View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4444_low_1 (Length: 375)

Name: NF4444_low_1
Description: NF4444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4444_low_1
NF4444_low_1
[»] chr2 (2 HSPs)
chr2 (1-336)||(37831031-37831366)
chr2 (1-40)||(13337302-13337341)
[»] chr7 (1 HSPs)
chr7 (54-142)||(28006672-28006760)
[»] chr1 (3 HSPs)
chr1 (74-149)||(8133528-8133603)
chr1 (54-149)||(2660746-2660841)
chr1 (210-284)||(8133655-8133730)
[»] scaffold0236 (1 HSPs)
scaffold0236 (3-147)||(10309-10452)
[»] chr3 (2 HSPs)
chr3 (54-146)||(24099163-24099255)
chr3 (1-40)||(19295879-19295918)
[»] chr4 (2 HSPs)
chr4 (1-40)||(2792288-2792327)
chr4 (1-38)||(32057141-32057178)
[»] scaffold0036 (2 HSPs)
scaffold0036 (52-139)||(64195-64282)
scaffold0036 (52-139)||(69337-69424)
[»] chr6 (1 HSPs)
chr6 (1-39)||(34105441-34105479)
[»] scaffold0620 (1 HSPs)
scaffold0620 (3-39)||(3860-3896)


Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 37831031 - 37831366
Alignment:
Q  1 acttttgattcgaaatcggaagtcagtttcttgactcaagnnnnnnngtcatattttggtgtcttctacgacgaaccgaggattgattggtggtggaatc 100  Q
    ||||||||||||||||| ||||||||||||||||||||||       | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37831031 acttttgattcgaaatctgaagtcagtttcttgactcaagtttttttgccatattttggtgtcttctacgacgaaccgaggattgattggtggtggaatc 37831130  T
Q  101 cgaatgagtgttgaaatttggctcagttgtggtgatgagaaggtgaggtaagggtttattggttttttagcattggatttggtgtgagtaccaggccata 200  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  37831131 tgaatgagtgttgaaatttggctcagttgtggttatgagaaggtgaggtaagggtttattggttttttagcattggatttggtgtgagtagcaggcgata 37831230  T
Q  201 ggtgtgtagattttgttcttgtggccattcgcgatgtagttatgaggttttgattcaacttttggctatgtgggtttgtgggggtttagctttgttagag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37831231 ggtgtgtagattttgttcttgtggccattcgcgatgtagttatgaggttttgattcaacttttggctatgtgggtttgtgggggtttagcttggttagag 37831330  T
Q  301 gtttgtttttattagggtttaagatgtaccgtgtat 336  Q
    ||||||||||||| |||||||||||||||| |||||    
T  37831331 gtttgtttttattggggtttaagatgtaccatgtat 37831366  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13337302 - 13337341
Alignment:
Q  1 acttttgattcgaaatcggaagtcagtttcttgactcaag 40  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  13337302 acttttgattcgaaatcggaagtcagttctttgactcaag 13337341  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 28006672 - 28006760
Alignment:
Q  54 ttttggtgtcttctacgacgaaccgaggattgattggtggtggaatccgaatgagtgttgaaatttggctcagttgtggtgatgagaag 142  Q
    |||||||||||||| || | |||| ||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||    
T  28006672 ttttggtgtcttctccgtcaaacctaggattgattggtggtggaatccgaatgagtgtgggaatttggctcaattgtggtgatgagaag 28006760  T

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Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 8133528 - 8133603
Alignment:
Q  74 aaccgaggattgattggtggtggaatccgaatgagtgttgaaatttggctcagttgtggtgatgagaaggtgaggt 149  Q
    ||||||||||| |||||||||||||| |||||||||| |||||||||| | |||||||||||||||||||||||||    
T  8133528 aaccgaggattaattggtggtggaattcgaatgagtgctgaaatttggttgagttgtggtgatgagaaggtgaggt 8133603  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 2660841 - 2660746
Alignment:
Q  54 ttttggtgtcttctacgacgaaccgaggattgattggtggtggaatccgaatgagtgttgaaatttggctcagttgtggtgatgagaaggtgaggt 149  Q
    ||||||| ||||||  |||  ||||||||||||||| ||||| |||  ||| |||||| | |||||||||||| |  |||||||||||||||||||    
T  2660841 ttttggtatcttctctgacataccgaggattgattgatggtgaaatatgaacgagtgtgggaatttggctcagctcaggtgatgagaaggtgaggt 2660746  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 8133655 - 8133730
Alignment:
Q  210 attttgttcttgtggccattcgcgatgtagttatgaggttttgattcaacttttgg-ctatgtgggtttgtggggg 284  Q
    |||||||| ||||||||||||  |||| |||| ||||||||||  |||||||||||  ||||| ||||||||||||    
T  8133655 attttgtttttgtggccattcatgatgaagttgtgaggttttggctcaacttttggtttatgttggtttgtggggg 8133730  T

