View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4443_high_4 (Length: 344)
Name: NF4443_high_4
Description: NF4443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4443_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 208 - 333
Target Start/End: Original strand, 43623828 - 43623962
Alignment:
| Q |
208 |
ggtctagttattgtacaaaattaccaataaaa--gagtatatgaatatccatgtcgtttttaa-------aattaccaatttaactccgtgattgcatgt |
298 |
Q |
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| T |
43623828 |
ggtctaataattgtacaaaattaccaataaaaaagagtacatgaatatccatgcctttttttttttttttaattaccaatttaactcggtgattgcatgt |
43623927 |
T |
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| Q |
299 |
ttttggtgtttttacagcattttaggtgggttcat |
333 |
Q |
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| T |
43623928 |
ttttggtgttttttcagcattttaggtgggttcat |
43623962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 43623586 - 43623765
Alignment:
| Q |
1 |
gaaaggacctgtgtttctttccatctcaacaccactagttctgattattacaatcttctcctctatatttctcttgggcgatataatatatcttggaagg |
100 |
Q |
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| T |
43623586 |
gaaagggcctgtgtttcttgctatgtcaacaccactagctcttattattacaatcctctcctctatatttctcttcggtgatataataagtttgggaagg |
43623685 |
T |
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| Q |
101 |
taattctattatatctactaattaataaatttcgaaacatctatctggttttgtctttgtttgtgttcgttaattctcaaattag |
185 |
Q |
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| T |
43623686 |
taattc-----catccacttcttagtaaatttctaaacatttatctagttttgtctttatttatggttgttaattcacaaattag |
43623765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 42709070 - 42709004
Alignment:
| Q |
119 |
taattaataaatttcgaaacatctatctggttttgtctttgtttgtgttcgttaattctcaaattag |
185 |
Q |
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| T |
42709070 |
taattaataaatttcgaaacatctatctagttttgtctttatttgtgtttgttaattctcaaattag |
42709004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 42709135 - 42709099
Alignment:
| Q |
39 |
ttctgattattacaatcttctcctctatatttctctt |
75 |
Q |
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| T |
42709135 |
ttctgattattacaatcttctcctctataattctctt |
42709099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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