View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4443_high_3 (Length: 374)
Name: NF4443_high_3
Description: NF4443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4443_high_3 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 44913204 - 44912850
Alignment:
| Q |
20 |
acacaaacaccgaacacacgatactgacctatgcatttggcaaagagagagcgatgaagaaaagcatcatgagttgaaagaatatcaaactgcttttcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44913204 |
acacaaacaccgaacacacgatactgacctatgcatttggcaaagagagagcgatgaagaaaagcatcatgagttgaaagaatatcaaactgcttttcaa |
44913105 |
T |
|
| Q |
120 |
cctcaaaccatccaacatcagtcttattattgataaacttgagtcctctaagagcatgagaagctgcagacttagtcctatcataaactttctgaggtcc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44913104 |
cctcaaaccatccaacatcagtcttattattgataaacttgagtcctctaagagcatgagaagctgcagacttagtcctatcataaactttctgaggtcc |
44913005 |
T |
|
| Q |
220 |
aacttgtttcgaaaaagaagttaatttcttcaactcctgagaaacatgtttcatacgaatcgaagcagttctaacaaaagaagcaccaaaagatcttttc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44913004 |
aacttgtttcgaaaaagaagttaatttcttcaactcctgagaaacatgtttcatacgaatcgaagcagttctaacaaaagaagcaccaaaagatcttttc |
44912905 |
T |
|
| Q |
320 |
ttctccattcctttaccaagcaaaacaagtttctcatcttcaccattgtttccag |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44912904 |
ttctccattcctttaccaagcaaaacaagtttctcatcttcaccattgtttccag |
44912850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 217 - 360
Target Start/End: Complemental strand, 44897436 - 44897293
Alignment:
| Q |
217 |
tccaacttgtttcgaaaaagaagttaatttcttcaactcctgagaaacatgtttcatacgaatcgaagcagttctaacaaaagaagcaccaaaagatctt |
316 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||| | ||| | || | ||||||||||| ||||| ||| |||||||||| ||| |
|
|
| T |
44897436 |
tccaacttgttttgaaaaagaagttaaacgagtcaactcctgagaaactttcctcagatgatttgaagcagttctcacaaacgaatcaccaaaagacctt |
44897337 |
T |
|
| Q |
317 |
ttcttctccattcctttaccaagcaaaacaagtttctcatcttc |
360 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
44897336 |
ttcttctccattcctttgccaagcaaatcaagtttctcatcttc |
44897293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 44882886 - 44882832
Alignment:
| Q |
150 |
tgataaacttgagtcctctaagagcatgagaagctgcagacttagtcctatcata |
204 |
Q |
| |
|
||||||| || |||||| | ||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
44882886 |
tgataaagttaagtcctttgagagcattagaagctgcagacgtagtcctatcata |
44882832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University