View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4443_high_7 (Length: 308)

Name: NF4443_high_7
Description: NF4443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4443_high_7
NF4443_high_7
[»] chr3 (20 HSPs)
chr3 (37-216)||(37742723-37742899)
chr3 (40-215)||(44380252-44380427)
chr3 (46-213)||(33509684-33509851)
chr3 (216-308)||(26529808-26529900)
chr3 (43-138)||(50934501-50934596)
chr3 (42-188)||(47426350-47426496)
chr3 (35-105)||(32319473-32319543)
chr3 (40-108)||(10179868-10179936)
chr3 (42-138)||(47186175-47186271)
chr3 (40-211)||(35094544-35094717)
chr3 (42-138)||(31187145-31187241)
chr3 (40-108)||(10018671-10018739)
chr3 (42-138)||(42664673-42664769)
chr3 (40-215)||(17466271-17466446)
chr3 (42-138)||(34029366-34029462)
chr3 (44-194)||(39498689-39498838)
chr3 (40-108)||(10123211-10123279)
chr3 (161-215)||(19619217-19619271)
chr3 (43-95)||(21963073-21963125)
chr3 (57-97)||(25859037-25859077)
[»] chr2 (13 HSPs)
chr2 (40-214)||(34392080-34392254)
chr2 (40-215)||(7381690-7381864)
chr2 (56-216)||(23863800-23863958)
chr2 (40-215)||(37357915-37358094)
chr2 (40-138)||(21603957-21604055)
chr2 (65-216)||(4779608-4779759)
chr2 (37-215)||(4775629-4775808)
chr2 (152-216)||(21606149-21606213)
chr2 (63-215)||(25275620-25275771)
chr2 (47-196)||(14565870-14566019)
chr2 (73-215)||(41095784-41095926)
chr2 (42-101)||(37811091-37811150)
chr2 (180-216)||(919447-919483)
[»] chr5 (15 HSPs)
chr5 (40-214)||(19357261-19357434)
chr5 (40-215)||(11607532-11607707)
chr5 (47-215)||(33858536-33858704)
chr5 (42-216)||(1826259-1826433)
chr5 (40-176)||(39570080-39570216)
chr5 (40-138)||(9827786-9827884)
chr5 (58-215)||(33271630-33271787)
chr5 (42-138)||(38010689-38010785)
chr5 (42-138)||(13015381-13015477)
chr5 (42-138)||(29989962-29990058)
chr5 (42-109)||(13086753-13086820)
chr5 (42-138)||(13478120-13478216)
chr5 (97-191)||(42148201-42148295)
chr5 (43-138)||(13421085-13421180)
chr5 (179-215)||(9827903-9827939)
[»] chr4 (17 HSPs)
chr4 (42-215)||(12473704-12473877)
chr4 (42-215)||(12528113-12528286)
chr4 (40-209)||(35869575-35869744)
chr4 (40-215)||(22343335-22343510)
chr4 (43-190)||(33249397-33249544)
chr4 (43-213)||(52910050-52910219)
chr4 (40-215)||(51811912-51812087)
chr4 (40-198)||(21260792-21260950)
chr4 (40-215)||(55590480-55590644)
chr4 (42-138)||(52012778-52012874)
chr4 (34-128)||(34829168-34829262)
chr4 (42-138)||(9799438-9799534)
chr4 (46-101)||(49998486-49998541)
chr4 (146-215)||(1796654-1796723)
chr4 (43-138)||(49999663-49999758)
chr4 (154-216)||(35781021-35781083)
chr4 (40-83)||(33174516-33174560)
[»] chr1 (12 HSPs)
chr1 (42-215)||(2569037-2569209)
chr1 (42-213)||(29119324-29119495)
chr1 (40-211)||(32676134-32676305)
chr1 (42-216)||(46435462-46435624)
chr1 (40-191)||(8462127-8462277)
chr1 (42-138)||(8809715-8809811)
chr1 (40-135)||(25161307-25161402)
chr1 (40-114)||(7214510-7214584)
chr1 (156-215)||(15387156-15387215)
chr1 (43-91)||(16679821-16679868)
chr1 (42-101)||(35998252-35998311)
chr1 (179-214)||(36771533-36771568)
[»] chr6 (8 HSPs)
chr6 (43-216)||(1211841-1212014)
chr6 (42-215)||(5403874-5404047)
chr6 (40-215)||(32644836-32645009)
chr6 (37-107)||(11753162-11753232)
chr6 (42-138)||(34245567-34245663)
chr6 (171-216)||(10503256-10503301)
chr6 (43-135)||(11113557-11113649)
chr6 (146-197)||(26526385-26526436)
[»] chr7 (9 HSPs)
chr7 (40-215)||(35341534-35341709)
chr7 (42-215)||(48250154-48250329)
chr7 (40-215)||(48072387-48072560)
chr7 (66-215)||(32694568-32694717)
chr7 (46-135)||(31306951-31307041)
chr7 (146-197)||(40856949-40857000)
chr7 (43-101)||(36776062-36776120)
chr7 (42-138)||(40893116-40893213)
chr7 (42-106)||(40856392-40856456)
[»] chr8 (8 HSPs)
chr8 (42-216)||(24337827-24338001)
chr8 (40-215)||(11254026-11254200)
chr8 (34-209)||(41179567-41179742)
chr8 (49-215)||(18168392-18168559)
chr8 (49-215)||(18631949-18632116)
chr8 (50-192)||(4708328-4708470)
chr8 (42-138)||(1514803-1514899)
chr8 (43-94)||(32825954-32826005)
[»] scaffold0229 (1 HSPs)
scaffold0229 (43-215)||(13003-13176)
[»] scaffold0032 (1 HSPs)
scaffold0032 (40-215)||(34192-34365)
[»] scaffold0519 (1 HSPs)
scaffold0519 (40-215)||(11193-11367)
[»] scaffold0263 (2 HSPs)
scaffold0263 (43-91)||(23094-23142)
scaffold0263 (43-138)||(23174-23263)
[»] scaffold0041 (1 HSPs)
scaffold0041 (42-138)||(73071-73168)


Alignment Details
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 37 - 216
Target Start/End: Original strand, 37742723 - 37742899
Alignment:
Q  37 gggttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgata 136  Q
    ||||||||||||||||   ||||||||||||||||||||| |||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  37742723 gggttccacttgtgta---ttaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattaccaatgctttatttgata 37742819  T
Q  137 tannnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatccc 216  Q
    ||       |||| |||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  37742820 tatttttttaaagagtgtgccacgtggcacattataattgggcaatggtatataccattatgttacacaagtgctatccc 37742899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 44380252 - 44380427
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatan 139  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| |||||| ||||||||| |||  ||||||||||||||||||     
T  44380252 ttccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttataaatgctttatttgatatac 44380351  T
Q  140 nnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
          |||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| |||||    
T  44380352 ttttttaaagggtgtgccacgtgacacattctaattggacaatggtatataccattatggtacacaagtgttatcc 44380427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 213
Target Start/End: Original strand, 33509684 - 33509851
Alignment:
Q  46 ttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannnnnnn 145  Q
    ||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||| |||   |||||||||||||| ||           
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattactttatagatgctttatttgatgtattttttt 33509783  T
Q  146 aaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctat 213  Q
    ||||| |||||||| || |||||| |||||  |||||| |||||||||||||  ||||||||||||||    
T  33509784 aaaggatgtgccacatggcacattctaattagacaatgatatataccattattgtacacaagtgctat 33509851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 216 - 308
Target Start/End: Complemental strand, 26529900 - 26529808
Alignment:
Q  216 ccattcttgcatgagtaaagtaaagggttttgctaattgaaggaaaaatatccataacaaaaaattgggtccttacatatttattgactatga 308  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  26529900 ccattcttgaatgagtgaagtaaatggttttgctaattgaaggaaaaatatccataccaaaaaattgggtccttgcatatttattgactatga 26529808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 50934501 - 50934596
Alignment:
Q  43 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatata 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||  ||||| ||||||||||||    
