View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4444_low_2 (Length: 342)
Name: NF4444_low_2
Description: NF4444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4444_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 286
Target Start/End: Complemental strand, 22034639 - 22034364
Alignment:
| Q |
10 |
catcatcaccatattttgtagaaaggagttgaaaatggaagggtggtccttgaagtgaatactttgatgcatgtgggagtgatggagggtgggaaatata |
109 |
Q |
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| T |
22034639 |
catcatcaccatattttgtagaaaggagttgaaaatggaagggtggtccttgaagtgaatgctttgatgcatgtaggagtgatggagggtgggaaatata |
22034540 |
T |
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| Q |
110 |
tggaatcatgaaagggnnnnnnnncctttgaagtttggtgaaatgtttctttagaaacttaaattgccagcatacatgtttatacatcaatgagaggtag |
209 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22034539 |
tggaatcatgaaagggttttttt-cctttgaagtttggtgaaatgtttctttagaaacttaaattgccagcatacatgtttatacatcaatgagaggtag |
22034441 |
T |
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| Q |
210 |
tgtgtcaaatgctactttaatatattaggaagttggattttgcttggggaagcaggaaaaacagtgagataatgtat |
286 |
Q |
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| T |
22034440 |
tgtgtcaaatgctactttaatatattaggaagttggattttgcttggggaagcaggaaaaacagtgagataatgtat |
22034364 |
T |
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