View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4444_low_4 (Length: 236)
Name: NF4444_low_4
Description: NF4444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4444_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 49991162 - 49991384
Alignment:
| Q |
9 |
aggagcacagaccaataccttataacagctgaaaagaaactaacagcaagcctaagcaaagagcaaactttcaacagcctaacaactag----taccaaa |
104 |
Q |
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| T |
49991162 |
aggagcacaaaccaacaccttataacagctgaaaagaaacttacagcaagcctaagcaaacagcaaacttccaacagcctaacaagtaacaactaccaaa |
49991261 |
T |
|
| Q |
105 |
aacttagcaaaaacacgcatgaaaccaaatataccaaaatcaactttacacttgcataatcaattatgatagaacgaaacatggaatcaaacataggcta |
204 |
Q |
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| T |
49991262 |
aacttagcaaaaacacgcatgaaaccaaatataccaaaatcaactttacacttccataatcaattatgatagaacgaaacatggaatcaaacataggcta |
49991361 |
T |
|
| Q |
205 |
aaactcattccttattgatgatg |
227 |
Q |
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||||||||||||||||| ||||| |
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| T |
49991362 |
aaactcattccttattggtgatg |
49991384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 52490118 - 52490002
Alignment:
| Q |
10 |
ggagcacagaccaataccttataacagctgaaaagaaactaacagcaagcctaagcaaagagcaaactttcaacagcctaacaactagtaccaaaaactt |
109 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | |||||| |
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| T |
52490118 |
ggagcacaaaccaacaccttataacagctgaaaagaaactaacagcaagcctaagcaaacagcaaactttcaacggcctaacaacta----ccaaaactg |
52490023 |
T |
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| Q |
110 |
agcaaaaacacgcatgaaacc |
130 |
Q |
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||| ||||||| ||||||||| |
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| T |
52490022 |
agcgaaaacacacatgaaacc |
52490002 |
T |
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