T  50934501 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttactttataaatgcattatttgatata 50934596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 188
Target Start/End: Original strand, 47426350 - 47426496
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannn 141  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||| |||| |||   |||||||||||||||||       
T  47426350 ccacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttactttatagatgctttatttgatatattt 47426449  T
Q  142 nnnnaaagggtgtgccacgtgacacattataattgaacaatggtata 188  Q
        |||||||||||||| ||  ||||| ||||||  ||||||||||    
T  47426450 ttttaaagggtgtgccacatggtacattctaattgggcaatggtata 47426496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 32319543 - 32319473
Alignment:
Q  35 tggggttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctac 105  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32319543 tgggattctacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctac 32319473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 10179936 - 10179868
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaa 108  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10179936 ttccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 47186175 - 47186271
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatata 138  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||| ||||||| |||| |||  ||| ||||||||||||||    
T  47186175 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatata 47186271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 211
Target Start/End: Original strand, 35094544 - 35094717
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaatta--gagtgtgccacctaccaatattacattaccaatgctttatttgatat 137  Q
    ||||||||  |||||||||| |||||| ||||||||||||||| | |||||  |||| |||||||||||||| |||| |||  |||  ||||||||||||    
T  35094544 ttccacttcagtaccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttactttataaatattttatttgatat 35094643  T
Q  138 annnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgct 211  Q
    |       ||||| |||| ||||||||||||| |||||| |||||| || ||||||||||| ||||||| ||||    
T  35094644 atttttttaaaggatgtgtcacgtgacacattctaattggacaatgatacataccattatggtacacaaatgct 35094717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 31187241 - 31187145
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatata 138  Q
    |||||| ||||||||||||||||||||| |||||| ||||| ||||| |||||||||||| ||||||| |||| |||  |||| |||||||||||||    
T  31187241 ccacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatata 31187145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 10018739 - 10018671
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaa 108  Q
    |||||||||||||||||||| ||||||||| ||||||||||||| |||| | |||||||||||||||||    
T  10018739 ttccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 42664673 - 42664769
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatata 138  Q
    |||||||||||||||||||||||||| | |||||| ||||| ||||| |||||||||||| ||||||| |||  |||  |||| |||||||||||||    
T  42664673 ccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttattttataaatgttttatttgatata 42664769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 17466271 - 17466446
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatan 139  Q
    ||||| |||||||| ||| |  || |||||||||||| |||||| ||||||||||||| |||||| |||| |||| |||  |||| |||| ||||||||     
T  17466271 ttccatttgtgtacgattcaaatatcaatggtatatatcattggtcaattagagtgtgtcacctatcaatgttactttataaatgatttagttgatatat 17466370  T
Q  140 nnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
          ||||||| ||||||||  |||| | ||| ||| |||||||||||||||||| | ||||||| || |||||    
T  17466371 ttttttaaagggtatgccacgtaccacaatctaactgagcaatggtatataccattacggtacacaaatgttatcc 17466446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 34029462 - 34029366
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatata 138  Q
    |||||||| ||||||||||||||||||| |||||| |||||  |||| |||||||||||| ||| ||| |||| |||  |||| |||||||||||||    
T  34029462 ccacttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttactttataaatgttttatttgatata 34029366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 39498838 - 39498689
Alignment:
Q  44 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannnnn 143  Q
    |||||||||||||||| ||||||||| ||||||  ||||| |||||| |||||| |||||| | || |||  |||  |||  ||||||| |||||         
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcacctatcgatgttattttataaatattttatttaatataatttt 39498739  T
Q  144 nnaaagggtgtgccacgtgacacattataattgaacaatggtatataccat 194  Q
      ||||| |||||||||||||||||| ||||||| |||| |||||||||||    
T  39498738 t-aaaggatgtgccacgtgacacattctaattgagcaatagtatataccat 39498689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 10123279 - 10123211
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaa 108  Q
    |||||||||||||||||||| ||| ||||| |||||| || ||| |||| | |||||||||||||||||    
T  10123279 ttccacttgtgtaccattaaagtatcaatgttatatatcaatggtcaataaaagtgtgccacctaccaa 10123211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 19619217 - 19619271
Alignment:
Q  161 tgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
    ||||||||| ||||||  |||||||||||||||||||| |||||| |||||||||    
T  19619217 tgacacattttaattgggcaatggtatataccattatggtacacatgtgctatcc 19619271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 21963125 - 21963073
Alignment:
Q  43 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtg 95  Q
    ||||| ||||||||||||||| ||||| |||||| ||||| ||||| ||||||    
T  21963125 cacttatgtaccattaaggtatcaatgttatataacattgaccaataagagtg 21963073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 25859077 - 25859037
Alignment:
Q  57 taaggtaccaatggtatataccattggccaattagagtgtg 97  Q
    |||| |||||||| |||||| ||||||||||||||||||||    
T  25859077 taagctaccaatgttatataacattggccaattagagtgtg 25859037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 40 - 214
Target Start/End: Complemental strand, 34392254 - 34392080
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatan 139  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||  ||||||||||||||||||     
T  34392254 ttccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttactttataaatgctttatttgatatat 34392155  T
Q  140 nnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatc 214  Q
          |||||||||||||| || |||| | |||||| ||||||||||||||||||||| |||||||||||||||    
T  34392154 ttttttaaagggtgtgccacatggcacaatctaattggacaatggtatataccattatggtacacaagtgctatc 34392080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 7381690 - 7381864
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatan 139  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||| |||  ||| ||||||||||||||     
T  7381690 ttccgcttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttactttataaattctttatttgatata- 7381788  T
Q  140 nnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
          ||||| |||| || |||||||||| ||||||  |||| ||||||||||||||  ||| ||||| ||||||    
