View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4445-Insertion-11 (Length: 496)
Name: NF4445-Insertion-11
Description: NF4445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4445-Insertion-11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 103 - 496
Target Start/End: Complemental strand, 52563233 - 52562837
Alignment:
| Q |
103 |
tcacgagagaaccaaacagacacgtaaaaaagtattctaggctttcagctgacaatatttacatagcaaaatgaataacaccccaaaatattaatctgnn |
202 |
Q |
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| T |
52563233 |
tcacgagagaaccaaacagacacgtaagaaagtattctaggctttcagctgacaatatttacatatcaaaatgaataacaccccaaaatattaatctgaa |
52563134 |
T |
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| Q |
203 |
nnnnn---caattattgtgttccattgacggagnnnnnnntgaattgtattatttatctgaaaaatagtgatttgtttgaaaggagcgagtggtaaattt |
299 |
Q |
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| T |
52563133 |
aaaaaaaacaattattgtgttccattgacggagaaaaaattgaattgtattatttatctgaaaaatagtgatttgtttgaaaggagcgagtggtaaattt |
52563034 |
T |
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| Q |
300 |
ggattcccttctccggtgaattggttgatgatgtcgggcttgaaactgagcgcatccgcttctacttctatctgttttctcctccgttcagccaagtcca |
399 |
Q |
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| T |
52563033 |
ggattcccttcaccggtgaattggttgatgatgtcgggcttgaaactgagcgcatccgcttctacttctatctgttttctcctccgttcagccaagtcca |
52562934 |
T |
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| Q |
400 |
gaaccaaacccatcctcatctctttctcaaacaatattccttatagaaacattcaccaccaacatgaacgcgacacaactaaattcccaatttcttc |
496 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52562933 |
gaaccaaacccatcctcatctctttctcaaacaatatcccttatagaaacattcaccaccaacatgaacgcgacacaactaaattcccaatttcttc |
52562837 |
T |
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