View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4444-Insertion-1 (Length: 397)
Name: NF4444-Insertion-1
Description: NF4444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4444-Insertion-1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 48 - 397
Target Start/End: Complemental strand, 37830724 - 37830375
Alignment:
| Q |
48 |
aacttgactgttattattaaaatagatggttcaaattatacaataataaaatcaatttcagcaaagaaattttcaaacttgactgttattatgagcatag |
147 |
Q |
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| T |
37830724 |
aacttgactgttattattaaaatagatggttcaaattatacaataataaaatcaatttcagcaaagaaattttcaaacttgactgttattatgagcgtag |
37830625 |
T |
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| Q |
148 |
atggttaaaattaattccaaatgatttcaattgatagtttgagatggaacaatcgagatcaaaattgtatgaggcaacaccaaatcatgtatgtcttcca |
247 |
Q |
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| T |
37830624 |
atggttaaaattaattccaaatgatttcaattattagtttgagatggaacaatcgagatcaaaattgtatgaggcaacaccaagtcatgtatgtcttcca |
37830525 |
T |
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| Q |
248 |
gattcactataattatgtatatgcaaaagctgctattattaccgtaaaaaacggctataaacggagcatctaagaagagtgtctacgataactatgtgtt |
347 |
Q |
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| T |
37830524 |
gattcactataattatgtatatgcaaaagcttctattattaccgtaaaaaacggctataaacggagcatctaagaagagtgtctacgataactatgtgtt |
37830425 |
T |
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| Q |
348 |
tgtgtttttgtcttttcttttcaacctttatcattttctggtaggttctt |
397 |
Q |
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| T |
37830424 |
tgtgtttttgtcttttcttttcaacctttatcattttctggtaggttctt |
37830375 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 22926469 - 22926433
Alignment:
| Q |
8 |
gcattgtccttaccaaatgaactaagttcacgaggat |
44 |
Q |
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| T |
22926469 |
gcattgtccttaccaactgaactaagttcacgaggat |
22926433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 23507424 - 23507457
Alignment:
| Q |
10 |
attgtccttaccaaatgaactaagttcacgagga |
43 |
Q |
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| T |
23507424 |
attgtccttaccaactgaactaagttcacgagga |
23507457 |
T |
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