T  7381789 ttttttaaaggatgtgtcatgtgacacattttaattgggcaatagtatataccattatagtacgcaagttctatcc 7381864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 216
Target Start/End: Complemental strand, 23863958 - 23863800
Alignment:
Q  56 ttaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannnnnnnaaagggtgtg 155  Q
    ||||||||||||||||||||   ||||| ||||||||||||||||||||||||| |||| |||  ||||||||||||||||||       ||||||||||    
T  23863958 ttaaggtaccaatggtatatt--attggtcaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatatttttaaagggtgtg 23863861  T
Q  156 ccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatccc 216  Q
    |||| || |||||| |||||| |||||| |||||| ||||||| ||||| |||||||||||    
T  23863860 ccacatggcacattctaattggacaatgatatatatcattatggtacactagtgctatccc 23863800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 215
Target Start/End: Complemental strand, 37358094 - 37357915
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgata--- 136  Q
    ||||||||||||| |||||||||||||||| |||||||||||| | |||||||||||| |||||| |||| |||| |||  |||||||||||| |||       
T  37358094 ttccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttataaatgctttatttaatattt 37357995  T
Q  137 -tannnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
     |        |||   |||||||||||||||||| |||||| |||||||||||||| |||||| ||||||||||||||||    
T  37357994 ttttttttttaaactatgtgccacgtgacacattctaattggacaatggtatatactattatgatacacaagtgctatcc 37357915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 21603957 - 21604055
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatata 138  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||  ||||||||||| |||| |||  |||| |||||||||||||    
T  21603957 ttccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttactttataaatgttttatttgatata 21604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 65 - 216
Target Start/End: Original strand, 4779608 - 4779759
Alignment:
Q  65 caatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtgac 164  Q
    |||| |||||||||||||  || ||| |||||||| |||| |||| |||| |||  ||| ||||||||||||||       ||||| |||| ||||||||    
T  4779608 caatagtatataccattgatcacttatagtgtgccgcctaacaatgttactttataaatactttatttgatatatttttttaaaggatgtgtcacgtgac 4779707  T
Q  165 acattataattgaacaatggtatataccattatgttacacaagtgctatccc 216  Q
    ||||| |||||| ||||||||||||||||||||| |||||||||| ||||||    
T  4779708 acattctaattggacaatggtatataccattatgatacacaagtgttatccc 4779759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 215
Target Start/End: Original strand, 4775629 - 4775808
Alignment:
Q  37 gggttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaa-tgctttatttgat 135  Q
    |||| |||||| |||||||||||| |||||||| ||||||  |||||||||||||| |||  || |||||||| |||| |||  || || ||||||| ||    
T  4775629 gggtaccacttatgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaattgttttatttaat 4775728  T
Q  136 atannnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
    |||       ||||| |||||||| || |||| | |||||| ||||||||||||||||||||| ||||||| || |||||    
T  4775729 atatttttttaaaggatgtgccacatggcacaatttaattggacaatggtatataccattatggtacacaaatgttatcc 4775808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 21606149 - 21606213
Alignment:
Q  152 tgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatccc 216  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||| |||| ||||||||||||    
T  21606149 tgtgccacgtgacacattctaattggacaatggtatataccattatgatacagaagtgctatccc 21606213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 215
Target Start/End: Complemental strand, 25275771 - 25275620
Alignment:
Q  63 accaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtg 162  Q
    |||||| || ||||| ||||  ||||||  |||||||||||| |||| |||| ||   ||| ||||||||||||||       ||||| |||||||||||    
T  25275771 accaatagtttatacgattgatcaattattgtgtgccacctatcaatgttactttta-aatactttatttgatatacttttttaaaggatgtgccacgtg 25275673  T
Q  163 acacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
    | ||||| |||||| |||||| |||||||||||||| |||| |||||||||||    
T  25275672 atacattctaattggacaatgatatataccattatgatacagaagtgctatcc 25275620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 196
Target Start/End: Complemental strand, 14566019 - 14565870
Alignment:
Q  47 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannnnnnna 146  Q
    ||||||||| ||||||||||||| |||||| |||||  ||| |||||||||| || |||||||||||  |||  | | ||| ||||||||||       |    
T  14566019 tgtgtaccactaaggtaccaatgttatatatcattgatcaagtagagtgtgctacataccaatattattttataagtacttcatttgatatagtttttta 14565920  T
Q  147 aagggtgtgccacgtgacacattataattgaacaatggtatataccatta 196  Q
    |||| ||||||| || ||||||| ||| ||| |||| ||||||| |||||    
T  14565919 aaggatgtgccatgtaacacattttaactgaccaattgtatataacatta 14565870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 215
Target Start/End: Complemental strand, 41095926 - 41095784
Alignment:
Q  73 tataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtgacacattata 172  Q
    ||||| ||||| |||||||||||  |||||||||||| |||| |||  |||||||||||||||| |       ||| ||| |||||| || ||||   ||    
T  41095926 tatacaattggtcaattagagtgcaccacctaccaatgttactttataaatgctttatttgatagatttttttaaaaggtatgccacatggcacacccta 41095827  T
Q  173 attgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
    | ||  |||||||||||||||||||| |||  |||||||||||    
T  41095826 aatggccaatggtatataccattatggtacctaagtgctatcc 41095784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 37811091 - 37811150
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccac 101  Q
    ||||||||||||||||  | |||||||| |||||| ||||||||||| | ||||||||||    
T  37811091 ccacttgtgtaccattgggataccaatgttatataacattggccaatgaaagtgtgccac 37811150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 919483 - 919447
Alignment:
Q  180 aatggtatataccattatgttacacaagtgctatccc 216  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  919483 aatggtataaaccattatggtacacaagtgctatccc 919447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 8e-55; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 40 - 214
Target Start/End: Complemental strand, 19357434 - 19357261
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatan 139  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||     
T  19357434 ttccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattactttataaatgctttatttgatata- 19357336  T
Q  140 nnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatc 214  Q
          ||||| ||| |||||||||||||| |||||| |||||| |||||||||||||| |||||||||||||||    
T  19357335 ttttttaaaggatgtcccacgtgacacattctaattggacaatgatatataccattatggtacacaagtgctatc 19357261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 40 - 215
Target Start/End: Complemental strand, 11607707 - 11607532
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatan 139  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||  |||| |||||||||||||     
T  11607707 ttccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttataaatgttttatttgatatac 11607608  T
