NF4443_high_2
Description: NF4443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4443_high_2
NF4443_high_2
[»] chr1 (10 HSPs)
chr1 (1-418)||(47569568-47569994)
chr1 (16-147)||(24620992-24621123)
chr1 (1-115)||(21158333-21158446)
chr1 (28-146)||(28232288-28232405)
chr1 (27-146)||(28239928-28240040)
chr1 (1-96)||(28327087-28327187)
chr1 (211-290)||(24621195-24621274)
chr1 (210-257)||(28239756-28239803)
chr1 (211-248)||(12541139-12541176)
chr1 (23-56)||(4745252-4745285)
[»] chr2 (1 HSPs)
chr2 (212-282)||(16375759-16375829)
[»] chr4 (2 HSPs)
chr4 (23-115)||(1637686-1637780)
chr4 (218-294)||(8331990-8332067)
[»] chr5 (1 HSPs)
chr5 (12-64)||(1062283-1062336)


Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 47569994 - 47569568
Alignment:
Q  1 taaacgactaatatctctcaccgaaatataggagaaatgtatcaactccattgcaaactacaatgctaaaaatggttcaggctttcaagaaaatgtaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47569994 taaacgactaatatctctcaccgaaatataggagaaatgtatcaactccattgcaaactacaatgctaaaaatggttcaggctttcaagaaaatgtaaca 47569895  T
Q  101 agccaagacaatcataggcgtatttatataatcaaagagcataaa---------atgcgtatttatatattgcacaaatccagacattataaatattnnn 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||       
T  47569894 agccaagacaatcataggcgtatttatataatcaaagagcataaaataagaaacatgcgtatttatatattgcacaaatccagacattataaatattaaa 47569795  T
Q  192 nnnnnnnnnnnnnnncgtagtccttaaattagaaaactagaaagcatgtaatctacattccacaaaagcatggttcttttgcaccaccctagcttatttt 291  Q
                   | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47569794 aaataaaagcaaaaacatagtccttaaattagaaaactagaaagcatgtaatctacattccacaaaagcatggttcttttgcaccaccctagcttatttt 47569695  T
Q  292 catctcactcgaccacaaagagtgtgagcctccttattgctacgaaagtgaaaataccatatcatcatcaggaacacaatgcaagcaaaccaaaccaacc 391  Q
    ||| |  ||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47569694 catatatcttacacacaaagagtgtgagcctccttattgctacgaaagtgaaaataccatatcatcatcaggaacacaacgcaagcaaaccaaaccaacc 47569595  T
Q  392 attgtctttggataacgcctatgcttc 418  Q
    ||||||||||||||||| | |||||||    
T  47569594 attgtctttggataacgtcaatgcttc 47569568  T

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Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 24620992 - 24621123
Alignment:
Q  16 tctcaccgaaatataggagaaatgtatcaactccattgcaaactacaatgctaaaaatggttcaggctttcaagaaaatgtaacaagccaagacaatcat 115  Q
    ||||||||||||||| |||||| |||||||||||||||||||||| |||||||||| || ||||||||||||||||||||| |||||||||||||||||     
T  24620992 tctcaccgaaatatatgagaaacgtatcaactccattgcaaactagaatgctaaaattgattcaggctttcaagaaaatgtcacaagccaagacaatcaa 24621091  T
Q  116 aggcgtatttatataatcaaagagcataaaat 147  Q
    |||||||||| |||||||||||||||||||||    
T  24621092 aggcgtatttttataatcaaagagcataaaat 24621123  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 21158333 - 21158446
Alignment:
Q  1 taaacgactaatatctctcaccgaaatataggagaaatgtatcaactccattgcaaactacaatgctaaaaatggttcaggctttcaagaaaatgtaaca 100  Q
    |||| |||||| || |||||  ||||||||||||||||||||||||||||| |||||| ||||||||| || || ||||||||||||||||||||| |||    
T  21158333 taaaagactaacatgtctcattgaaatataggagaaatgtatcaactccatcgcaaacgacaatgctataattgattcaggctttcaagaaaatgtcaca 21158432  T
Q  101 agccaagacaatcat 115  Q
    || ||||||||||||    
T  21158433 ag-caagacaatcat 21158446  T