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Target: scaffold0236 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 147
Target Start/End: Complemental strand, 10452 - 10309
Alignment:
Q  3 ttttgattcgaaatcggaagtcagtttcttgactcaagnnnnnnngtcatattttggtgtcttctacgacgaaccgaggattgattggtggtggaatccg 102  Q
    ||||||||||| ||||  ||||||||||||||||||||       | | | ||||||||||||||   || ||||||||||||||||||||||||||||     
T  10452 ttttgattcgagatcgagagtcagtttcttgactcaagttgtttgg-cttgttttggtgtcttctctaacaaaccgaggattgattggtggtggaatcca 10354  T
Q  103 aatgagtgttgaaatttggctcagttgtggtgatgagaaggtgag 147  Q
    |||||||    |||||| ||||||||| || ||||||||||||||    
T  10353 aatgagttcataaatttagctcagttgaggagatgagaaggtgag 10309  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 24099255 - 24099163
Alignment:
Q  54 ttttggtgtcttctacgacgaaccgaggattgattggtggtggaatccgaatgagtgttgaaatttggctcagttgtggtgatgagaaggtga 146  Q
    |||| ||||||||| |||   ||||||  |||||||||||||| |||||||| ||||||| |||| |||| ||||||||||||||||||||||    
T  24099255 ttttagtgtcttctccgagagaccgagagttgattggtggtggtatccgaataagtgttggaattaggctaagttgtggtgatgagaaggtga 24099163  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 19295918 - 19295879
Alignment:
Q  1 acttttgattcgaaatcggaagtcagtttcttgactcaag 40  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  19295918 acttttgattcgatatcggaagttagtttcttgactcaag 19295879  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 2792327 - 2792288
Alignment:
Q  1 acttttgattcgaaatcggaagtcagtttcttgactcaag 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  2792327 acttttgattcgagatcggaagtcagtttcttgactcaag 2792288  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32057141 - 32057178
Alignment:
Q  1 acttttgattcgaaatcggaagtcagtttcttgactca 38  Q
    |||||||||| || ||||||||||||||||||||||||    
T  32057141 acttttgatttgagatcggaagtcagtttcttgactca 32057178  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 64282 - 64195
Alignment:
Q  52 tattttggtgtcttctacgacgaaccgaggattgattggtggtggaatccgaatgagtgttgaaatttggctcagttgtggtgatgag 139  Q
    |||||||| ||||||| ||||  || |||||||||| |||||||||||| |||| |||   |||||| ||||  ||||||||||||||    
T  64282 tattttggcgtcttctccgacagactgaggattgatcggtggtggaatctgaattagttcggaaattcggctatgttgtggtgatgag 64195  T

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Target: scaffold0036; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 69424 - 69337
Alignment:
Q  52 tattttggtgtcttctacgacgaaccgaggattgattggtggtggaatccgaatgagtgttgaaatttggctcagttgtggtgatgag 139  Q
    |||||||| ||||||| ||||  || |||||||||| |||||||||||| |||| |||   |||||| ||||  ||||||||||||||    
T  69424 tattttggcgtcttctccgacagactgaggattgatcggtggtggaatctgaattagttcggaaattcggctatgttgtggtgatgag 69337  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 34105441 - 34105479
Alignment:
Q  1 acttttgattcgaaatcggaagtcagtttcttgactcaa 39  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  34105441 acttttgattcgagatcgggagtcagtttcttgactcaa 34105479  T

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Target: scaffold0620 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 3860 - 3896
Alignment:
Q  3 ttttgattcgaaatcggaagtcagtttcttgactcaa 39  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  3860 ttttgattcgagatcgggagtcagtttcttgactcaa 3896  T

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