Q  140 nnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
          ||||||||||||||| | |||||| |||||| ||||||||||||| ||||||| ||||||||||||||||    
T  11607607 ttttttaaagggtgtgccacgggccacattctaattggacaatggtatatatcattatggtacacaagtgctatcc 11607532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 47 - 215
Target Start/End: Complemental strand, 33858704 - 33858536
Alignment:
Q  47 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannnnnnna 146  Q
    |||||||||||||||||||||| ||||||| ||||| ||||||| |||||||||||||||||| |||| |||  |||| |||||||||||||       |    
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatatactttttta 33858605  T
Q  147 aagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
    ||||||||||||||||||||||| ||||||  |||||||||||||||||||| ||||||||||||||||    
T  33858604 aagggtgtgccacgtgacacattctaattgggcaatggtatataccattatggtacacaagtgctatcc 33858536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 42 - 216
Target Start/End: Original strand, 1826259 - 1826433
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannn 141  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||    |||||||||||||||||       
T  1826259 ccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattactttgtagatgctttatttgatatattt 1826358  T
Q  142 nnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatccc 216  Q
        ||||  |||||||| || |||||| ||||||||||||| |||||| ||||||| |||||||||| ||||||    
T  1826359 ttttaaagtatgtgccacatggcacattttaattgaacaatgatatatatcattatgatacacaagtgatatccc 1826433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 176
Target Start/End: Complemental strand, 39570216 - 39570080
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatan 139  Q
    ||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||| |||| |||  |||| |||||||||||||     
T  39570216 ttccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatac 39570117  T
Q  140 nnnnnnaaagggtgtgccacgtgacacattataattg 176  Q
          |||||||||||||| ||||| ||| ||||||    
T  39570116 ttttttaaagggtgtgccacctgacatattctaattg 39570080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 9827786 - 9827884
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatata 138  Q
    ||||||||||||||||||||||||||||||||||||||| || | |||||||||||| ||||||||||||||||| |||  |||  |||||||||||||    
T  9827786 ttccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattactttataaatattttatttgatata 9827884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 215
Target Start/End: Original strand, 33271630 - 33271787
Alignment:
Q  58 aaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannnnnnnaaagggtgtgcc 157  Q
    |||||||||||| |||||| |||||||||||||||||||| || ||| |||| |||| | |  ||||||||||||||||||       ||||| || |||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttacttgataaatgctttatttgatatatttttttaaaggatgcgcc 33271729  T
Q  158 acgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
    ||||| |||||| ||||||  |||| ||||||||||||||| |||| |||||||||||    
T  33271730 acgtggcacattctaattgggcaatagtatataccattatggtacataagtgctatcc 33271787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 38010785 - 38010689
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatata 138  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||| ||||||| |||| |||  ||| ||||||||||||||    
T  38010785 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatata 38010689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 13015381 - 13015477
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatata 138  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||| ||||||| |||| |||  |||  |||||||||||||    
T  13015381 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatattttatttgatata 13015477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 29989962 - 29990058
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatata 138  Q
    |||||||||||||||||||||| ||||| |||||| ||||| ||||| |||||||||||| ||||||| |||| |||  |||| |||||||||||||    
T  29989962 ccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatata 29990058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 13086753 - 13086820
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaat 109  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||| |||||||    
T  13086753 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaat 13086820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 13478216 - 13478120
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatata 138  Q
    |||||||||||||||||||| ||||||| |||||| ||||| ||||| |||||||||||| ||||| | |||| |||  |||  |||||||||||||    
T  13478216 ccacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttactttataaatattttatttgatata 13478120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 42148201 - 42148295
Alignment:
Q  97 gccacctaccaatattacattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatatac 191  Q
    ||||||||||||| |||| |||  |||| |||||||||||||       ||||||||| ||||||  |||||| |||||||||||||||||||||    
T  42148201 gccacctaccaatgttactttataaatgttttatttgatatatttttttaaagggtgtaccacgttgcacattctaattgaacaatggtatatac 42148295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 13421180 - 13421085
Alignment:
Q  43 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatata 138  Q
    ||||||||||||||||||||| ||||| |||||| |||||  |||| |||||||  ||  || |||| |||| |||  |||||||||||| |||||    
T  13421180 cacttgtgtaccattaaggtatcaatgttatataacattgatcaataagagtgtatcaaatatcaatgttactttataaatgctttatttaatata 13421085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 9827903 - 9827939
Alignment:
Q  179 caatggtatataccattatgttacacaagtgctatcc 215  Q
    |||||||||||||||||||| |||||||||| |||||    
T  9827903 caatggtatataccattatggtacacaagtgttatcc 9827939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 8e-55; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 42 - 215
Target Start/End: Original strand, 12473704 - 12473877
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannn 141  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||   |||||||||||||||||       
T  12473704 ccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatattt 12473803  T
Q  142 nnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
        |||||||||| ||| ||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||    
T  12473804 ttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctatcc 12473877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 42 - 215
Target Start/End: Original strand, 12528113 - 12528286
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannn 141  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||   |||||||||||||||||       
T  12528113 ccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatattt 12528212  T
Q  142 nnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
        |||||||||| ||| ||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||    
