View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4443_low_2 (Length: 390)
Name: NF4443_low_2
Description: NF4443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4443_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 130 - 287
Target Start/End: Original strand, 6518014 - 6518171
Alignment:
| Q |
130 |
accagtattagcataaaataaagagactatcatatgcagagtacttgagagaaaacatatctagaattttaatctgagataactatccttcatttgcatt |
229 |
Q |
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| T |
6518014 |
accagtattagcataaaataaagagactatcatatgcagagtacttgagagaaaacatatctagaattttaatctgagataactatccttcatttgcatt |
6518113 |
T |
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| Q |
230 |
tttaatgatatatacatcaatctagcagaacattgcctaattttcaaatgcaactata |
287 |
Q |
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| T |
6518114 |
tttaatgatatatacatcaatctagcagaacattgcctaattttcaaatgcaactata |
6518171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 284 - 376
Target Start/End: Original strand, 6518235 - 6518327
Alignment:
| Q |
284 |
tatatgaagaagatccctatactctttctcaagttgttccatctcattatttttccattcattttgttctatactgtcttatcttcttcatct |
376 |
Q |
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| T |
6518235 |
tatatgaagaagatccctatactctttctcaagttgttccatctcattatttttccattcattttgttctatactgtcttatcttcttcatct |
6518327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 348
Target Start/End: Complemental strand, 1740550 - 1740489
Alignment:
| Q |
287 |
atgaagaagatccctatactctttctcaagttgttccatctcattatttttccattcatttt |
348 |
Q |
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| T |
1740550 |
atgatgaagatccttatactctttctcaagttgttccatttcatcatctctccatccatttt |
1740489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 27248999 - 27248961
Alignment:
| Q |
292 |
gaagatccctatactctttctcaagttgttccatctcat |
330 |
Q |
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| T |
27248999 |
gaagatccatatactctttctcaagttgttccatttcat |
27248961 |
T |
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