View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4443_high_6 (Length: 309)
Name: NF4443_high_6
Description: NF4443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4443_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 6226560 - 6226845
Alignment:
| Q |
1 |
accacaaagctgggggtcggtggtaatgagaacttgaggagagccagactgggnnnnnnnctcgcgcgtaacgatatccccgatgtcctgggaaaa-aac |
99 |
Q |
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| T |
6226560 |
accacaaagctgggggtcggtggtaatgagaacttgaggagagctagactgggaaaaaaactcgcgcgtaactatatccctaatgtcctgggaaaaaaac |
6226659 |
T |
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| Q |
100 |
ttgaggatgacaaacactttatgatctctgcttcgcaactcgtccatgagccagtccactttgtccatggtattcacaaagatgatacaatgagtgatgg |
199 |
Q |
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| T |
6226660 |
ttgaggatgacaaacactttatgatctctgcttcgcaactcgtccatgagccagtccactttgtccatggtattcacaaagacgatacaatgagtgatgg |
6226759 |
T |
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| Q |
200 |
atttagctttaagggtcagctcaaagatgtcgcatagtgtctccagcttccactcttccatgtcaacattcacataaaactgcttg |
285 |
Q |
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| T |
6226760 |
atttagctttaagggtcagctcaaatatgtcacatagtgtctctagcttccactcttccttgtcaacatccacataaaactgcttg |
6226845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 120 - 285
Target Start/End: Original strand, 6233932 - 6234100
Alignment:
| Q |
120 |
atgatctctgcttcgcaactcgtccatgagccagtccactttgtccatggtattcacaaagatgatacaatgagtgatggattta---gctttaagggtc |
216 |
Q |
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| T |
6233932 |
atgatctctgcttcgcatcttgtccgtgagccagtccactttgtcgatagtattcacaaagacgatacaatgagtgatggatttataagctttaagggtc |
6234031 |
T |
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| Q |
217 |
agctcaaagatgtcgcatagtgtctccagcttccactcttccatgtcaacattcacataaaactgcttg |
285 |
Q |
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| T |
6234032 |
agctcaaagatgtcgcatagtgtctctagcttccactcttccttgtcaacatccacataaaactgcttg |
6234100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 6233829 - 6233867
Alignment:
| Q |
12 |
gggggtcggtggtaatgagaacttgaggagagccagact |
50 |
Q |
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| T |
6233829 |
gggggtcggtggtaatgagaacttgaggagagccagact |
6233867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 6241022 - 6241115
Alignment:
| Q |
112 |
aacactttatgatctctgcttcgcaactcgtccatgagccagtccactttgtccatggtattcacaaagatgatacaatgagtgatggatttag |
205 |
Q |
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| T |
6241022 |
aacactgtataatatctgcttcgcattttgtccatgagccagtccactttgcgctcggtattcacaaaaacaatgcaatgagtgatgaatttag |
6241115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 6249433 - 6249513
Alignment:
| Q |
119 |
tatgatctctgcttcgcaactcgtccatgagccagtccactttgtccatggtattcacaaagatgatacaatgagtgatgg |
199 |
Q |
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| T |
6249433 |
tatgatctctgcttcgcatcttatccgtaagccagtccactttccgcctggtattcacaaaaatgacactttgagtgatgg |
6249513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 104 - 285
Target Start/End: Complemental strand, 17545452 - 17545271
Alignment:
| Q |
104 |
ggatgacaaacactttatgatctctgcttcgcaactcgtccatgagccagtccactttgtccatggtattcacaaagatgatacaatgagtgatggattt |
203 |
Q |
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||||||| |||||||||||||||||||| ||| || |||| ||||||| ||||||||| | |||||| |||||||| |||||||||||||| ||||| |
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| T |
17545452 |
ggatgactgacactttatgatctctgctttgcatcttgtccgtgagccaatccactttgcacctggtatccacaaagacaatacaatgagtgatcgattt |
17545353 |
T |
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| Q |
204 |
agctttaagggtcagctcaaagatgtcgcatagtgtctccagcttccactcttccatgtcaacattcacataaaactgcttg |
285 |
Q |
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| T |
17545352 |
agctttaacggtcagctcaaagatgtcgcatagtgtctctagcttccactcttccttctcaacatcgacataaaactgcttg |
17545271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 17545544 - 17545504
Alignment:
| Q |
13 |
ggggtcggtggtaatgagaacttgaggagagccagactggg |
53 |
Q |
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| T |
17545544 |
ggggtctgtggtaatgagaacatgaggagagccagactggg |
17545504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 42718775 - 42718710
Alignment:
| Q |
237 |
tgtctccagcttccactcttccatgtcaacattcacataaaactgcttggtactctccaggatcaa |
302 |
Q |
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| T |
42718775 |
tgtctctagtttccactcttccttgtcaacattcacgtagaactgcttgataccctcaagggtcaa |
42718710 |
T |
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