T  12528213 ttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctatcc 12528286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 35869744 - 35869575
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatan 139  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||  ||  |||| |||||||||||||     
T  35869744 ttccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactatataaatgttttatttgatatac 35869645  T
Q  140 nnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtg 209  Q
          |||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||    
T  35869644 ttttttaaagggtgtgccacgtgacacattctaattgaacaatggtatataccattatggtagacaagtg 35869575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 22343335 - 22343510
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatan 139  Q
    |||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||| || ||| |||| |||| |||  ||||||||||||||||||     
T  22343335 ttccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttactttataaatgctttatttgatatat 22343434  T
Q  140 nnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
          ||||| |||||||| ||||||||| ||||||||||||| |||||||||||||| |||||| ||| |||||    
T  22343435 tattttaaaggatgtgccacatgacacattctaattgaacaatgatatataccattatggtacacaggtgatatcc 22343510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 190
Target Start/End: Complemental strand, 33249544 - 33249397
Alignment:
Q  43 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannnn 142  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| |||| |||  ||||||||||||||||||        
T  33249544 cacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttactttataaatgctttatttgatatatatt 33249445  T
Q  143 nnnaaagggtgtgccacgtgacacattataattgaacaatggtatata 190  Q
       |||||||||||||| || |||| | ||||||| ||||| ||||||    
T  33249444 tttaaagggtgtgccacatggcacaatctaattgagcaatgatatata 33249397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 43 - 213
Target Start/End: Complemental strand, 52910219 - 52910050
Alignment:
Q  43 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannnn 142  Q
    |||||||||||||| | |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||  |||||||||||||||| |        
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattactttataaatgctttatttgata-aaaaa 52910121  T
Q  143 nnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctat 213  Q
       ||| ||| ||||||||| ||||   ||||||| |||||||||||||||| ||| |||| |||||||||    
T  52910120 attaaaaggtatgccacgtggcacaccctaattgatcaatggtatataccataatggtacataagtgctat 52910050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 51811912 - 51812087
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatan 139  Q
    ||||||| |||||||||||||||| ||| | ||||||  |||||||||||||||| |||||||||||||| |||| |||  |||  ||| |||||||||     
T  51811912 ttccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttataaattttttttttgatatat 51812011  T
Q  140 nnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
          ||||||||||||| |||||||||| |||||| | ||||||||||||||||||| || ||||||| |||||    
T  51812012 ttttttaaagggtgtgccatgtgacacattctaattggataatggtatataccattatgatatacaagtgttatcc 51812087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 198
Target Start/End: Original strand, 21260792 - 21260950
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatan 139  Q
    |||||||| | ||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||| |||| |||  |||| |||||||||||||     
T  21260792 ttccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatat 21260891  T
Q  140 nnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatg 198  Q
          |||||||||||||| || |||||| ||||||   |||| ||||||||||||||    
T  21260892 ttttttaaagggtgtgccacatggcacattctaattgggtaatgttatataccattatg 21260950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 55590480 - 55590644
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatan 139  Q
    ||||||||||||||||||||||||||||||||||||| |||||  |||||| |||||| ||||||||||| |||           ||||||||||||||     
T  55590480 ttccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgtta-----------ctttatttgatatac 55590568  T
Q  140 nnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
          ||||| |||||||||||||||||| ||||||  |||||| ||||||||||||| ||| ||||||||||||    
T  55590569 ttttttaaaggatgtgccacgtgacacattctaattgggcaatggaatataccattatggtacgcaagtgctatcc 55590644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 52012778 - 52012874
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatata 138  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||| | |||||||||| ||||||| |||| |||  |||| |||||||||||||    
T  52012778 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatgttttatttgatata 52012874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 34829262 - 34829168
Alignment:
Q  34 ttggggttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgcttt 128  Q
    ||||| || ||||| ||||| ||||||||||||||| |||||| || |||||||||| |||||| ||||||||||| |||| |||  ||||||||    
T  34829262 ttgggatttcacttatgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttactttataaatgcttt 34829168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 9799534 - 9799438
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatata 138  Q
    |||||||| ||||||||||||||||||| |||||| ||||| ||||  ||| |||||||| ||||||| |||| |||  |||| ||||||| |||||    
T  9799534 ccacttgtataccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttactttataaatgttttatttaatata 9799438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 49998486 - 49998541
Alignment:
Q  46 ttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccac 101  Q
    |||||||||||||||||||||||  |||||| |||||||||||||| |||||||||    
T  49998486 ttgtgtaccattaaggtaccaatattatatatcattggccaattagggtgtgccac 49998541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 1796654 - 1796723
Alignment:
Q  146 aaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
    ||||| |||| |||||| |||| | |||||| ||||||||||||||||||||| |||||||||| |||||    
T  1796654 aaaggatgtgtcacgtggcacaatttaattggacaatggtatataccattatggtacacaagtgttatcc 1796723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 49999758 - 49999663
Alignment:
Q  43 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatata 138  Q
    |||||||||||||| ||| ||| |||| ||| |  |||||| ||||||||||||| ||| ||||||| |||  |||  ||||||||||||||||||    
T  49999758 cacttgtgtaccatcaagatactaatgttatgtgtcattggtcaattagagtgtgtcacataccaatgttattttataaatgctttatttgatata 49999663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 35781021 - 35781083
Alignment:
Q  154 tgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatccc 216  Q
    ||||||||| |||||| ||||||  |||||||||||||||||||| ||| |||||| ||||||    
T  35781021 tgccacgtggcacattctaattgggcaatggtatataccattatggtacgcaagtgatatccc 35781083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 33174516 - 33174560
Alignment:
Q  40 ttccacttgtgtaccattaagg-taccaatggtatataccattgg 83  Q
    |||||||||||||||||||||| ||||||  ||||||||||||||    