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Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 28232405 - 28232288
Alignment:
Q  28 ataggagaaatgtatcaactccattgcaaactacaatgctaaaaatggttcaggctttcaagaaaatgtaacaagccaagacaatcataggcgtatttat 127  Q
    ||||||||||  | |||||||||||||| |||||||||||| || || ||||||||||||||||||||| |||||   |||||| ||||||| |||||||    
T  28232405 ataggagaaacatgtcaactccattgcagactacaatgctataactgattcaggctttcaagaaaatgtcacaaggagagacaa-cataggcatatttat 28232307  T
Q  128 ataatcaaagagcataaaa 146  Q
    |||||||||||||||||||    
T  28232306 ataatcaaagagcataaaa 28232288  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 146
Target Start/End: Complemental strand, 28240040 - 28239928
Alignment:
Q  27 tataggagaaatgtatcaactccattgcaaactacaatgctaaaaatggttcaggctttcaagaaaatgtaacaagccaagacaatcataggcgtattta 126  Q
    |||||||||||||||| | ||| |||||| |||||||||||| || || ||||| ||||||||||||||| ||||      |||||||||||| ||||||    
T  28240040 tataggagaaatgtataagctc-attgcagactacaatgctataattgattcagactttcaagaaaatgtcacaa------acaatcataggcatattta 28239948  T
Q  127 tataatcaaagagcataaaa 146  Q
    ||||||||||||||||||||    
T  28239947 tataatcaaagagcataaaa 28239928  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 28327187 - 28327087
Alignment:
Q  1 taaacgactaatatctctcaccgaaatataggagaaatgtatca-----actccattgcaaactacaatgctaaaaatggttcaggctttcaagaaaatg 95  Q
    |||| ||||||||| |||||   |||||||||||||||||||||     |||||||||||||| ||||||||| || || ||||||||||||||||||||    
T  28327187 taaaagactaatatttctcattaaaatataggagaaatgtatcatatcaactccattgcaaacaacaatgctagaattgattcaggctttcaagaaaatg 28327088  T
Q  96 t 96  Q
    |    
T  28327087 t 28327087  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 211 - 290
Target Start/End: Original strand, 24621195 - 24621274
Alignment:
Q  211 gtccttaaattagaaaactagaaagcatgtaatctacattccacaaaagcatggttcttttgcaccaccctagcttattt 290  Q
    |||||| ||||||||||||| |||  | ||||||||||||| |||||||||||||| ||||||||||  |||||||||||    
T  24621195 gtcctttaattagaaaactaaaaaaaaagtaatctacattcaacaaaagcatggttgttttgcaccattctagcttattt 24621274  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 28239803 - 28239756
Alignment:
Q  210 agtccttaaattagaaaactagaaagcatgtaatctacattccacaaa 257  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||    
T  28239803 agtccttaaattagcaaactagaaagcatgtaatctacattgcacaaa 28239756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 12541176 - 12541139
Alignment:
Q  211 gtccttaaattagaaaactagaaagcatgtaatctaca 248  Q
    |||||||||||| |||||||||||||||||||||||||    
T  12541176 gtccttaaattaaaaaactagaaagcatgtaatctaca 12541139  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 4745285 - 4745252
Alignment:
Q  23 gaaatataggagaaatgtatcaactccattgcaa 56  Q
    |||||||||||||||||||||||||||| |||||    
T  4745285 gaaatataggagaaatgtatcaactccactgcaa 4745252  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 212 - 282
Target Start/End: Complemental strand, 16375829 - 16375759
Alignment:
Q  212 tccttaaattagaaaactagaaagcatgtaatctacattccacaaaagcatggttcttttgcaccacccta 282  Q
    ||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  16375829 tcctttaattagaaaactacaaagcatgtaatctacataccacaaaagcatggttcttttgtaccatccta 16375759  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 1637780 - 1637686
Alignment:
Q  23 gaaatataggagaaatgtatca---actccattgcaaactacaatgctaaaaatggttcaggctttcaagaaaatgtaacaagccaagacaatcat 115  Q
    ||||||||||||||||||||||   |||||||||||||| |||||  || || || ||||||||||||||||||||| ||||| ||||||||||||    
T  1637780 gaaatataggagaaatgtatcatcaactccattgcaaacaacaattatataattgattcaggctttcaagaaaatgtcacaag-caagacaatcat 1637686  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 8332067 - 8331990
Alignment:
Q  218 aattagaaaactagaaagcatgtaatctacattccacaaaagca-tggttcttttgcaccaccctagcttattttcat 294  Q
    ||||||| ||||||||  |||||||||||||||||| ||||  | |||||||||||||||| ||||||||||||||||    
T  8332067 aattagacaactagaatacatgtaatctacattccaaaaaaaaaatggttcttttgcaccatcctagcttattttcat 8331990  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 1062336 - 1062283
Alignment:
Q  12 tatctctcaccgaaatataggagaaatgtatc-aactccattgcaaactacaat 64  Q
    ||||||||||| ||||| |||||||| ||||| || ||||||||||||||||||    
T  1062336 tatctctcaccaaaatagaggagaaacgtatcaaattccattgcaaactacaat 1062283  T

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