T  33174516 ttccacttgtgtaccattaaggttaccaagagtatataccattgg 33174560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 42 - 215
Target Start/End: Original strand, 2569037 - 2569209
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannn 141  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       
T  2569037 ccacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaatgctttatttgatata-tt 2569135  T
Q  142 nnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
        ||||||||||||| ||| |||||| |||||   |||| ||||||| ||||||||||||||||||||||||    
T  2569136 ttttaaagggtgtgccatgtggcacattctaattaggcaatagtatatatcattatgttacacaagtgctatcc 2569209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 42 - 213
Target Start/End: Complemental strand, 29119495 - 29119324
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannn 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||| |||   |||||||||||||||||       
T  29119495 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttactttatagatgctttatttgatatattt 29119396  T
Q  142 nnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctat 213  Q
        |||||||||||||| || |||||| ||||||  |||| ||||||||| ||||| ||||||| ||||||    
T  29119395 ttttaaagggtgtgccacatggcacattctaattgggcaattgtatatacccttatggtacacaaatgctat 29119324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 40 - 211
Target Start/End: Original strand, 32676134 - 32676305
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatan 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||| |||| |||  ||||||||||||||||||     
T  32676134 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttactttataaatgctttatttgatatat 32676233  T
Q  140 nnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgct 211  Q
          ||||  |||||||| || |||| | |||||| ||||||||||||||||||||  ||||||| ||||    
T  32676234 ttttttaaagcatgtgccacatggcacaatctaattggacaatggtatataccattatagtacacaaatgct 32676305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 216
Target Start/End: Complemental strand, 46435624 - 46435462
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannn 141  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||            |||   |||||||||||||||||       
T  46435624 ccacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtgcgtcacct------------ttatagatgctttatttgatatatat 46435537  T
Q  142 nnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatccc 216  Q
        |||||||||| ||| ||||||||| ||||||  |||||||||||||||||||| ||||||||| |||||||    
T  46435536 ttttaaagggtgtgtcacatgacacattctaattgggcaatggtatataccattatggtacacaagtcctatccc 46435462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 40 - 191
Target Start/End: Original strand, 8462127 - 8462277
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatan 139  Q
    |||||||||||||  ||||| |||||||||||||||| |||||  |||||| |||||||||||||||||| |||  |||  |||| ||||||| |||||     
T  8462127 ttccacttgtgtat-attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttattttataaatgttttatttaatatac 8462225  T
Q  140 nnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatatac 191  Q
          |||||| ||||||||||||||||| |||||| ||||||||||||||    
T  8462226 ttttttaaagggcgtgccacgtgacacattttaattggacaatggtatatac 8462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 8809811 - 8809715
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatata 138  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||| ||||||| |||| |||  |||| |||||||||||||    
T  8809811 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttactttataaatgttttatttgatata 8809715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 25161307 - 25161402
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgat 135  Q
    |||||||||||||||||||| ||  |||||||||||||||||| ||||||| ||||||||||||| |||| |||| |||  |||| ||||||||||    
T  25161307 ttccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttactttataaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 7214584 - 7214510
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattac 114  Q
    ||||| ||||||||||||||||||| ||| |||||||  ||||| ||||||||||||| |||||| | |||||||    
T  7214584 ttccatttgtgtaccattaaggtactaatagtatatattattggtcaattagagtgtgtcacctatcgatattac 7214510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 15387215 - 15387156
Alignment:
Q  156 ccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
    |||||||||||||| ||||||||||||  |||||||||||||| |||| ||||| |||||    
T  15387215 ccacgtgacacattttaattgaacaatattatataccattatggtacataagtgttatcc 15387156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 16679868 - 16679821
Alignment:
Q  43 cacttgtgtaccattaaggtaccaatggtatataccattggccaattag 91  Q
    ||||||||||||||||||||||||||| ||||||| ||| |||||||||    
T  16679868 cacttgtgtaccattaaggtaccaatgttatatactatt-gccaattag 16679821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 35998252 - 35998311
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccac 101  Q
    |||||||| ||||||||||||||||||| |||||| |||||   ||| ||||||||||||    
T  35998252 ccacttgtataccattaaggtaccaatgttatataacattgattaataagagtgtgccac 35998311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 214
Target Start/End: Original strand, 36771533 - 36771568
Alignment:
Q  179 caatggtatataccattatgttacacaagtgctatc 214  Q
    ||||||||||||||||||| ||||||||||||||||    
T  36771533 caatggtatataccattatattacacaagtgctatc 36771568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 43 - 216
Target Start/End: Complemental strand, 1212014 - 1211841
Alignment:
Q  43 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannnn 142  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||  |||| |||| ||| | |||||||||||||||||        
T  1212014 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatatttt 1211915  T
Q  143 nnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatccc 216  Q
       ||||||||||||||||| |||||| |||| |  |||||||||||||||||||| |||||||||| ||||||    
T  1211914 tttaaagggtgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgatatccc 1211841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 42 - 215
Target Start/End: Complemental strand, 5404047 - 5403874
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannn 141  Q
    ||||||||||||||||||||||| |||||||||||  ||||| || ||||||| |||||||||||||| |||| |||   ||| |||||||||||||       
T  5404047 ccacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttatagatgttttatttgatatattt 5403948  T
Q  142 nnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
        |||||| ||  ||| ||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  5403947 ttttaaagggcgtatcacatgacacattctaattggacaatggtatataccattatggtacacaagtgctatcc 5403874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 215
Target Start/End: Complemental strand, 32645009 - 32644836
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatan 139  Q
    |||||| |||||||||||||| || | || ||||||| |||||||||||||  ||||| ||||||| ||| |||| |||  ||| ||||||||| ||||     
T  32645009 ttccacctgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctacaaatgttactttaa-aatactttatttgttatat 32644911  T
Q  140 nnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
          |||||||||||||| ||| ||| | |||||||||||||||||||||||||||| ||||||||||||||||    
T  32644910 ttttttaaagggtgtgccacatgatacaatctaattgaacaatggtatataccattatg-tacacaagtgctatcc 32644836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 11753162 - 11753232
Alignment:
Q  37 gggttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacca 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  11753162 gggtaccacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacca 11753232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 34245567 - 34245663
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatata 138  Q
    ||||||||||||||||||||||  |||| |||||| ||||| ||||| | |||||||||| ||||||| |||| |||  ||| ||||||||||||||    
T  34245567 ccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttactttataaatactttatttgatata 34245663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 10503301 - 10503256
Alignment:
Q  171 taattgaacaatggtatataccattatgttacacaagtgctatccc 216  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||    
T  10503301 taattggacaatggtatataccattatggtacacaagtgctatccc 10503256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 11113557 - 11113649
Alignment:
Q  43 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgat 135  Q
    ||||||||||||||||||||||||||| |||||| ||||| | ||| |||||||| ||| ||| ||| |||| ||   | |||||||||||||    
T  11113557 cacttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgttactttgtaagtgctttatttgat 11113649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 26526436 - 26526385
Alignment:
Q  146 aaagggtgtgccacgtgacacattataattgaacaatggtatataccattat 197  Q
    |||||||||| ||||||||||||| |||||||||||| ||| ||||||||||    
T  26526436 aaagggtgtgtcacgtgacacattctaattgaacaatagtagataccattat 26526385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 35341534 - 35341709
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatan 139  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||| |||| |||  |||| |||||||||||||     
T  35341534 ttccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatatac 35341633  T
Q  140 nnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
          |||||||||||||||||||||||| |||||| |||||| |||||| ||||||| || | ||||| |||||    
T  35341634 ttttttaaagggtgtgccacgtgacacattctaattggacaatgatatatatcattatggtagataagtgttatcc 35341709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 42 - 215
Target Start/End: Original strand, 48250154 - 48250329
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannn 141  Q
    |||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||| |||| |||   ||||||||||||||||        
T  48250154 ccacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttactttatagatgctttatttgatattttt 48250253  T
Q  142 nnnnaaagggtgtgc--cacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
        ||||||| |||  || ||| |||||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  48250254 ttttaaagggtatgctacatgtgtcacattctaattggacaatggtatataccattatggtacacaagtgctatcc 48250329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 48072387 - 48072560
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatan 139  Q
    |||||||||||||| |||||||||||||| |||||  ||||||  ||||||||||||||||| |  |||| |||  |||  |||  |||||||||| ||     
T  48072387 ttccacttgtgtactattaaggtaccaatagtata--ccattgatcaattagagtgtgccacatttcaatgttattttataaatattttatttgatgtat 48072484  T
Q  140 nnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
          ||||||||||||||||| |||||| ||||||  |||||||||||||||||||| ||||||||||||||||    
T  48072485 ttttttaaagggtgtgccacgtggcacattctaattgggcaatggtatataccattatggtacacaagtgctatcc 48072560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 215
Target Start/End: Complemental strand, 32694717 - 32694568
Alignment:
Q  66 aatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtgaca 165  Q
    |||| |||||||||||||  ||||||||||| ||| ||| |||| |||| |||  ||| ||||||||||||||       ||||||||||||||||||||    
T  32694717 aatgatatataccattggtaaattagagtgtcccatctatcaatgttactttataaattctttatttgatatatttttttaaagggtgtgccacgtgaca 32694618  T
Q  166 cattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
    |||| |||||   |||||||||||||||||||  ||||||||||||||||    
T  32694617 cattctaattaggcaatggtatataccattatagtacacaagtgctatcc 32694568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 31307041 - 31306951
Alignment:
Q  46 ttgtgtaccattaaggtaccaatggtatataccattggccaatt-agagtgtgccacctaccaatattacattaccaatgctttatttgat 135  Q
    |||||||||||||| ||| ||||| |||||| ||||| |||||| | ||||||| |||||||||| |||| |||  |||||||||||||||    
T  31307041 ttgtgtaccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttactttataaatgctttatttgat 31306951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 40856949 - 40857000
Alignment:
Q  146 aaagggtgtgccacgtgacacattataattgaacaatggtatataccattat 197  Q
    |||||||||||||| ||||||||| |||||| |||||| |||||||||||||    
T  40856949 aaagggtgtgccacatgacacattctaattggacaatgatatataccattat 40857000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 36776120 - 36776062
Alignment:
Q  43 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccac 101  Q
    |||||| ||||||||||||||||  || |||||| ||||||  ||||||||||||||||    
T  36776120 cacttgcgtaccattaaggtaccgctgttatataacattggtgaattagagtgtgccac 36776062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 40893213 - 40893116
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgc-tttatttgatata 138  Q
    |||||||| |||||| || |||  |||||||||||||||||| |||||||| |||  || ||| |||| |||| |||  ||||| |||||||||||||    
T  40893213 ccacttgtataccatcaaagtattaatggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgcttttatttgatata 40893116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 40856392 - 40856456
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacc 106  Q
    |||||| |||| ||||||||||| |||| ||||||  ||||  ||||||||||||| ||||||||    
T  40856392 ccacttatgtatcattaaggtactaatgatatatattattgatcaattagagtgtgtcacctacc 40856456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 42 - 216
Target Start/End: Complemental strand, 24338001 - 24337827
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannn 141  Q
    |||||||||||| ||||||||| |||||||||||||||| || |||||||||||||||| |||||||| |||| |||   |||||||||||||||||       
T  24338001 ccacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttatagatgctttatttgatatatat 24337902  T
Q  142 nnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatccc 216  Q
        |||||||||||||| |  |||||| |||||| ||||||||||||||||||||| |||||||||||||||||    
T  24337901 ttttaaagggtgtgccacatagcacattctaattggacaatggtatataccattatggtacacaagtgctatccc 24337827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 215
Target Start/End: Complemental strand, 11254200 - 11254026
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatan 139  Q
    ||||||||||||||||||||  |||||||| |||||| ||||| ||| ||| ||| | |||||||||||| |||| |||  |||| |||||||||||||     
T  11254200 ttccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatatac 11254102  T
Q  140 nnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
          |||||||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||||| ||||||||    
T  11254101 atttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctatcc 11254026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 34 - 209
Target Start/End: Complemental strand, 41179742 - 41179567
Alignment:
Q  34 ttggggttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttg 133  Q
    ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||| |||||||| || |||| |||  |||| |||||||     
T  41179742 ttgggattccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttactttataaatgttttattta 41179643  T
Q  134 atatannnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtg 209  Q
    |||||       || || |||||||| || |||||| ||||||  |||||||||||||||||||| ||||||||||    
T  41179642 atatatttttttaatggatgtgccacatggcacattctaattgggcaatggtatataccattatggtacacaagtg 41179567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 215
Target Start/End: Original strand, 18168392 - 18168559
Alignment:
Q  49 tgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatata-nnnnnnnaa 147  Q
    |||||||||||||||||||||||||||| |||||  |||||||||||| |||||||||||| |||| |||  ||| ||||||||||||||        ||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaa 18168491  T
Q  148 agggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
    ||| |||||||||||||||| | |||||    |||  |||||||||||||| ||||||  ||||||||    
T  18168492 aggatgtgccacgtgacacaatctaattaggtaataatatataccattatggtacacagatgctatcc 18168559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 215
Target Start/End: Original strand, 18631949 - 18632116
Alignment:
Q  49 tgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatata-nnnnnnnaa 147  Q
    |||||||||||||||||||||||||||| |||||  |||||||||||| |||||||||||| |||| |||  ||| ||||||||||||||        ||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaa 18632048  T
Q  148 agggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
    ||| |||||||||||||||| | |||||    |||  |||||||||||||| ||||||  ||||||||    
T  18632049 aggatgtgccacgtgacacaatctaattaggtaataatatataccattatggtacacagatgctatcc 18632116  T

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Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 192
Target Start/End: Complemental strand, 4708470 - 4708328
Alignment:
Q  50 gtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannnnnnnaaag 149  Q
    |||||| |||||||||||||| ||||| |||  |||||||| |||||| ||||||||||| |||| |||  |||| |||||||||||||       ||||    
T  4708470 gtaccactaaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatatatttttaaag 4708371  T
Q  150 ggtgtgccacgtgacacattataattgaacaatggtatatacc 192  Q
    ||||||||||||| |||||| |||||   ||||||||| ||||    
T  4708370 ggtgtgccacgtggcacattctaattaggcaatggtatttacc 4708328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 1514803 - 1514899
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatata 138  Q
    |||||||||||||||||||||||||||| |||||| |||||  |||| ||||||| |||| ||||||| |||| |||  |||| |||||||||||||    
T  1514803 ccacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttactttataaatgttttatttgatata 1514899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 32826005 - 32825954
Alignment:
Q  43 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagt 94  Q
    ||||||||||||||||| ||| ||||| | ||||||||||||||||||||||    
T  32826005 cacttgtgtaccattaaagtatcaatgttgtataccattggccaattagagt 32825954  T

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Target: scaffold0229 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 43 - 215
Target Start/End: Complemental strand, 13176 - 13003
Alignment:
Q  43 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatannnn 142  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||  |||| |||| ||| | |||||||||||||||||        
T  13176 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatatttt 13077  T
Q  143 nnnaaaggg-tgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
       |||||| ||||||||||| |||||| |||| |  |||||||||||||||||||| ||||||||||||||||    
T  13076 tttaaagggttgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgctatcc 13003  T

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Target: scaffold0032 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 34192 - 34365
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatan 139  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||| |||  |||  |||||||||||||     
T  34192 ttccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattactttataaatattttatttgatata- 34290  T
Q  140 nnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
          |||||||||| ||||||||||||| |||||| | |||| |||||||| ||||| ||||||| ||||||||    
T  34291 ttttttaaagggtgtgtcacgtgacacattctaattggataatgttatatacc-ttatggtacacaaatgctatcc 34365  T

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Target: scaffold0519 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 11193 - 11367
Alignment:
Q  40 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatatan 139  Q
    ||||||||||||||||||||  |||||||| |||||| ||||| ||| ||| ||| | |||||||||||| |||| |||  |||| |||||||||||||     
T  11193 ttccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatatac 11291  T
Q  140 nnnnnnaaagggtgtgccacgtgacacattataattgaacaatggtatataccattatgttacacaagtgctatcc 215  Q
          |||||||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||||| ||||||||    
T  11292 atttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctatcc 11367  T

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Target: scaffold0263 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 23094 - 23142
Alignment:
Q  43 cacttgtgtaccattaaggtaccaatggtatataccattggccaattag 91  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  23094 cacttgtgtatcattaaggtaccaatggtatatactattggccaattag 23142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 23263 - 23174
Alignment:
Q  43 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgctttatttgatata 138  Q
    |||||||||||||||||||||| |      |||| |||||||||||||||||||||||||||||||| |||| |||  |||  |||||||||||||    
T  23263 cacttgtgtaccattaaggtacga------tatatcattggccaattagagtgtgccacctaccaattttactttataaatattttatttgatata 23174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 73071 - 73168
Alignment:
Q  42 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacattaccaatgc-tttatttgatata 138  Q
    |||||||| |||||| || |||  |||||||||||||||||| |||||||| |||  || ||| |||| |||| |||  ||||| |||||||||||||    
T  73071 ccacttgtataccatcaaagtattaatggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgcttttatttgatata 73168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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